BAC Information

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BAC

Clone NameB6Ng01-127H18
ChromosomeX (Build37)
Map Location 159,444,822 - 159,581,926
singlet/doubletdoublet
Overlap geneCtps2
Upstream geneNhs, Reps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250, Syap1, LOC100041607, S100g
Downstream geneLOC100040610, EG637051, Grpr, 1700045I19Rik, Ap1s2, Zrsr2, Car5b, Siah1b, Tmem27, Ace2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127H18.bB6Ng01-127H18.g
ACCDH929591DH929592
length1,0831,009
definitionDH929591|Mus musculus domesticus DNA, BAC clone: B6Ng01-127H18, 5' end.DH929592|Mus musculus domesticus DNA, BAC clone: B6Ng01-127H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,580,858 - 159,581,926)(159,444,822 - 159,445,837)
sequence
gaattctcaaactttgtctaggcaaagggacagtctttaagagtcacagg
tcatccctcctcctcctcccacctccaggacaatcagaaagaagctcatc
tgcatggtgattgctctgttctgaaagaaagcgaggagttggcagagcag
cttgccaggcagcctgcttcagagctgctttagtcagcctttgtcaggag
gatgaatacctgaggaagtaacctcaggaagaaaagaggctttgttctgc
tcctggttcttggggctgaatatccaaacagctctggttctggggaggac
tccaaggtaggtggcaggaataccagacctggaaggaaaggggtggctgg
gcttgctctttctaaagcagccctccataaggactccatagttccttttg
aaggtaggggccccaaaactcactggcctccaccctttaaaggttccata
atacctcccattctcaccatcctaggaactgagtctccactcacactgcc
tcaaaaatagatagatagatagatagatagatagatagatagatagatag
atagatagatagatagatagatagatagatagataaagtaccagagccta
tgagacagataaaggtgcctgcaacaagcctaatgggctgagtgctctcc
cctagtcccacatgaggagagagtcgactcctgcaagttgttcttggacc
ctcagatgtatttgtaatgatcacaggctccatatgtatatgcatgcaca
acacatacacaatttctttccttatttttcgtgtgtatgggtgttttgct
tgattatgtctgtgtactatatacatgcaaggtgcccaaaagtcaccaga
agggagtgctagatatcctgaaaactggagtaacaggggttttggtgagc
tacaactggatcctaaggaaacaaaccagggtcttctggaagaacaagtc
actgctcttaactgatgaagccatctcagctgcctaagtcttttaattta
taaaaatagatattagctccttcaaccataacttattaaactggagattt
caccggtttggactctaactttgttacttcctg
gaattccttaagcaaataactgcttgtttaccttgttcaagtatttattc
tcttttccttctcctgcttctcttattgtcagcaaataccgaggggcctc
tttcttcacaaagatttagattcccattgatgcctcagatttaatgaagg
ctggaaaggaaatgagagctgctgtaaaaccttgcagtttttaaaagctc
actacgagggaattcattttatgaaggcaaattccccagaagattctgat
cttaagtaccctttagaagcatatccacgagtctctactgtcccttaagg
attctgagaggaacaaggctcgagatttgttagaatgtcagaatgtgctt
taaagtgattaagagcattattttttaaaggtactttgtttgactgatag
ggcatcgtcaaaataaaaactctttcatcattcttcatatccacacagag
actttgtttgaataaaatgattccgagcaatgatccgttcatttaaatag
tcagtttccggctgtgacatgatctgtgtcacagcttctctctgtagctc
tgcagaaacacaaggactgtctttttttctttctaagacatccctagata
ttatgctataatgtttaatgtgtttcactttaaaattatactgctcaatt
tcttctctaagtgcggatgacttttcttccttttgaaaataagcttttct
ttatttttattttttattttttatttgtttctgaaagcgtattacattta
tttacttctttgtgggggtggacatgaaggatgggcctcatgccatggct
tctgtatagaggttaaaggaccactcttgactccttccttccaccacatg
ggcctcagagatggaattcaggccatcagttcagtggaagcaggccatct
taactgctgagccatttcctaggacccttgtttttttttttgtttgtatt
attttgttcttctttgtttctgagacaggtcctcacctagtagctgaggc
ttacctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_159580858_159581926
seq2: B6Ng01-127H18.b_53_1135 (reverse)

seq1  CAGGAAGTAACAAGGTT-GAGTCCAAACCGGTGGAATCTCAGGTT--ATT  47
      ||||||||||||| ||| ||||||||||||||| ||||||  |||  || 
seq2  CAGGAAGTAACAAAGTTAGAGTCCAAACCGGTGAAATCTCCAGTTTAATA  50

seq1  AGGTATGGTTGGAGGAGCTAATATCTATTTTTATAAATTAAAAGACTTAG  97
      || |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGGTTGAAGGAGCTAATATCTATTTTTATAAATTAAAAGACTTAG  100

seq1  GCAGCAGAGATGGC-TCATCAGTTAAGAGCAGTGAC-TGTTCTTCCAGAA  145
      ||||| |||||||| ||||||||||||||||||||| |||||||||||||
seq2  GCAGCTGAGATGGCTTCATCAGTTAAGAGCAGTGACTTGTTCTTCCAGAA  150

seq1  GACCCTGGTTTGTTTCC-TAGGATCCAGTTTGTAGCTCAC--AAACCCCT  192
      ||||||||||||||||| |||||||||| |||||||||||  ||||||||
seq2  GACCCTGGTTTGTTTCCTTAGGATCCAG-TTGTAGCTCACCAAAACCCCT  199

seq1  GTTACTCCAG-TTTCAGGATATCTAGCACTCCCTTCTGGTGAC-TTTGGG  240
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  GTTACTCCAGTTTTCAGGATATCTAGCACTCCCTTCTGGTGACTTTTGGG  249

seq1  CACC-TGCATGTATATAGTACACAGACATAATCAAGCAAAACACCCATAC  289
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGCATGTATATAGTACACAGACATAATCAAGCAAAACACCCATAC  299

seq1  ACACGAAAAATAAGGAAAG-AATTGTGTATGTGTTTGTGCATGCATATAC  338
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  ACACGAAAAATAAGGAAAGAAATTGTGTATGTG-TTGTGCATGCATATAC  348

seq1  ATATGGAGCCTGTGATCATTACAAATACATCTGAGGGTCCAAGAACAACT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGCCTGTGATCATTACAAATACATCTGAGGGTCCAAGAACAACT  398

seq1  TGCAGGAGTCGACTCTCTCCTCATGTGGGACTAGGGGAGAGCACTCAGCC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAGTCGACTCTCTCCTCATGTGGGACTAGGGGAGAGCACTCAGCC  448

seq1  CATTAGGCTTGTTGCAGGCACCTTTATCTGTCTCATAGGCTCTGGTACTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGCTTGTTGCAGGCACCTTTATCTGTCTCATAGGCTCTGGTACTT  498

seq1  ----TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  534
          ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  548

seq1  TCTATCTATCTATCTATCTATCTATCTATTTTTGAGGCAGTGTGAGTGGA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATTTTTGAGGCAGTGTGAGTGGA  598

seq1  GACTCAGTTCCTAGGATGGTGAGAATGGGAGGTATTATGGAACCTTTAAA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGTTCCTAGGATGGTGAGAATGGGAGGTATTATGGAACCTTTAAA  648

seq1  GGGTGGAGGCCAGTGAGTTTTGGGGCCCCTACCTTCAAAAGGAACTATGG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAGGCCAGTGAGTTTTGGGGCCCCTACCTTCAAAAGGAACTATGG  698

seq1  AGTCCTTATGGAGGGCTGCTTTAGAAAGAGCAAGCCCAGCCACCCCTTTC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTATGGAGGGCTGCTTTAGAAAGAGCAAGCCCAGCCACCCCTTTC  748

seq1  CTTCCAGGTCTGGTATTCCTGCCACCTACCTTGGAGTCCTCCCCAGAACC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGTCTGGTATTCCTGCCACCTACCTTGGAGTCCTCCCCAGAACC  798

seq1  AGAGCTGTTTGGATATTCAGCCCCAAGAACCAGGAGCAGAACAAAGCCTC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGTTTGGATATTCAGCCCCAAGAACCAGGAGCAGAACAAAGCCTC  848

seq1  TTTTCTTCCTGAGGTTACTTCCTCAGGTATTCATCCTCCTGACAAAGGCT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCTGAGGTTACTTCCTCAGGTATTCATCCTCCTGACAAAGGCT  898

seq1  GACTAAAGCAGCTCTGAAGCAGGCTGCCTGGCAAGCTGCTCTGCCAACTC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAGCAGCTCTGAAGCAGGCTGCCTGGCAAGCTGCTCTGCCAACTC  948

seq1  CTCGCTTTCTTTCAGAACAGAGCAATCACCATGCAGATGAGCTTCTTTCT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTTTCTTTCAGAACAGAGCAATCACCATGCAGATGAGCTTCTTTCT  998

seq1  GATTGTCCTGGAGGTGGGAGGAGGAGGAGGGATGACCTGTGACTCTTAAA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTCCTGGAGGTGGGAGGAGGAGGAGGGATGACCTGTGACTCTTAAA  1048

seq1  GACTGTCCCTTTGCCTAGACAAAGTTTGAGAATTC  1069
      |||||||||||||||||||||||||||||||||||
seq2  GACTGTCCCTTTGCCTAGACAAAGTTTGAGAATTC  1083

seq1: chrX_159444822_159445837
seq2: B6Ng01-127H18.g_66_1074

seq1  GAATTCCTTAAGCAAATAACTGCTTGTTTACCTTGTTCAAGTATTTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAGCAAATAACTGCTTGTTTACCTTGTTCAAGTATTTATTC  50

seq1  TCTTTTCCTTCTCCTGCTTCTCTTATTGTCAGCAAATACCGAGGGGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTTCTCCTGCTTCTCTTATTGTCAGCAAATACCGAGGGGCCTC  100

seq1  TTTCTTCACAAAGATTTAGATTCCCATTGATGCCTCAGATTTAATGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCACAAAGATTTAGATTCCCATTGATGCCTCAGATTTAATGAAGG  150

seq1  CTGGAAAGGAAATGAGAGCTGCTGTAAAACCTTGCAGTTTTTAAAAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGGAAATGAGAGCTGCTGTAAAACCTTGCAGTTTTTAAAAGCTC  200

seq1  ACTACGAGGGAATTCATTTTATGAAGGCAAATTCCCCAGAAGATTCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACGAGGGAATTCATTTTATGAAGGCAAATTCCCCAGAAGATTCTGAT  250

seq1  CTTAAGTACCCTTTAGAAGCATATCCACGAGTCTCTACTGTCCCTTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTACCCTTTAGAAGCATATCCACGAGTCTCTACTGTCCCTTAAGG  300

seq1  ATTCTGAGAGGAACAAGGCTCGAGATTTGTTAGAATGTCAGAATGTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGAGGAACAAGGCTCGAGATTTGTTAGAATGTCAGAATGTGCTT  350

seq1  TAAAGTGATTAAGAGCATTATTTTTTAAAGGTACTTTGTTTGACTGATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGATTAAGAGCATTATTTTTTAAAGGTACTTTGTTTGACTGATAG  400

seq1  GGCATCGTCAAAATAAAAACTCTTTCATCATTCTTCATATCCACACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCGTCAAAATAAAAACTCTTTCATCATTCTTCATATCCACACAGAG  450

seq1  ACTTTGTTTGAATAAAATGATTCCGAGCAATGATCCGTTCATTTAAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTTGAATAAAATGATTCCGAGCAATGATCCGTTCATTTAAATAG  500

seq1  TCAGTTTCCGGCTGTGACATGATCTGTGTCACAGCTTCTCTCTGTAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCCGGCTGTGACATGATCTGTGTCACAGCTTCTCTCTGTAGCTC  550

seq1  TGCAGAAACACAAGGACTGTCTTTTTTTCTTTCTAAGACATCCCTAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAACACAAGGACTGTCTTTTTTTCTTTCTAAGACATCCCTAGATA  600

seq1  TTATGCTATAATGTTTAATGTGTTTCACTTTAAAATTATACTGCTCAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTATAATGTTTAATGTGTTTCACTTTAAAATTATACTGCTCAATT  650

seq1  TCTTCTCTAAGTGCGGATGACTTTTCTTCCTTTTGAAAATAAGCTTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTAAGTGCGGATGACTTTTCTTCCTTTTGAAAATAAGCTTTTCT  700

seq1  TTATTTTTATTTTTTATTTTTTATTTGTTTCTGAAAGCGTATTACATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTATTTTTTATTTTTTATTTGTTTCTGAAAGCGTATTACATTTA  750

seq1  TTTACTTCTTTGTGGGGGTGGACATGAAGGATGGGCCTCATGCCATGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCTTTGTGGGGGTGGACATGAAGGATGGGCCTCATGCCATGGCT  800

seq1  TCTGTATAGAGGTTAAAGGACCACTCTTGACTCCTTCCTTCCACCACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATAGAGGTTAAAGGACCACTCTTGACTCCTTCCTTCCACCACATG  850

seq1  GGCCTCAGAGATGGAATTCAGGCCATCAGGTTCAGTGGAAGCAAGCCATC  900
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  GGCCTCAGAGATGGAATTCAGGCCATCA-GTTCAGTGGAAGCAGGCCATC  899

seq1  TTAACTGCTGAGCCATTTCCTAAGACCCTTGTTTTTTTTTTTTTGTTTGT  950
      |||||||||||||||||||||| ||||||||  |||||||||||||||| 
seq2  TTAACTGCTGAGCCATTTCCTAGGACCCTTG--TTTTTTTTTTTGTTTG-  946

seq1  TTATTATTTTGTTCTTCTTTGTTTTCCTGAGACAGGATCTCACTAAGTAG  1000
       |||||||||||||||||||||||  ||||||||||  |||||  |||||
seq2  -TATTATTTTGTTCTTCTTTGTTT--CTGAGACAGGTCCTCACCTAGTAG  993

seq1  CTGAGGCTTACCTGGA  1016
      ||||||||||||||||
seq2  CTGAGGCTTACCTGGA  1009