BAC Information

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BAC

Clone NameB6Ng01-125M08
Chromosome1 (Build37)X (Build37)
Map Location 166,921,406 - 166,921,559111,187,553 - 111,187,928
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik
Downstream geneTbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125M08.bB6Ng01-125M08.g
ACCDH928313DH928314
length372370
definitionDH928313|Mus musculus domesticus DNA, BAC clone: B6Ng01-125M08, 5' end.DH928314|Mus musculus domesticus DNA, BAC clone: B6Ng01-125M08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(166,921,406 - 166,921,559)(111,187,553 - 111,187,928)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacagtgtcttttgccttgcagaagctttgcgacttta
tgaggtcccatctatcgattcttcatcttacagcacaagccattgctgtt
ctattcatgaattttcctcctgtacccatatcttcgaggctttttcctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagt
tttatgtattttggatattagccctctatcggatttagggttagtggaga
tcttttcccaatctgtaggttgcagttttgtcctattgacagtgtccttt
gccactttagtttcatgagattctatttgaccagcctcagtgcctgtgtt
ttaccttgtcttattgtatcttttttgttgtgcttggttgttgtttcttg
gaggactccttatttcagaagagagacagaagaggagcagatctggggaa
gaggggaggtagtggaaagctgggaagtagagggaggggaaaatgcggtt
gcaatgcattgtatgagaaaaaaatctattttcaattaaaaatacaaaaa
aaggcgttatttggttcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166921406_166921559
seq2: B6Ng01-125M08.b_266_420 (reverse)

seq1  ACTAAGGTCAAATCTAAGTGGATCAAGGAACTCCA-ATAAAACCAGAGAC  49
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  ACTAAGGTCAAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGAC  50

seq1  AGTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGGGCA  99
      | |||||||||||||||||||||| || |||||||||||||||||||| |
seq2  ACTGAAACTTATAGAGGAGAAAGTAGGAAAAAGCCTCGAAGATATGGGTA  100

seq1  CAGGGGAAAAATTCCTGAATAGAACAACAATGGCTTGTGCTGTAAGATCA  149
      |||| | ||||||| ||||||||||| ||||||||||||||||||||| |
seq2  CAGGAGGAAAATTCATGAATAGAACAGCAATGGCTTGTGCTGTAAGATGA  150

seq1  AGAAT  154
      |||||
seq2  AGAAT  155

seq1: chrX_111187553_111187928
seq2: B6Ng01-125M08.g_69_444

seq1  GAATTCTTTATGTATTTTGGATATTAGCCCTCTATCGGATTTAGGGTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATGTATTTTGGATATTAGCCCTCTATCGGATTTAGGGTTAG  50

seq1  TGGAGATCTTTTCCCAATCTGTAGGTTGCAGTTTTGTCCTATTGACAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATCTTTTCCCAATCTGTAGGTTGCAGTTTTGTCCTATTGACAGTG  100

seq1  TCCTTTGCCACTTTAGTTTCATGAGATTCTATTTGACCAGCCTCAGTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCCACTTTAGTTTCATGAGATTCTATTTGACCAGCCTCAGTGCC  150

seq1  TGTGTTTTACCTTGTCTTATTGTATCTTTTTTGTTGTGCTTGGTTGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTACCTTGTCTTATTGTATCTTTTTTGTTGTGCTTGGTTGTTGT  200

seq1  TTCTTGGAGGACTCCTTATTTCAGAAGAGAGACAGAAGAGGAGCAGATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGAGGACTCCTTATTTCAGAAGAGAGACAGAAGAGGAGCAGATCT  250

seq1  GGGGAAGAGGGGAGGTAGTGGAAAGCTGGGAAGTAGAGGGAGGGGAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGAGGGGAGGTAGTGGAAAGCTGGGAAGTAGAGGGAGGGGAAAAT  300

seq1  GCGGTTGCAATGCATTGTATGAGAAAAAAATCTATTTTCAATTAAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTTGCAATGCATTGTATGAGAAAAAAATCTATTTTCAATTAAAAATA  350

seq1  CAAAAAAAGGCGTTATTTGGTTCACA  376
      ||||||||||||||||||||||||||
seq2  CAAAAAAAGGCGTTATTTGGTTCACA  376