BAC Information

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BAC

Clone NameB6Ng01-127F20
Chromosome15 (Build37)X (Build37)
Map Location 100,412,843 - 100,413,37521,182,908 - 21,183,310
singlet/doubletsingletsinglet
Overlap genePou6f1
Upstream geneAqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2
Downstream geneDazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127F20.bB6Ng01-127F20.g
ACCDH929500DH929501
length526109
definitionDH929500|Mus musculus domesticus DNA, BAC clone: B6Ng01-127F20, 5' end.DH929501|Mus musculus domesticus DNA, BAC clone: B6Ng01-127F20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,412,843 - 100,413,375)(21,182,908 - 21,183,310)
sequence
tgtacccccaccaccacacactgggcaccgggctttggctctttgtcggt
ttccccttatagaagagattttgggtgctcgttatattctgagtgctgag
gatggaagagggctgagatgtgcttactagccttagctacttagctcagc
gttgcagatgatcacaagtcagcgtctgaaagactacgcgggaggcatgc
atataggacctgctgtaccctctgcaaatgacgctgtgacagaccagagg
gagggaggagctggaggtagtgtgtgctgcctctgggaaccggggcaagc
atggcatgccagagctgggttctccgacctgtgagtcagaatatcccaca
ggactagtcagggctgggattttccgatagatctaagcaggatccaagga
tgggctgagctcccaggtgactccccctgcccctccagacggtttctctg
tgtagccctggctgtcctgtatctcactctgtagactcactcatctttaa
gataagggttatcttgttgtggtggt
actctgtagaccaggctggcctcgaactcagaatcctcctgcctctgcct
cccaagtgctgggattaaaggcctgtgccaccactgcccgccccaccctg
ttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100412843_100413375
seq2: B6Ng01-127F20.b_52_583 (reverse)

seq1  ACCACCACTGCCCAGCTAACCCTTATCTTAAAGATGAGTGTGTCTACAGA  50
      ||||||||   | || |||||||||||||||||||||||| |||||||||
seq2  ACCACCAC-AACAAGATAACCCTTATCTTAAAGATGAGTGAGTCTACAGA  49

seq1  GTGAGCTCCAGGACAGCCAGGGCTACACAGAGAAACCGTCTGGAGGGGCA  100
      ||||| | ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATACAGGACAGCCAGGGCTACACAGAGAAACCGTCTGGAGGGGCA  99

seq1  GGGGGAGTCACCTGGGAGCTCAGCCCATCCTTGGATCCTGCTTAGATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGTCACCTGGGAGCTCAGCCCATCCTTGGATCCTGCTTAGATCTA  149

seq1  TCGGAAAATCCCAGCCCTGACTAGTCCTGTGGGATATTCTGACTCACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAAATCCCAGCCCTGACTAGTCCTGTGGGATATTCTGACTCACAGG  199

seq1  TCGGAGAACCCAGCTCTGGCATGCCATGCTTGCCCCGGTTCCCAGAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAGAACCCAGCTCTGGCATGCCATGCTTGCCCCGGTTCCCAGAGGCA  249

seq1  GCACACACTACCTCCAGCTCCTCCCTCCCTCTGGTCTGTCACAGCGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACTACCTCCAGCTCCTCCCTCCCTCTGGTCTGTCACAGCGTCAT  299

seq1  TTGCAGAGGGTACAGCAGGTCCTATATGCATGCCTCCCGCGTAGTCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAGGGTACAGCAGGTCCTATATGCATGCCTCCCGCGTAGTCTTTC  349

seq1  AGACGCTGACTTGTGATCATCTGCAACGCTGAGCTAAGTAGCTAAGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCTGACTTGTGATCATCTGCAACGCTGAGCTAAGTAGCTAAGGCTA  399

seq1  GTAAGCACATCTCAGCCCTCTTCCATCCTCAGCACTCAGAATATAACGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCACATCTCAGCCCTCTTCCATCCTCAGCACTCAGAATATAACGAG  449

seq1  CACCCAAAATCTCTTCTATAAGGGGAAACCGACAAAGAGCCAAAGCCCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAAATCTCTTCTATAAGGGGAAACCGACAAAGAGCCAAAGCCCGG  499

seq1  TGCCCAGTGTGTGGTGGTGGGGGTACAGAATTC  533
      |||||||||||||||||||||||||||||||||
seq2  TGCCCAGTGTGTGGTGGTGGGGGTACAGAATTC  532

seq1: chrX_21182908_21183310
seq2: B6Ng01-127F20.g_76_184 (reverse)

seq1  AAAAAAAAACAGAAAATATTCACACCATAAGGATGTAGAATATTTGCCAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CAAGTTGTTGCTCAGAGGCATCACAGAGATCCTCAATCCAAGGTATTTCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATTGCTCTTGGTTTCTCACAAGAACTTGATATTATGTTGTCCTATTTTAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  CAGGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGAGAAAGAGAGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGAGAATG  250
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGTATGTATGTGTGTCTCTCTTTCTGTGCCTGTGTATGTACTTAAAAC  300
                                               |   |||||
seq2  ----------------------------------------AAAAAAAAAC  10

seq1  AGTAAGGTCAGCCGGGCAGTGGTGGGGCACGCCTTTAATCCCAGCACTTG  350
      ||   |||  | |||||||||||||  || ||||||||||||||||||||
seq2  AG---GGTGGGGCGGGCAGTGGTGGCACAGGCCTTTAATCCCAGCACTTG  57

seq1  GGAGGCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTATAG  400
      ||||||||||||||| ||| |||||||||| |||||||||||||||| ||
seq2  GGAGGCAGAGGCAGGAGGA-TTCTGAGTTCGAGGCCAGCCTGGTCTACAG  106

seq1  AGT  403
      |||
seq2  AGT  109