BAC Information

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BAC

Clone NameB6Ng01-129E04
ChromosomeX (Build37)6 (Build37)
Map Location 117,495,223 - 117,495,70040,749,730 - 40,750,876
singlet/doubletsingletsinglet
Overlap genePcdh11x
Upstream geneLOC385417, Pabpc5, LOC236983, LOC674318, EG545741, LOC100039461, H2afb3
Downstream geneLOC245576, LOC385419, EG434907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129E04.bB6Ng01-129E04.g
ACCDH930894DH930895
length9441,111
definitionDH930894|Mus musculus domesticus DNA, BAC clone: B6Ng01-129E04, 5' end.DH930895|Mus musculus domesticus DNA, BAC clone: B6Ng01-129E04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(117,495,223 - 117,495,700)(40,749,730 - 40,750,876)
sequence
gaattcaacttcctgaccttgtaaggcctttatgcaaaagttcaatcccc
cacccaacctagtgaaacatttgtttacaaaaaccacccactgcattctt
aaaaatgaatgacagggtagaccaactctttcctttttccttcatttcct
ttgggctattttttttttaattggcaaatcatgaaagactgaggaatgga
tacagaaaatgtggtacatttacacaatggagtactactcagctattaaa
aacaatgaatttatgaaattcattgcctaaggcaaatggatggatctgga
ggatatcatcctgagtgaggtaacccaataacaaaagaactcacatgata
tgcactcactgataagtggatattagcccagagacttagaatacccacga
tacagtttgcaaaacacaagaaaatcaagaagaacgaagaccaaagtgtg
gatacttcattcctccttagaatagggaacaaaatagccatggaaggagt
tatagagacaaagtttagagctgagtcagaaggatggaccatccagagat
tgccccacccggggatccatcccataatcagccaccaaacccagacacta
ttgcatatgccagcaagagtttgctgacatgaccctgatatagctgtctc
ttgtgaggctatgccagtgcctggcaaatacagaagtggatgctcacagt
catctattggatggaacacagggcccccaaaggagtagctagagaaagta
cccaagaagctgaaggggtctgcaaccctgtaggtggaacaacaatatga
actaaccagtatccccagagcttgtgcctttagctgcatatatagtagaa
gacggcctagtcagccatcattgggaagagaggcccttggtcttgcaaac
tttttatgcctcagtacaggggaacaccagggccaagaactggg
gaattcctctgacagaaggcttctcctaatattttgtggataataagata
tattggggtgtacactccagtgtgcacactccaatgatatctgtagactc
ctgcatgcaacatgctgtctgccggtaggcagcagactgtgttggtacac
tgtatctcataggatcttcctacagtcatcttcctgcagcttctaattaa
tggtgtgccaagaagcattatttattttaaatatataactctctgtatgt
ttgggtgggtataaactgtaattaaactcatgtaataaatttttaatttt
ttgtgttggattaaaccactcatatcatagaaatttattttaatgtaccc
agaaataataaaatttgctcttctttcacataagcaacatgaaaaaggat
aaaattccacttttgatgggtatcttcttcaaataaacagagtttcaatt
tcctttgaaaatgaaacagagcttgggataagtcagcttttcacatttca
gagagatgggcattcccagaggattctaatcattctttctaatcctccca
gaggtcacacttcagcctgctcctgccattacttaccgaacaactggggg
cattcttgacttttacatcttcttgggaaacacaccagagcaagtcgttc
aggagtacctggaggtatgactctgccctccttactgtggggttgttgct
attttctcatatatgtgttttaagttaacaagacaaaagaggattgatgc
aaatgtaagcttacaagtatttcatgttttttcttttctttaatgagttg
actgcatgtttctgcacacagtaggcaccatccgggaagccttgagaaac
gcaaaaggaagttgaattctgcttcctacacatgcccattgtccatatcc
tatttttctctagctaaaatctatcactgcaaatacccaagccacaatca
gcgagttcatttagcagcaataattaacaagcagaggattcatgagataa
tctacttatatttatcaatgcagatttagaactagacacttagtctatct
ttactccacagatccaagaatgatgactgactctttcaggtaaattaatg
ttaccttctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_117495223_117495700
seq2: B6Ng01-129E04.b_335_863 (reverse)

seq1  CTCTGGATGTACTGGTTAGTTCATATTGTTG-------------------  31
      ||||||   ||||||||||||||||||||||                   
seq2  CTCTGGGGATACTGGTTAGTTCATATTGTTGTTCCACCTACAGGGTTGCA  50

seq1  --CTCCTTCA------------------------------TTTTGGGCGC  49
        | ||||||                              ||  |||| |
seq2  GACCCCTTCAGCTTCTTGGGTACTTTCTCTAGCTACTCCTTTGGGGGCCC  100

seq1  TCTGTTCCATCCAATAGATGATTGTGAGCATCCACTTCTGTATTTGCCAG  99
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTGTTCCATCCAATAGATGACTGTGAGCATCCACTTCTGTATTTGCCAG  150

seq1  GCACTGGCATAGCCTCACAAGAGAGAGCTATATCAGGGTCTTTTCAGCAA  149
      |||||||||||||||||||||||| ||||||||||||||| | |||||||
seq2  GCACTGGCATAGCCTCACAAGAGACAGCTATATCAGGGTCATGTCAGCAA  200

seq1  AATCTTCCTGGCATATGCAATAGTGTCTGCGTTTGCTGGCTGATTATGAG  199
      | |||| |||||||||||||||||||||| ||||| |||||||||||| |
seq2  ACTCTTGCTGGCATATGCAATAGTGTCTGGGTTTGGTGGCTGATTATGGG  250

seq1  AAGGATACCTGGGTGGGGCAGTCTCTGGATGGTCCTTCCTTCCATCTCAG  249
      | |||| || |||||||||| |||||||||||||| ||||||   |||||
seq2  ATGGATCCCCGGGTGGGGCAATCTCTGGATGGTCCATCCTTCTGACTCAG  300

seq1  CTCCAAACTTTGTCTCTGTACCTCCTTCCATGGGTATTTTGTTCCCCATT  299
      ||| ||||||||||||| || |||||||||||| |||||||||||| |||
seq2  CTCTAAACTTTGTCTCTATAACTCCTTCCATGGCTATTTTGTTCCCTATT  350

seq1  CTAAGGAGGAACAATGTATCTACACTTTAGTCTTCCTTCTCCTTGATTTT  349
      |||||||||||  | ||||| ||||||| |||||| |||| |||||||||
seq2  CTAAGGAGGAATGAAGTATCCACACTTTGGTCTTCGTTCTTCTTGATTTT  400

seq1  CATGTGTTTTGCAAATTGTATCTTGGGTATTCTAAGTTTCTGGGCTAATA  399
      | ||||||||||||| |||||| |||||||||||||| ||||||||||||
seq2  CTTGTGTTTTGCAAACTGTATCGTGGGTATTCTAAGTCTCTGGGCTAATA  450

seq1  TCCACTTATCAGTGAGTGCATATCATGTGAGTTCTTTTGTGATTGGGTTA  449
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCACTTATCAGTGAGTGCATATCATGTGAGTTCTTTTGTTATTGGGTTA  500

seq1  ACTCACTCAGGATGATATCCTCTAGATAC  478
       ||||||||||||||||||||| |||| |
seq2  CCTCACTCAGGATGATATCCTCCAGATCC  529

seq1: chr6_40749730_40750876
seq2: B6Ng01-129E04.g_67_1177

seq1  GAATTCCTCTGACAGAAGGCTTCTCCTAATATTTTGTGGATAATAAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGACAGAAGGCTTCTCCTAATATTTTGTGGATAATAAGATA  50

seq1  TATTGGGGTGTACACTCCAGTGTGCACACTCCAATGATATCTGTAGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGGTGTACACTCCAGTGTGCACACTCCAATGATATCTGTAGACTC  100

seq1  CTGCATGCAACATGCTGTCTGCCGGTAGGCAGCAGACTGTGTTGGTACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGCAACATGCTGTCTGCCGGTAGGCAGCAGACTGTGTTGGTACAC  150

seq1  TGTATCTCATAGGATCTTCCTACAGTCATCTTCCTGCAGCTTCTAATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTCATAGGATCTTCCTACAGTCATCTTCCTGCAGCTTCTAATTAA  200

seq1  TGGTGTGCCAAGAAGCATTATTTATTTTAAATATATAACTCTCTGTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGCCAAGAAGCATTATTTATTTTAAATATATAACTCTCTGTATGT  250

seq1  TTGGGTGGGTATAAACTGTAATTAAACTCATGTAATAAATTTTTAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGGGTATAAACTGTAATTAAACTCATGTAATAAATTTTTAATTTT  300

seq1  TTGTGTTGGATTAAACCACTCATATCATAGAAATTTATTTTAATGTACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTGGATTAAACCACTCATATCATAGAAATTTATTTTAATGTACCC  350

seq1  AGAAATAATAAAATTTGCTCTTCTTTCACATAAGCAACATGAAAAAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAATAAAATTTGCTCTTCTTTCACATAAGCAACATGAAAAAGGAT  400

seq1  AAAATTCCACTTTTGATGGGTATCTTCTTCAAATAAACAGAGTTTCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCACTTTTGATGGGTATCTTCTTCAAATAAACAGAGTTTCAATT  450

seq1  TCCTTTGAAAATGAAACAGAGCTTGGGATAAGTCAGCTTTTCACATTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGAAAATGAAACAGAGCTTGGGATAAGTCAGCTTTTCACATTTCA  500

seq1  GAGAGATGGGCATTCCCAGAGGATTCTAATCATTCTTTCTAATCCTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGGGCATTCCCAGAGGATTCTAATCATTCTTTCTAATCCTCCCA  550

seq1  GAGGTCACACTTCAGCCTGCTCCTGCCATTACTTACCGAACAACTGGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCACACTTCAGCCTGCTCCTGCCATTACTTACCGAACAACTGGGGG  600

seq1  CATTCTTGACTTTTACATCTTCTTGGGAAACACACCAGAGCAAGTCGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTGACTTTTACATCTTCTTGGGAAACACACCAGAGCAAGTCGTTC  650

seq1  AGGAGTACCTGGAGGTATGACTCTGCCCTCCTTACTGTGGGGTTGTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTACCTGGAGGTATGACTCTGCCCTCCTTACTGTGGGGTTGTTGCT  700

seq1  ATTTTCTCATATATGTGTTTTAAGTTAACAAGACAAAAGAGGATTGATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCATATATGTGTTTTAAGTTAACAAGACAAAAGAGGATTGATGC  750

seq1  AAATGTAAGCTTACAAGTATTTCATGTTTTTTCTTTTTCTTTAATGAGTT  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAATGTAAGCTTACAAGTATTTCATGTTTTTTC-TTTTCTTTAATGAGTT  799

seq1  GACTGCATGTTTTCTGCACACAGTAGGCACCATCCGGGAAGCCTTGAGAA  850
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCATG-TTTCTGCACACAGTAGGCACCATCCGGGAAGCCTTGAGAA  848

seq1  ACGCAAAAGGAAGTTGAATTCTGCTTCCTACACATGCCCATTGTCCATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAAAAGGAAGTTGAATTCTGCTTCCTACACATGCCCATTGTCCATAT  898

seq1  CCTATTTTTCCTCTAGCTAAAATCTATCACTGCAAATACCCAAGGCCACA  950
      ||||||||| ||||||||||||||||||||||||||||||||| ||||| 
seq2  CCTATTTTT-CTCTAGCTAAAATCTATCACTGCAAATACCCAA-GCCAC-  945

seq1  AATCAGCAAAGTTCATTTAAGCAGCAAATAAATAAACAAGCAAGAAGGAA  1000
      |||||||  ||||||||| ||||||||   ||| ||||||||   |||| 
seq2  AATCAGC-GAGTTCATTT-AGCAGCAA--TAATTAACAAGCA--GAGGA-  988

seq1  TTCCATGAGATAAATCCTACTTATATTTTATTCAAAATGCAGGATTGTAG  1050
       | ||||||||||   ||||||||| |||||    |||||| |||| |||
seq2  -TTCATGAGATAA--TCTACTTATA-TTTAT---CAATGCA-GATT-TAG  1029

seq1  GAAACTAGACAACTTTTAGTCTAATCTTACTTCAACAAAGAATCCCCAAA  1100
        |||||||||    ||||||| |||||   || |||    ||||   ||
seq2  --AACTAGACA---CTTAGTCT-ATCTTTACTCCACA---GATCC---AA  1067

seq1  GAATGATGAAGTGACTCTTTCAAGGTGACATATAATGTTA-CTTCTAA  1147
      |||||||| | |||||||||| |||| | || |||||||| |||||||
seq2  GAATGATG-ACTGACTCTTTC-AGGT-AAAT-TAATGTTACCTTCTAA  1111