MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-127D05
Chromosome	X (Build37)
Map Location	24,979,137 - 24,980,098
singlet/doublet	singlet
Overlap gene	LOC100038977
Upstream gene	LOC629204, EG546272, LOC100043216, EG546282, LOC100040417, LOC100040428, LOC100040433, Xmr, LOC100038968
Downstream gene	LOC100038997, LOC664810, EG382275, LOC100039030, LOC100039065, LOC100039078, LOC100039003, Slx
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC629204 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:629204
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 5 ESTs, 5 Proteins pseudo : _no_value

name	EG546272 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:546272 MGI:3643862
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 11 ESTs, 5 Proteins

name	LOC100043216 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043216
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 7 ESTs, 5 Proteins

name	EG546282 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:546282 MGI:3646322
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040417 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040417
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 5 Proteins pseudo : _no_value

name	LOC100040428 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040428
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 66 ESTs

name	LOC100040433 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040433
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 2 Proteins pseudo : _no_value

name	Xmr (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:382277
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100038968 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038968
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 5 Proteins pseudo : _no_value

name	LOC100038977 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 3 ESTs, 5 Proteins

name	LOC100038997 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038997
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 5 Proteins

name	LOC664810 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:664810
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins pseudo : _no_value

name	EG382275 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382275 MGI:3703318
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039030 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039030
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 9 ESTs, 5 Proteins

name	LOC100039065 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039065
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 13 ESTs, 5 Proteins

name	LOC100039078 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039078
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 90 ESTs, 1 Protein

name	LOC100039003 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039003
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 5 Proteins

name	Slx (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:664829 MGI:99543
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 7 ESTs, 5 Proteins

name	EG546272 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94406980 GeneID:546272 MGI:3643862
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 5 Proteins product : predicted gene, EG546272, transcript variant 2 transcript_id : XM_620960.3

name	EG546272 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149271016 GeneID:546272 MGI:3643862
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 9 ESTs, 5 Proteins product : predicted gene, EG546272, transcript variant 1 transcript_id : XM_001478430.1

name	LOC100043216 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271020 GeneID:100043216
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 6 ESTs, 5 Proteins product : hypothetical protein LOC100043216, transcript variant 2 transcript_id : XM_001478456.1

name	LOC100043216 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271018 GeneID:100043216
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 6 ESTs, 5 Proteins product : hypothetical protein LOC100043216, transcript variant 1 transcript_id : XM_001478447.1

name	EG546282 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126090645 GeneID:546282 MGI:3646322
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG546282 transcript_id : NM_001081657.1

name	LOC100040428 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271221 GeneID:100040428
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 66 ESTs product : hypothetical protein LOC100040428 transcript_id : XM_001474898.1

name	Xmr (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:100816606 GeneID:382277
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Xmr protein transcript_id : NM_001040669.1

name	LOC100038977 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271231 GeneID:100038977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 3 ESTs, 5 Proteins product : hypothetical protein LOC100038977, transcript variant 2 transcript_id : XM_001472083.1

name	LOC100038977 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271229 GeneID:100038977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs, 5 Proteins product : hypothetical protein LOC100038977, transcript variant 1 transcript_id : XM_001472060.1

name	LOC100038997 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271233 GeneID:100038997
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 5 Proteins product : similar to XMR transcript_id : XM_001472117.1

name	EG382275 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801953 GeneID:382275 MGI:3703318
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG382275 transcript_id : NM_001025607.2

name	LOC100039030 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271240 GeneID:100039030
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 9 ESTs, 5 Proteins product : similar to Xmr protein, transcript variant 2 transcript_id : XM_001472195.1

name	LOC100039030 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271238 GeneID:100039030
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 7 ESTs, 5 Proteins product : similar to Xmr protein, transcript variant 1 transcript_id : XM_001472174.1

name	LOC100039065 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271246 GeneID:100039065
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 12 ESTs, 5 Proteins product : similar to Sycp3 like X-linked, transcript variant 2 transcript_id : XM_001472332.1

name	LOC100039065 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271244 GeneID:100039065
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 11 ESTs, 5 Proteins product : similar to Sycp3 like X-linked, transcript variant 1 transcript_id : XM_001472304.1

name	LOC100039078 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271248 GeneID:100039078
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 90 ESTs, 1 Protein product : similar to RIKEN cDNA 1810037I17 gene transcript_id : XM_001472358.1

name	LOC100039003 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271235 GeneID:100039003
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 5 Proteins product : similar to Xmr protein transcript_id : XM_001472071.1

name	Slx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407127 GeneID:664829 MGI:99543
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 6 ESTs, 5 Proteins product : Sycp3 like X-linked, transcript variant 2 transcript_id : XM_973255.1

name	Slx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407129 GeneID:664829 MGI:99543
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 7 ESTs, 5 Proteins product : Sycp3 like X-linked, transcript variant 3 transcript_id : XM_973298.1

name	EG546272 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149271017 GeneID:546272 MGI:3643862
definition	codon_start : 1 product : similar to XMR isoform 1 protein_id : XP_001478480.1

name	EG546272 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83000007 GeneID:546272 MGI:3643862
definition	codon_start : 1 product : similar to XMR isoform 2 protein_id : XP_620960.2

name	LOC100043216 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271019 GeneID:100043216
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001478497.1

name	LOC100043216 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271021 GeneID:100043216
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001478506.1

name	EG546282 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126090646 GeneID:546282 MGI:3646322
definition	codon_start : 1 note : novel protein similar to Xlr-related, meiosis regulated (Xmr) product : hypothetical protein LOC546282 protein_id : NP_001075126.1

name	LOC100040428 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271222 GeneID:100040428
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474948.1

name	Xmr (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:100816607 GeneID:382277
definition	codon_start : 1 product : Xmr protein protein_id : NP_001035759.1

name	LOC100038977 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271230 GeneID:100038977
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001472110.1

name	LOC100038977 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271232 GeneID:100038977
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001472133.1

name	LOC100038997 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271234 GeneID:100038997
definition	codon_start : 1 product : similar to XMR protein_id : XP_001472167.1

name	EG382275 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71037366 GeneID:382275 MGI:3703318
definition	codon_start : 1 note : novel protein similar to Xlr-related, meiosis regulated (Xmr) product : similar to XMR protein_id : NP_001020778.1

name	LOC100039030 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271239 GeneID:100039030
definition	codon_start : 1 product : similar to Xmr protein isoform 1 protein_id : XP_001472224.1

name	LOC100039030 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271241 GeneID:100039030
definition	codon_start : 1 product : similar to Xmr protein isoform 2 protein_id : XP_001472245.1

name	LOC100039065 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271245 GeneID:100039065
definition	codon_start : 1 product : similar to Sycp3 like X-linked isoform 1 protein_id : XP_001472354.1

name	LOC100039065 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271247 GeneID:100039065
definition	codon_start : 1 product : similar to Sycp3 like X-linked isoform 2 protein_id : XP_001472382.1

name	LOC100039078 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271249 GeneID:100039078
definition	codon_start : 1 product : similar to RIKEN cDNA 1810037I17 gene protein_id : XP_001472408.1

name	LOC100039003 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271236 GeneID:100039003
definition	codon_start : 1 product : similar to Xmr protein protein_id : XP_001472121.1

name	Slx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407128 GeneID:664829 MGI:99543
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_978349.1

name	Slx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407130 GeneID:664829 MGI:99543
definition	codon_start : 1 product : hypothetical protein isoform 3 protein_id : XP_978392.1

name	LOC629204 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271015 GeneID:629204
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 5 ESTs, 5 Proteins product : hypothetical LOC629204 pseudo : _no_value transcript_id : XR_035701.1

name	LOC100040417 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271220 GeneID:100040417
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 5 Proteins product : similar to XMR pseudo : _no_value transcript_id : XR_031969.1

name	LOC100040433 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271223 GeneID:100040433
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 2 Proteins product : similar to Xlr-like pseudo : _no_value transcript_id : XR_031984.1

name	LOC100038968 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271228 GeneID:100038968
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 5 Proteins product : similar to Sycp3 like X-linked pseudo : _no_value transcript_id : XR_030540.1

name	LOC664810 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271237 GeneID:664810
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins product : hypothetical LOC664810 pseudo : _no_value transcript_id : XR_001649.2

clone name	MSMg01-304I16
singlet/doublet	singlet
plural/unique	plural

clone name	B6Ng01-086N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007I02
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-127D05.b	B6Ng01-127D05.g
ACC	DH929378	DH929379
length	1,113	949
definition	DH929378\|Mus musculus domesticus DNA, BAC clone: B6Ng01-127D05, 5' end.	DH929379\|Mus musculus domesticus DNA, BAC clone: B6Ng01-127D05, 3' end.
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	gaattcttttatattctttgtcaaaaatcaaatgtccatacgtttgtggg gccatctcaggatcgtccattcaatttaattgatccaccagtttgttcct atagtaatagaatgcagcttttaatattatttctctgtattataaatcaa ggacaggtatggtggtacctctggaagttcttttattggttaagattgtt ttagctatcgtgggttttttatctgtatgaatcttagaattgttctttca atgtctggaaagaattgtgttagaattttgatagggattgcattaaatct ataaattgctattggtcagatgatcattttcaatatgttagtcctactgc cccatgagcattgaagatctttccatttctgatatgttcatcagtttctt tctacagagaattgaagtacttcccatttaagttcttatacatgcttgat tagagttacacaaagatatattatattgttcatgtctattgtaaagagtt gtattttcctaatttatttgttggcccatttatcatttatcaaaggaggg aaggctatgtattatttttgaaataactttatattcagctgttttgctgg aggtgtttatcagcttgcttatgtttactataatatcatctgcaaatagt gatacattgacctcttcctttctcctttgtatctctttgaactccatcag ttaacttattgctctgggtagaaagtttaatactatattaaataaatagt gagtgagtgtggtgcattcacttgtctccaattcagtggaactgttttaa gtttctctacatttaattttatgttgtccattggctttccatatactgct ttgattatgtttatgtatgttccttatatccctgatctcaaacttttgac atgaaaggggtggtgaattttttgaaggccttttcatcatattatgagat gatcatgtgaatattttctttcatttgttgatatggtggattatgtggat tggtttcaaaatgagccatccacacattcctgtaagaagctaactgatat ctggaagaatgtctgatgttttctgaatgggtcaagtccacatataaatt taagtttcatgat	gaattccctggaactggagttataggttgtgagcaaccttgtggatgctg ggaatccattctcagatctctggaagggaaccagtactcttaactgatga atcatctcaccaatcccctcactgatttttataaaatgaattatgtaact gaaagtgaaagacaaatttactaaccagtgagggaatgaaactcagatcc caaagaatctattttaaattatatgtaattgaatgttgcatgagctttct tagaggataataatttgtctttgatatatagtctcactatgtatgtcagg ctggctggaattttcctatgtaacctatgttgtcctttacactggaaatc tcctgctaagcttcctagactaggatcatagacccaaaacgtcttaaatg gcttaagaaacactgctcttaatacctatttttcagacatatttgtgtat tagtgttttgcttacaggtatatatgtgcaccacatatgtgcctgttgcc tatatatataagatgattatttcagacaccttggacctggagtcacataa agagaaaacacatggaaacttatatcaaagattctttcaaaaaatgcaac cagaaattagaatgactttggcaaatgaacaaatgggagaggtagagttg ttagttttgtagggtcatatttgtatcattttaaaaattatatgtggctg aagttgaaaagaaaacattactgagcttttagtaaaaatgtgtgtctttg attttgtctaagcagttaaccctataacttcatgccttcaaggaaactaa atctaaatctagaaatctgtgaaaacttttattttctactttaagtacct gttaatgagatttaaatttgatttacattcattgtgaaacacagaatctt gcacaaatctagaagtgtatttgttgtttatattttacatatggaaaaa
quality values	Open. Hide. 61 43 39 38 61 61 61 61 61 47 50 61 55 61 61 61 55 55 61 47 61 49 37 61 12 12 17 15 24 12 13 22 14 17 30 43 59 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 61 61 61 61 59 49 38 52 30 32 26 28 36 59 52 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 44 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 61 61 55 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 59 61 61 61 61 61 55 55 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 55 61 61 61 61 61 61 61 52 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 47 61 47 61 61 61 61 61 61 61 61 61 47 61 61 61 61 61 61 61 61 53 53 61 61 61 61 61 53 61 61 61 61 61 52 61 61 61 61 52 61 61 61 61 53 61 61 61 61 33 23 37 61 39 61 61 61 61 61 61 53 61 61 61 61 61 61 42 52 61 61 50 61 61 53 61 53 57 53 53 53 46 57 43 47 50 57 57 53 57 45 45 57 57 52 53 53 53 57 47 42 53 53 42 53 57 57 47 47 57 53 53 45 57 53 53 52 57 53 52 45 57 57 38 57 53 57 33 42 47 53 50 43 47 57 42 36 43 53 45 45 45 28 26 53 45 32 42 53 41 28 53 50 53 53 39 34 57 57 40 53 52 52 57 57 57 33 50 42 45 57 47 50 39 57 40 42 33 30 45 45 38 52 45 45 45 45 32 57 57 33 32 57 26 50 38 38 42 57 53 34 47 57 57 33 57 57 57 57 57 53 50 50 35 32 42 45 24 45 20 57 57 33 52 42 28 46 33 37 27 50 29 24 38 31 53 31 34 27 32 29 53 15 57 57 42 40 42 41 42 57 32 40 28 50 30 25 38 25 38 57 40 24 41 31 57 57 36 37 22 41 31 37 26 18 33 31 35 36 32 53 24 35 37 57 40 30 48 23 40 41 36 31 36 28 40 31 42 57 28 28 48 28 30 37 29 45 28 57 31 19 19 33 15 37 26 32 24 40 44 53 30 38 48 23 27 34 36 57 37 29 34 37 27 29 29 28 30 51 30 25 24 51 46 30 20 23 24 19 37 27 24 51 13 30 46 46 13 20 30 33 21 29 22 13 31 14 20 5 5 8 7 22 30 11 32 20 35 19 51 51 18 25 15 31 29 22 33 35 22 33 31 20 15 34 18 36 27 18 29 23 29 30 28 16 13 14 21 36 28 14 9 46 43 33 29 24 51 13 14 23 19 43 11 14 20 14 18 28 7 25 15 30 30 14 41 26 31 15 27 29 24 29 14 16 26 23 14 24 27 25 16 25 19 8 11 39 13 16 29 7 7 12 27 28 10 10 28 22 7 12 7 7 25 10 5 11 30 7 7 5 7 5 5 16 24 5 16 5 19 19 20 25 7 8 11 10 10 9 4 7 15 12 5 6 5 12 6 8 14 23 17 7 9 12 8 9 30 26 10 9 14 12 10 8 12 19 14 16 14 11 15 19 5 8 5 7 12 9 14 21 9 6 12 30 15 6 10 9 4 6 6 8 8 5 4 5 19 5 4 4	Open. Hide. 61 61 49 49 61 61 26 24 13 19 12 18 22 20 20 36 49 61 61 61 61 59 61 61 59 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 59 61 61 52 59 59 30 32 36 59 59 59 59 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 59 59 59 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 53 61 61 61 61 61 61 61 52 61 61 61 61 61 61 61 61 61 53 52 50 61 61 61 53 61 61 61 61 61 61 61 61 53 53 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 53 61 61 50 53 53 57 53 57 57 57 57 57 53 53 53 47 47 53 53 53 50 57 57 57 57 57 57 57 53 57 45 47 53 52 38 53 53 53 53 57 51 47 57 57 50 57 57 53 53 53 53 57 57 57 53 57 53 57 53 52 45 57 52 53 57 53 53 53 53 53 53 53 53 53 41 57 50 57 26 57 57 32 50 45 52 57 53 53 52 30 53 40 39 38 47 53 53 52 53 34 31 57 43 52 53 53 40 53 53 40 53 34 52 40 46 52 34 46 36 37 57 57 50 44 40 53 29 50 57 53 43 57 38 39 42 52 37 48 40 52 52 40 57 52 40 33 16 53 40 30 57 52 37 30 57 57 57 57 28 33 34 29 30 40 34 57 34 33 53 57 33 31 30 33 29 33 40 29 48 37 37 41 57 41 53 41 29 40 57 31 33 44 33 36 37 39 51 31 29 48 51 31 48 31 39 13 34 19 36 24 48 28 29 32 36 28 28 34 25 25 46 51 43 30 15 30 14 51 44 21 35 29 38 28 20 51 29 29 16 21 37 31 25 30 51 51 27 48 51 51 51 29 29 44 35 34 29 29 31 23 38 39 31 41 23 21 33 14 17 43 36 43 51 51 43 16 36 51 46 27 31 20 31 14 21 29 25 35 29 21 28 33 51 51 28 29 25 28 41 51 46 46 29 26 29 20 33 20 34 20 29 17 46 7 7 16 14 39 51 18 28 17 20 13 21 34 22 41 31 28 34 20 31 20 29 51 39 33 28 22 8 29 21 26 39 29 14 20 35 16 17 28 19 33 24 18 39 31 21 46 25 22 20 31 51 31 30 29 34 26 46 22 26 20 36 20 15 30 51 28 8 14 14 13 8 8 23 34 38 12 12 29 28 31 7 10 13 31 38 26 16 13 27 28 20 51 23 13 14 17 28 19 20 22 12 29 6 18 18 25 28 29 27 13 23 29 51 33 38 44 35 11 44 17 11 21 18 35 27 19 27 16 29 27 24 15 34 20 28 7 30 11 44 12 17 12 17 6 8 19 8 7 5 4 17 15 14 6 4 13 35 33 23 20 28 18 9 33 22 11 5 6 4 19 14 30 10 7 12 14 25 18 33 18 16 21 5 6 6 4 4 11 11 10 6 4 4 14 21 24 42 42 33 28

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_24979137_24980098
seq2: B6Ng01-127D05.g_69_1017 (reverse)

seq1  TTTTTCCATATTGTTAAACATAATAAACAACAAATTACACTTCTAAGATT  50
      |||||||||| ||| |||    |||||||||||| ||||||||| ||| |
seq2  TTTTTCCATA-TGTAAAA---TATAAACAACAAA-TACACTTCT-AGA-T  43

seq1  TTGTGCAAGACTTCTGTGTTTCCACAATGAATGTAAATCAAATTTTAAAA  100
      |||||||||| |||||||||| |||||||||||||||||||||||  |||
seq2  TTGTGCAAGA-TTCTGTGTTT-CACAATGAATGTAAATCAAATTT--AAA  89

seq1  TCTCATTAACAGGTACTTAAAGTAGAAAATAAAAGTTTTCACAGATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTAACAGGTACTTAAAGTAGAAAATAAAAGTTTTCACAGATTTCT  139

seq1  AAGATTTAGATTTAGTTTCCTTGAAGGCATGAAGTTATAGGGTTAACTGC  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AGATTTAGATTTAGTTTCCTTGAAGGCATGAAGTTATAGGGTTAACTGC  188

seq1  TTAGACAAAATCAAAGACACACATTTTTACTAAAAGCTCAGTAATGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAAAATCAAAGACACACATTTTTACTAAAAGCTCAGTAATGTTTT  238

seq1  CTTTTTCAACTTCAGCCACATATAATTTTTAAAATGATACAAATATGACC  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TTTTCAACTTCAGCCACATATAATTTTTAAAATGATACAAATATGACC  287

seq1  CTACAAAACTAACAACTCTACCTCTCCCATTTGTTCATTTGCCAAAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAACTAACAACTCTACCTCTCCCATTTGTTCATTTGCCAAAGTCA  337

seq1  TTCTAATTTCTGGTTGCATTTTTTGAAAGAATCTTTGATATAAGTTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTTCTGGTTGCATTTTTTGAAAGAATCTTTGATATAAGTTTCCA  387

seq1  TGTGTTTTCTCTTTATGTGACTCCAGGTCCAAGGTGTCTGAAATAATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTCTCTTTATGTGACTCCAGGTCCAAGGTGTCTGAAATAATCAT  437

seq1  CTTATATATATAGGCAACAGGCACATATGTGGTGCACATATATACCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATATATAGGCAACAGGCACATATGTGGTGCACATATATACCTGTA  487

seq1  AGCAAAACACTAATACACAAATATGTCTGAAAAATAGGTATTAAGAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACACTAATACACAAATATGTCTGAAAAATAGGTATTAAGAGCAG  537

seq1  TGTTTCTTAAGCCATTTAAGACGTTTTGGGTCTATGATCCTAGTCTAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTAAGCCATTTAAGACGTTTTGGGTCTATGATCCTAGTCTAGGA  587

seq1  AGCTTAGCAGGAGATTTCCAGTGTAAAGGACAACATAGGTTACATAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGCAGGAGATTTCCAGTGTAAAGGACAACATAGGTTACATAGGAA  637

seq1  AATTCCAGCCAGCCTGACATACATAGTGAGACTATATATCAAAGACAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGCCAGCCTGACATACATAGTGAGACTATATATCAAAGACAAAT  687

seq1  TATTATCCTCTAAGAAAGCTCATGCAACATTCAATTACATATAATTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCCTCTAAGAAAGCTCATGCAACATTCAATTACATATAATTTAAA  737

seq1  ATAGATTCTTTGGGATCTGAGTTTCATTCCCTCACTGGTTAGTAAATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTCTTTGGGATCTGAGTTTCATTCCCTCACTGGTTAGTAAATTTG  787

seq1  TCTTTCACTTTCAGTTACATAATTCATTTTATAAAAATCAGTGAGGGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACTTTCAGTTACATAATTCATTTTATAAAAATCAGTGAGGGGAT  837

seq1  TGGTGAGATGATTCATCAGTTAAGAGTACTGGTTCCCTTCCAGAGATCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGATGATTCATCAGTTAAGAGTACTGGTTCCCTTCCAGAGATCTG  887

seq1  AGAATGGATTCCCAGCATCCACAAGGTTGCTCACAACCTATAACTCCAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGATTCCCAGCATCCACAAGGTTGCTCACAACCTATAACTCCAGT  937

seq1  TCCAGGGAATTC  962
      ||||||||||||
seq2  TCCAGGGAATTC  949

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information