BAC Information

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BAC

Clone NameB6Ng01-129K07
ChromosomeX (Build37)1 (Build37)
Map Location 159,280,445 - 159,281,533188,587,641 - 188,587,792
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNhs, Reps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik
Downstream geneLOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610, EG637051, Grpr, 1700045I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129K07.bB6Ng01-129K07.g
ACCDH931173DH931174
length1,083484
definitionDH931173|Mus musculus domesticus DNA, BAC clone: B6Ng01-129K07, 5' end.DH931174|Mus musculus domesticus DNA, BAC clone: B6Ng01-129K07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(159,280,445 - 159,281,533)(188,587,641 - 188,587,792)
sequence
gaattccaggacagccagagctatacagagaaaccctgtctcgaaaaacc
aaaaataaataaataaataaaagagaaggctaggctgattccatgatagt
cttcaaattgatagttaaggagactaggcctaaatctctgtttcaaagaa
ctgggcaagttcaggcctcagaagctgccctgtcacctggcctgaggtaa
gaacaatgaatgggtcagcagcagtttccagacttcctcatctacttcct
cagtaacagtttccagacctccccagcaagtttccagccccaacacccca
gtaatgggatatccagaagatggacccagcaaattaacatagaggtcacg
taccctgggattccctagtgtgctttaaatcaggtctgcaagttcacttg
gttctcggtaatggggagacccaacatgctggacttgtgcagaataaaac
actctttgcatttacatactatttgagtctggggtgtcattctttggtga
atcatggacccttacattagtatgtgtctatatgatgtgttgtgtatgtg
tggtcatgtgtttaccacagcaaatatgtggaggtcaaaggacagcttat
ggggattggttccctttttgcaccatgggtttcagggactagattcaggt
catcaggcttgtttaacgagtgtgtttacaagatgcttagagagagtata
taaaaaggacttgaaagtgctgggcatggtggcacatgcctttaatccca
gcactcgggaggcagtggcaggcagatttctgagtttgaggccagcctgg
tctacagagtgagttccaggacttgtccctcctgatcccttctgctgact
tgtactgaggctgagctctggctgtccctgctaggtcatgccaccactgt
tgatttgtgtttgagctgccactgctgactccctgtgactggaactgctg
atttccagaccaacaagattgggagtgctccaaaggacctttctaatagg
tcaactcctcccaacccctcgccatctcgctttccactacctctggtggt
ggtcggctatagggaggttaaagtgtttagaat
ttttccttcttttttgcttttcatttgttggtttggtttggtttggtttg
gtctggtttggcttagagagggttggtttgtaggttgttttgttttgttt
ttcaagacagggtttctctgtgtaccccttgaatgtcctagaactcactc
tgtagaccaagctcagagatttgcctgcctcctgcctcctgagtggcgaa
aaagcatgcaccaccactgccagcccacagaataaactttaaaaaacact
tcaaagaagaagtgctagctaacagaggagtcaatggagaagaaagatgt
tgaagatgaaagagtaagggataaccagacagtggcggcacatgcctttt
atcccagcacttgggaggcagaggcaggtggatagattcctgagtttgag
gccagcctggtctacagagtgagtttcaagacagccagggctatacatag
aaactgtctcgagataggaagaaagaaagaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_159280445_159281533
seq2: B6Ng01-129K07.b_46_1128

seq1  GAATTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCGAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCGAAAAACC  50

seq1  AAAAATAAATAAATAAATAAAAGAGAAGGCTAGGCTGATTCCATGATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATAAATAAATAAAAGAGAAGGCTAGGCTGATTCCATGATAGT  100

seq1  CTTCAAATTGATAGTTAAGGAGACTAGGCCTAAATCTCTGTTTCAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATTGATAGTTAAGGAGACTAGGCCTAAATCTCTGTTTCAAAGAA  150

seq1  CTGGGCAAGTTCAGGCCTCAGAAGCTGCCCTGTCACCTGGCCTGAGGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAAGTTCAGGCCTCAGAAGCTGCCCTGTCACCTGGCCTGAGGTAA  200

seq1  GAACAATGAATGGGTCAGCAGCAGTTTCCAGACTTCCTCATCTACTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGAATGGGTCAGCAGCAGTTTCCAGACTTCCTCATCTACTTCCT  250

seq1  CAGTAACAGTTTCCAGACCTCCCCAGCAAGTTTCCAGCCCCAACACCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACAGTTTCCAGACCTCCCCAGCAAGTTTCCAGCCCCAACACCCCA  300

seq1  GTAATGGGATATCCAGAAGATGGACCCAGCAAATTAACATAGAGGTCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGGATATCCAGAAGATGGACCCAGCAAATTAACATAGAGGTCACG  350

seq1  TACCCTGGGATTCCCTAGTGTGCTTTAAATCAGGTCTGCAAGTTCACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGGGATTCCCTAGTGTGCTTTAAATCAGGTCTGCAAGTTCACTTG  400

seq1  GTTCTCGGTAATGGGGAGACCCAACATGCTGGACTTGTGCAGAATAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCGGTAATGGGGAGACCCAACATGCTGGACTTGTGCAGAATAAAAC  450

seq1  ACTCTTTGCATTTACATACTATTTGAGTCTGGGGTGTCATTCTTTGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTGCATTTACATACTATTTGAGTCTGGGGTGTCATTCTTTGGTGA  500

seq1  ATCATGGACCCTTACATTAGTATGTGTCTATATGATGTGTTGTGTATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGACCCTTACATTAGTATGTGTCTATATGATGTGTTGTGTATGTG  550

seq1  TGGTCATGTGTTTACCACAGCAAATATGTGGAGGTCAAAGGACAGCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATGTGTTTACCACAGCAAATATGTGGAGGTCAAAGGACAGCTTAT  600

seq1  GGGGATTGGTTCCCTTTTTGCACCATGGGTTTCAGGGACTAGATTCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTGGTTCCCTTTTTGCACCATGGGTTTCAGGGACTAGATTCAGGT  650

seq1  CATCAGGCTTGTTTAACGAGTGTGTTTACAAGATGCTTAGAGAGAGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGCTTGTTTAACGAGTGTGTTTACAAGATGCTTAGAGAGAGTATA  700

seq1  TAAAAAGGACTTGAAAGTGCTGGGCATGGTGGCACATGCCTTTAATCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGACTTGAAAGTGCTGGGCATGGTGGCACATGCCTTTAATCCCA  750

seq1  GCACTCGGGAGGCAGTGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCGGGAGGCAGTGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGG  800

seq1  TCTACAGAGTGAGTTCCAGGACTTGTCCCTCCTGATCCCTTCTGCTGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGTGAGTTCCAGGACTTGTCCCTCCTGATCCCTTCTGCTGACT  850

seq1  TGTACTGAGGCTGAGCTCTGGCTGTCCCTGCTAGGTCATGCCACCACTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGAGGCTGAGCTCTGGCTGTCCCTGCTAGGTCATGCCACCACTGT  900

seq1  TGATTTGTGTTTGAGCTGCCACTGCTGACT-CCTGTGAACTGAACTGCTG  949
      |||||||||||||||||||||||||||||| |||||||   |||||||||
seq2  TGATTTGTGTTTGAGCTGCCACTGCTGACTCCCTGTGACTGGAACTGCTG  950

seq1  ATTTCCAGA-CAACACAGA-TGGGAGTTGCTCCAAAGGACCTTTCTAAAT  997
      ||||||||| ||||| ||| |||||| ||||||||||||||||||| |||
seq2  ATTTCCAGACCAACA-AGATTGGGAG-TGCTCCAAAGGACCTTTCT-AAT  997

seq1  AGGTCCACTCCCCCCAACCCCCCGCCCATCCTCGCTTTCCCACTACCTCT  1047
      ||||| ||||| ||||||||| || |||| |||||||| |||||||||||
seq2  AGGTCAACTCCTCCCAACCCCTCG-CCAT-CTCGCTTT-CCACTACCTCT  1044

seq1  GGTAGGTGGTGGGCTATAAGGGAGGTTAAAGTGTTTAAGAAT  1089
      ||| |||||| |||||| |||||||||||||||||| |||||
seq2  GGT-GGTGGTCGGCTAT-AGGGAGGTTAAAGTGTTT-AGAAT  1083

seq1: chr1_188587641_188587792
seq2: B6Ng01-129K07.g_413_556 (reverse)

seq1  TCTTTCTTTCTTTCTTTTTTTTTCTTGGTTTTTCGAGACAAGGTTTCTCT  50
          ||||||||||      ||||||  | | ||||||||  |||||| |
seq2  ----TCTTTCTTTC------TTTCTTCCTATCTCGAGACA--GTTTCTAT  38

seq1  GTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCG  100
      ||||||||||||||||| || |||||||| ||||||||||||||||||| 
seq2  GTATAGCCCTGGCTGTCTTGAAACTCACTCTGTAGACCAGGCTGGCCTCA  88

seq1  AACTCAGAA----ATCCACCTGCCTCTGTCTCCCGAGTGCTGGGATTAAA  146
      ||||||| |    ||||||||||||||| ||||| ||||||||||| |||
seq2  AACTCAGGAATCTATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATAAAA  138

seq1  GGCATG  152
      ||||||
seq2  GGCATG  144