BAC Information

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BAC

Clone NameB6Ng01-130E10
ChromosomeX (Build37)
Map Location 108,591,502 - 108,759,844
singlet/doubletdoublet
Overlap geneRps6ka6, EG664791, D030011N01Rik
Upstream geneLOC668530, LOC100043316, Pou3f4, Cylc1, LOC100042872
Downstream geneLOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1, EG623341, 2010106E10Rik, Zfp711, Pof1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130E10.bB6Ng01-130E10.g
ACCDH931633DH931634
length1,1151,034
definitionDH931633|Mus musculus domesticus DNA, BAC clone: B6Ng01-130E10, 5' end.DH931634|Mus musculus domesticus DNA, BAC clone: B6Ng01-130E10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,758,722 - 108,759,844)(108,591,502 - 108,592,537)
sequence
gaattctctgtttagctctgtaccccatttttaatagggttatttgtttc
tcagtagtctaacttcttgagttctttgtatatattggatattagccctc
tattggatgtagggttggtaaagatcttttcccaatctgtggattgctat
gatgtcctattgacagtgttctttgccttacagaagcttttctgtttatt
tatttatgcatttatttatgtatttatttaatgtatataagtacactgtt
gctgtgttcagacataccagaagagggcatcagatccccctacaaatggt
tgttagccaccatgtggttgctgggaattgaactcaggacatctggagga
gcagtccgtgctcttaaccactgaaacacctccagctccccgtttttctt
tttcttaatgtttatagtctttatacatttcagtttgtgtctgtgtttgg
aaaaatagccttctcctctctataggctaatttatgtgactcacctttac
ctgcaaacctagctaaagagtccaggtgttattttttttgttgttgttag
ctttcgcacgtacgcagacttctgtcttcaggtactgataatctctgtct
ccttctggtctttgactgtgtcaccttgtcacagtaccttttctatgaga
gatgtgaataaatatccatttatcccatatatgattccaccaaagactaa
cttgagtaccatggtatgtaagaaacatataagaacatgtttatattttt
ccacaatgtcagaatctattgaacagatacagtctcaagcaatttcaatg
ctagctagcttgtcagctttccccttgtcctttgcaactcttgtgaaagg
agcacgagttcgtatgttctaagtttaattaataatatttatttcagatc
ccacgtagcacaccataaagtaaatgtactagtctgtctatctatctgta
tgtctgtggacgtggatgtgagcatgtataaaagttgtaaatgagacaaa
ggggcaggattggagaggcttggaagctgatgtgagaaacaaatggaatg
ttgaagagtctctgtgctgataagaataatgatccgaagtgacctgctag
ggagaagtttctcaa
gaattcctttaatcccaggaattggaaggcagaggaagacacatctctag
gaatttaaagctagtctggtcttcattgagagttccattacagacagaac
tatatagagagaccctgtctcaaaaaatcagcagtatttgttagtcaatt
gtaatattctatttaatccagtcaggtaattttccaaacaaaatgaatga
atgaaaaatttagagatgaactgactttagaaagagttcagaaaaaacga
ggattacagatttcattaggaaaaataaactatgaatgtttgtggtcaaa
gtattcagtggtaacttcaggagctgggtgaactatccaggcataaaaaa
tgagttctgagtatgtagctaggaaacatgcagtgagagcctaggctcaa
tcctcagcatctcctaagtaaataatcagagcttcttagaaagctgagcc
tgaaagatcatttaaatcaatgagtttgatgccagcctgtgtacagtcag
aactcatctcaaaaataaaaataaaacaaacatgcaacataataatacat
ttcaaactgttcccaaaagactaaaatatgtttacatcttacaatattta
ctttttcttagtctctagctcagtaaatcttttatttaccctactttctg
acccagtctgtctttaatgatgactctctaataatctttcaaacataagc
attacttcccccatctcacacacacgcacacgcacacgcacaggagagag
agagagagagagagagagagagagagagagagagagagagactttctctg
tatgtggttcatatcactccgggttctaaagatgctttcaagtgaattca
gtgtgtcataaaccctaatcaatcaatttttattcatcagcaaggggatg
tactgaagatacttgtgtgcaaattatttaccacatatgctggatgactt
tgggtcactttttgtttacttgcttttaccttttcaactctaaccgataa
tatattattcggagagtattttgaggactataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_108758722_108759844
seq2: B6Ng01-130E10.b_49_1163 (reverse)

seq1  TTGAGAAACTTCTTCCCTGCAGGTCACTTCTGGATCATTA-TCTTATCAG  49
      ||||||||||||| ||  |||||||||||| ||||||||| |||||||||
seq2  TTGAGAAACTTCTCCCTAGCAGGTCACTTC-GGATCATTATTCTTATCAG  49

seq1  CACAGAGACTC-TCAACATTCCCATTTGTTTCTCAACATCAGCTTCCCAG  98
      ||||||||||| |||||||| ||||||||||||| |||||||||| ||| 
seq2  CACAGAGACTCTTCAACATT-CCATTTGTTTCTC-ACATCAGCTT-CCAA  96

seq1  GCCTCTTCAAATTCCTTGCCCCTTTGTCCTCATTTTACAACTTTTATACA  148
      |||||| |||  ||| ||||||||||| |||| |||||||||||||||||
seq2  GCCTCTCCAA--TCC-TGCCCCTTTGT-CTCA-TTTACAACTTTTATACA  141

seq1  TGCTCACATCCACGTCCACAGACATACAGATAGATAGACAGACTAGTACA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACATCCACGTCCACAGACATACAGATAGATAGACAGACTAGTACA  191

seq1  TTTACTTTATGGTGTGCTACGTGGGATCTGAAATAAATATTATTAATTAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTATGGTGTGCTACGTGGGATCTGAAATAAATATTATTAATTAA  241

seq1  ACTTAGAACATACGAACTCGTGCTCCTTTCACAAGAGTTGCAAAGGACAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAACATACGAACTCGTGCTCCTTTCACAAGAGTTGCAAAGGACAA  291

seq1  GGGGAAAGCCTGACAAGCTAGCTAGCATTGAAATTGCTTGAGACTGTATC  348
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAG-CTGACAAGCTAGCTAGCATTGAAATTGCTTGAGACTGTATC  340

seq1  TGTTCAATAGATTCTGACATTGTGGAAAAATATAAACATGTTCTTATATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAATAGATTCTGACATTGTGGAAAAATATAAACATGTTCTTATATG  390

seq1  TTTCTTACATACCATGGTACTCAAGTTAGTCTTTGGTGGAATCATATATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTACATACCATGGTACTCAAGTTAGTCTTTGGTGGAATCATATATG  440

seq1  GGATAAATGGATATTTATTCACATCTCTCATAGAAAAGGTACTGTGACAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAATGGATATTTATTCACATCTCTCATAGAAAAGGTACTGTGACAA  490

seq1  GGTGACACAGTCAAAGACCAGAAGGAGACAGAGATTATCAGTACCTGAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACACAGTCAAAGACCAGAAGGAGACAGAGATTATCAGTACCTGAAG  540

seq1  ACAGAAGTCTGCGTACGTGCGAAAGCTAACAACAACAAAAAAAATAACAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGTCTGCGTACGTGCGAAAGCTAACAACAACAAAAAAAATAACAC  590

seq1  CTGGACTCTTTAGCTAGGTTTGCAGGTAAAGGTGAGTCACATAAATTAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTCTTTAGCTAGGTTTGCAGGTAAAGGTGAGTCACATAAATTAGC  640

seq1  CTATAGAGAGGAGAAGGCTATTTTTCCAAACACAGACACAAACTGAAATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAGAGGAGAAGGCTATTTTTCCAAACACAGACACAAACTGAAATG  690

seq1  TATAAAGACTATAAACATTAAGAAAAAGAAAAACGGGGAGCTGGAGGTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGACTATAAACATTAAGAAAAAGAAAAACGGGGAGCTGGAGGTGT  740

seq1  TTCAGTGGTTAAGAGCACGGACTGCTCCTCCAGATGTCCTGAGTTCAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGGTTAAGAGCACGGACTGCTCCTCCAGATGTCCTGAGTTCAATT  790

seq1  CCCAGCAACCACATGGTGGCTAACAACCATTTGTAGGGGGATCTGATGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAACCACATGGTGGCTAACAACCATTTGTAGGGGGATCTGATGCC  840

seq1  CTCTTCTGGTATGTCTGAACACAGCAACAGTGTACTTATATACATTAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGGTATGTCTGAACACAGCAACAGTGTACTTATATACATTAAAT  890

seq1  AAATACATAAATAAATGCATAAATAAATAAACAGAAAAGCTTCTGTAAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATAAATAAATGCATAAATAAATAAACAGAAAAGCTTCTGTAAGG  940

seq1  CAAAGAACACTGTCAATAGGACATCATAGCAATCCACAGATTGGGAAAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAACACTGTCAATAGGACATCATAGCAATCCACAGATTGGGAAAAG  990

seq1  ATCTTTACCAACCCTACATCCAATAGAGGGCTAATATCCAATATATACAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTACCAACCCTACATCCAATAGAGGGCTAATATCCAATATATACAA  1040

seq1  AGAACTCAAGAAGTTAGACTACTGAGAAACAAATAACCCTATTAAAAATG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAAGAAGTTAGACTACTGAGAAACAAATAACCCTATTAAAAATG  1090

seq1  GGGTACAGAGCTAAACAGAGAATTC  1123
      |||||||||||||||||||||||||
seq2  GGGTACAGAGCTAAACAGAGAATTC  1115

seq1: chrX_108591502_108592537
seq2: B6Ng01-130E10.g_71_1104

seq1  GAATTCCTTTAATCCCAGGAATTGGAAGGCAGAGGAAGACACATCTCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAATCCCAGGAATTGGAAGGCAGAGGAAGACACATCTCTAG  50

seq1  GAATTTAAAGCTAGTCTGGTCTTCATTGAGAGTTCCATTACAGACAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAAAGCTAGTCTGGTCTTCATTGAGAGTTCCATTACAGACAGAAC  100

seq1  TATATAGAGAGACCCTGTCTCAAAAAATCAGCAGTATTTGTTAGTCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGAGAGACCCTGTCTCAAAAAATCAGCAGTATTTGTTAGTCAATT  150

seq1  GTAATATTCTATTTAATCCAGTCAGGTAATTTTCCAAACAAAATGAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATTCTATTTAATCCAGTCAGGTAATTTTCCAAACAAAATGAATGA  200

seq1  ATGAAAAATTTAGAGATGAACTGACTTTAGAAAGAGTTCAGAAAAAACGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAATTTAGAGATGAACTGACTTTAGAAAGAGTTCAGAAAAAACGA  250

seq1  GGATTACAGATTTCATTAGGAAAAATAAACTATGAATGTTTGTGGTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTACAGATTTCATTAGGAAAAATAAACTATGAATGTTTGTGGTCAAA  300

seq1  GTATTCAGTGGTAACTTCAGGAGCTGGGTGAACTATCCAGGCATAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAGTGGTAACTTCAGGAGCTGGGTGAACTATCCAGGCATAAAAAA  350

seq1  TGAGTTCTGAGTATGTAGCTAGGAAACATGCAGTGAGAGCCTAGGCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTGAGTATGTAGCTAGGAAACATGCAGTGAGAGCCTAGGCTCAA  400

seq1  TCCTCAGCATCTCCTAAGTAAATAATCAGAGCTTCTTAGAAAGCTGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCATCTCCTAAGTAAATAATCAGAGCTTCTTAGAAAGCTGAGCC  450

seq1  TGAAAGATCATTTAAATCAATGAGTTTGATGCCAGCCTGTGTACAGTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATCATTTAAATCAATGAGTTTGATGCCAGCCTGTGTACAGTCAG  500

seq1  AACTCATCTCAAAAATAAAAATAAAACAAACATGCAACATAATAATACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATCTCAAAAATAAAAATAAAACAAACATGCAACATAATAATACAT  550

seq1  TTCAAACTGTTCCCAAAAGACTAAAATATGTTTACATCTTACAATATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTGTTCCCAAAAGACTAAAATATGTTTACATCTTACAATATTTA  600

seq1  CTTTTTCTTAGTCTCTAGCTCAGTAAATCTTTTATTTACCCTACTTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTAGTCTCTAGCTCAGTAAATCTTTTATTTACCCTACTTTCTG  650

seq1  ACCCAGTCTGTCTTTAATGATGACTCTCTAATAATCTTTCAAACATAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTCTGTCTTTAATGATGACTCTCTAATAATCTTTCAAACATAAGC  700

seq1  ATTACTTCCCCCATCTCACACACACGCACACGCACACGCACAGGAGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTCCCCCATCTCACACACACGCACACGCACACGCACAGGAGAGAG  750

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTTTCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTTTCTCTG  800

seq1  TATGT-GTTCATATCACT-CGGGTTCTAAAGATGCTTTCAAGTGAATTCA  848
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  TATGTGGTTCATATCACTCCGGGTTCTAAAGATGCTTTCAAGTGAATTCA  850

seq1  GTGTGTCATAAA-CCTAATCAATCAA-TTTTATTCATCAGCAAGGTGATG  896
      |||||||||||| ||||||||||||| |||||||||||||||||| ||||
seq2  GTGTGTCATAAACCCTAATCAATCAATTTTTATTCATCAGCAAGGGGATG  900

seq1  TACTG-AGATACTTGTGTGCAAATTATTTACACCATATGCTGTATGACTT  945
      ||||| |||||||||||||||||||||||||  ||||||||| |||||||
seq2  TACTGAAGATACTTGTGTGCAAATTATTTACCACATATGCTGGATGACTT  950

seq1  T-GGTCAC-TTTTGTTATCTTGCCTTTTACTTTTTCAACTTCTAAACTGA  993
      | |||||| |||||||  |||| ||||||| |||||||| ||| ||| ||
seq2  TGGGTCACTTTTTGTTTACTTG-CTTTTACCTTTTCAAC-TCT-AACCGA  997

seq1  TTTAATTATATGTATTCTGTAGAGTAATTTTGAGGACTATAAA  1036
      |   | ||||| ||||| | ||||| |||||||||||||||||
seq2  T---AATATAT-TATTC-GGAGAGT-ATTTTGAGGACTATAAA  1034