BAC Information

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BAC

Clone NameB6Ng01-130A11
ChromosomeX (Build37)
Map Location 163,607,543 - 163,692,249
singlet/doubletdoublet
Overlap geneTmsb4x, Tlr8
Upstream geneGemin8, Gpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660, LOC667791, EG667794, LOC100040850, LOC627268
Downstream geneTlr7, Prps2, EG627311, Frmpd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130A11.bB6Ng01-130A11.g
ACCDH931447DH931448
length1,017979
definitionDH931447|Mus musculus domesticus DNA, BAC clone: B6Ng01-130A11, 5' end.DH931448|Mus musculus domesticus DNA, BAC clone: B6Ng01-130A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,607,543 - 163,608,568)(163,691,241 - 163,692,249)
sequence
gaattcagattggcttctcctcagccatgaactatagagcgcctcccata
cctctttacctctaaagttcagccatggagacaagcctcccagaatctca
ttaccttctcttttctcatctagtgagctctttaactggaatctggattc
attttaagcctttctactgaagtgcatatttgaatgtggaaagcagaact
gaagaacattcttgatgaacactacctagaatcctacagatcaacattgg
catttttctcccattgacagtcatctgctcttggtatacattgttttcaa
ggatgcctttcttcctagtgtatcccatgttcttttactgagactgcact
gtgcctgagtagaagtcaaactgcccaacttcccccacagcttcttgctc
aaaaccagaaaagaaataataagcaacaaatgaaattattttctacctga
ggtctgccatagtacatgggttggtttggttcttggttttggaggtcttt
gttgtaaaattgggtagttctgctctctgccacaaaggaaaagaaatatt
gtttaggttccatcctaatgatctcaaattgaaccccacaataatccccc
aactaaactactaattgtgtgaacttttcctggggacatatacaaacccc
agccatgacataaagaaccaaggaacaatttcagccaaggttaacttcgt
gaactgatatgtttagtatgggcacaggtgagagattacagattattttc
aggtaaatgtgcaatttaaaaggacttgagaagctataccactcaagaaa
atttcttttttctccaggcaactttaacttctatatatcttcaggagtgt
gggggggggacgacttaggagtcccctcttctcacagaaaatctgtctag
tcatcacttagctcagctccagagagttaggataaagcaatgcaaatatg
gcttggactggttcctgaaagcacattatgggaaaattatcggtgaatag
aataatttctagaggtc
gaattcaaacatgcaggaaagttgaacatgcattatcattatcaaaacag
ggatcagacaattccacagatgatagaaacaactgggtctatcctgagaa
aagaataatttgggcttacttcttttatttgttttatgccaaaacagttc
tggttgggtaaaatattttaatgtggaaaaaggaaatcataaatttaata
ggaaaaaaaagttaggaaaattgttgtgtctagaattgaagtgtggaagt
ctttcctagaccatacaaataagtcaaattcccttgttgggttgcttata
gcatcaagtattttttttaaaatcacaggtgaaatcttgtaatattattg
tatgtgactcatgtttatctacacagaaaacgataaaataaccaataaaa
tggagtccccagaccatttactggctgacacatgcaggaaagtatataaa
acgaccttcagacctgacaatgttcagattggcatacatgtagactgaga
tatgcatagggccctagataaatataacatttcccacagcatcttacaag
tttcttacattcctgagagtctacaatgcttcatgttctcaagcactatc
ttatgatattgttttgatctacggtctcatgtagcccagatttgtcagga
gctggccgagagatgaacttaaactcttgatcttcctgtttctacctact
gggtgccaggattataagcttgtgcaacacactccagtttaatcagagct
aaagattgaacacacagggccactggaatgctaaggtgatactttacact
gagctacagcctagctgagtcatattatggaggacactcagttgtatagt
ctcttatgctgcacattagtagactcaggtttagagttttgagtgagatc
attgctgctaagatgaagtcagtgaccacacctgatttctatctagagtg
catccaaacctaggtgcgaatacttttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_163607543_163608568
seq2: B6Ng01-130A11.b_47_1063

seq1  GAATTCAGATTGGCTTCTCCTCAGCCATGAACTATAGAGCGCCTCCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTGGCTTCTCCTCAGCCATGAACTATAGAGCGCCTCCCATA  50

seq1  CCTCTTTACCTCTAAAGTTCAGCCATGGAGACAAGCCTCCCAGAATCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTACCTCTAAAGTTCAGCCATGGAGACAAGCCTCCCAGAATCTCA  100

seq1  TTACCTTCTCTTTTCTCATCTAGTGAGCTCTTTAACTGGAATCTGGATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTCTCTTTTCTCATCTAGTGAGCTCTTTAACTGGAATCTGGATTC  150

seq1  ATTTTAAGCCTTTCTACTGAAGTGCATATTTGAATGTGGAAAGCAGAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGCCTTTCTACTGAAGTGCATATTTGAATGTGGAAAGCAGAACT  200

seq1  GAAGAACATTCTTGATGAACACTACCTAGAATCCTACAGATCAACATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACATTCTTGATGAACACTACCTAGAATCCTACAGATCAACATTGG  250

seq1  CATTTTTCTCCCATTGACAGTCATCTGCTCTTGGTATACATTGTTTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCTCCCATTGACAGTCATCTGCTCTTGGTATACATTGTTTTCAA  300

seq1  GGATGCCTTTCTTCCTAGTGTATCCCATGTTCTTTTACTGAGACTGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCTTTCTTCCTAGTGTATCCCATGTTCTTTTACTGAGACTGCACT  350

seq1  GTGCCTGAGTAGAAGTCAAACTGCCCAACTTCCCCCACAGCTTCTTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGAGTAGAAGTCAAACTGCCCAACTTCCCCCACAGCTTCTTGCTC  400

seq1  AAAACCAGAAAAGAAATAATAAGCAACAAATGAAATTATTTTCTACCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGAAAAGAAATAATAAGCAACAAATGAAATTATTTTCTACCTGA  450

seq1  GGTCTGCCATAGTACATGGGTTGGTTTGGTTCTTGGTTTTGGAGGTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCCATAGTACATGGGTTGGTTTGGTTCTTGGTTTTGGAGGTCTTT  500

seq1  GTTGTAAAATTGGGTAGTTCTGCTCTCTGCCACAAAGGAAAAGAAATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAAATTGGGTAGTTCTGCTCTCTGCCACAAAGGAAAAGAAATATT  550

seq1  GTTTAGGTTCCATCCTAATGATCTCAAATTGAACCCCACAATAATCCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGTTCCATCCTAATGATCTCAAATTGAACCCCACAATAATCCCCC  600

seq1  AACTAAACTACTAATTGTGTGAACTTTTCCTGGGGACATATACAAACCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAACTACTAATTGTGTGAACTTTTCCTGGGGACATATACAAACCCC  650

seq1  AGCCATGACATAAAGAACCAAGGAACAATTTCAGCCAAGGTTAACTTCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGACATAAAGAACCAAGGAACAATTTCAGCCAAGGTTAACTTCGT  700

seq1  GAACTGATATGTTTAGTATGGGCACAGGTGAGAGATTACAGATTATTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGATATGTTTAGTATGGGCACAGGTGAGAGATTACAGATTATTTTC  750

seq1  AGGTAAATGTGCAATTTAAAAGGACTTGAGAAGCTATACCACTCAAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAATGTGCAATTTAAAAGGACTTGAGAAGCTATACCACTCAAGAAA  800

seq1  ATTTCTTTTTTCTCCAGGCAACTTTAACTTCTATATATCTTCAGGGAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTTCTTTTTTCTCCAGGCAACTTTAACTTCTATATATCTTCA-GGAGTG  849

seq1  TGGGGGGGGGACGACTTAGGAGTCCCCTCTTCTCCACAGAAAATCTGTCT  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGGGGGGGGACGACTTAGGAGTCCCCTCTTCT-CACAGAAAATCTGTCT  898

seq1  AAGTCATCACTTAGCTCAGCTCCAGTAGAGGTAGGATAAAGCAATGCAAT  950
       |||||||||||||||||||||||| |||| |||||||||||||||||| 
seq2  -AGTCATCACTTAGCTCAGCTCCAG-AGAGTTAGGATAAAGCAATGCAA-  945

seq1  ATAGTGCCTTGGACTGGTTCCTGAAAGCACATTAATGGGAAAATTAACTG  1000
      ||| || |||||||||||||||||||||||||| |||||||||||| | |
seq2  ATA-TGGCTTGGACTGGTTCCTGAAAGCACATT-ATGGGAAAATTATCGG  993

seq1  TGAAATTAGAATAAATTCTAGAGTTC  1026
      ||||  |||||||| |||||||| ||
seq2  TGAA--TAGAATAATTTCTAGAGGTC  1017

seq1: chrX_163691241_163692249
seq2: B6Ng01-130A11.g_68_1046 (reverse)

seq1  TAAAAAGTATTTCTGGCAACCTAGAGTATTGAATGCACTTCTAGAGTAGA  50
      ||||||||||   | || |||||| || ||| |||||| |||||| ||||
seq2  TAAAAAGTAT---TCGC-ACCTAG-GT-TTGGATGCAC-TCTAGA-TAGA  42

seq1  AATCAGGTTGTTGTTCAAACTGAACTTTCATCTCTAAGCAAGCAAATGGA  100
      ||||||| ||| ||    |||||   ||||  ||| ||| |||||   ||
seq2  AATCAGG-TGTGGT---CACTGA--CTTCA--TCTTAGC-AGCAA--TGA  81

seq1  TCTCACTCAAAAACTCTAAACCTGGAGTCTACTTAATGTGCAGCAATAGA  150
      |||||||| |||||||||||||| |||||||| ||||||||||||  |||
seq2  TCTCACTC-AAAACTCTAAACCT-GAGTCTAC-TAATGTGCAGCATAAGA  128

seq1  GAACTAATACAACTTGAAGTTGTCCT-CATAATATGACTTCAGCTAGGCT  199
      | ||| ||||||| |||   |||||| ||||||||||| |||||||||||
seq2  G-ACT-ATACAAC-TGA--GTGTCCTCCATAATATGAC-TCAGCTAGGCT  172

seq1  GTAGCTCAGTTGGTAAAGTATCACCTTAGCATTCCAGTGGCCCTGTGTGT  249
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCAGT--GTAAAGTATCACCTTAGCATTCCAGTGGCCCTGTGTGT  220

seq1  TCAATCTTTAGCTCTGATTAAACTGGAGTGGTGTTGCACAAGCTTATAAT  299
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCAATCTTTAGCTCTGATTAAACTGGAGT-GTGTTGCACAAGCTTATAAT  269

seq1  CCTGGCACCCAGTAGGTAGAAACAGGAAGATCAAGAGTTTAAGTTCATCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCACCCAGTAGGTAGAAACAGGAAGATCAAGAGTTTAAGTTCATCT  319

seq1  CTCGGCCAGCTCCTGACAAATCTGGGCTACATGAGACCGTAGATCAAAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCCAGCTCCTGACAAATCTGGGCTACATGAGACCGTAGATCAAAAC  369

seq1  AATATCATAAGATAGTGCTTGAGAACATGAAGCATTGTAGACTCTCAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATAAGATAGTGCTTGAGAACATGAAGCATTGTAGACTCTCAGGA  419

seq1  ATGTAAGAAACTTGTAAGATGCTGTGGGAAATGTTATATTTATCTAGGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGAAACTTGTAAGATGCTGTGGGAAATGTTATATTTATCTAGGGC  469

seq1  CCTATGCATATCTCAGTCTACATGTATGCCAATCTGAACATTGTCAGGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCATATCTCAGTCTACATGTATGCCAATCTGAACATTGTCAGGTC  519

seq1  TGAAGGTCGTTTTATATACTTTCCTGCATGTGTCAGCCAGTAAATGGTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTCGTTTTATATACTTTCCTGCATGTGTCAGCCAGTAAATGGTCT  569

seq1  GGGGACTCCATTTTATTGGTTATTTTATCGTTTTCTGTGTAGATAAACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTCCATTTTATTGGTTATTTTATCGTTTTCTGTGTAGATAAACAT  619

seq1  GAGTCACATACAATAATATTACAAGATTTCACCTGTGATTTTAAAAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACATACAATAATATTACAAGATTTCACCTGTGATTTTAAAAAAAA  669

seq1  TACTTGATGCTATAAGCAACCCAACAAGGGAATTTGACTTATTTGTATGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGATGCTATAAGCAACCCAACAAGGGAATTTGACTTATTTGTATGG  719

seq1  TCTAGGAAAGACTTCCACACTTCAATTCTAGACACAACAATTTTCCTAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAAAGACTTCCACACTTCAATTCTAGACACAACAATTTTCCTAAC  769

seq1  TTTTTTTTCCTATTAAATTTATGATTTCCTTTTTCCACATTAAAATATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCTATTAAATTTATGATTTCCTTTTTCCACATTAAAATATTT  819

seq1  TACCCAACCAGAACTGTTTTGGCATAAAACAAATAAAAGAAGTAAGCCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAACCAGAACTGTTTTGGCATAAAACAAATAAAAGAAGTAAGCCCA  869

seq1  AATTATTCTTTTCTCAGGATAGACCCAGTTGTTTCTATCATCTGTGGAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCTTTTCTCAGGATAGACCCAGTTGTTTCTATCATCTGTGGAAT  919

seq1  TGTCTGATCCCTGTTTTGATAATGATAATGCATGTTCAACTTTCCTGCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGATCCCTGTTTTGATAATGATAATGCATGTTCAACTTTCCTGCAT  969

seq1  GTTTGAATTC  1009
      ||||||||||
seq2  GTTTGAATTC  979