BAC Information

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BAC

Clone NameB6Ng01-130I20
ChromosomeX (Build37)12 (Build37)
Map Location 159,287,136 - 159,287,85255,893,816 - 55,894,607
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNhs, Reps2, LOC654358, LOC100041557, LOC667630, Rbbp7, 4932441K18Rik, LOC671250
Downstream geneSyap1, LOC100041607, Ctps2, S100g, LOC100040610, EG637051, Grpr, 1700045I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130I20.bB6Ng01-130I20.g
ACCDH931836DH931837
length715482
definitionDH931836|Mus musculus domesticus DNA, BAC clone: B6Ng01-130I20, 5' end.DH931837|Mus musculus domesticus DNA, BAC clone: B6Ng01-130I20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(159,287,136 - 159,287,852)(55,893,816 - 55,894,607)
sequence
gaattccaggacagccagggctatacagagaaaccctgtctcaaaaaaaa
cagaaacaaaacaaaacaaaaaacaaaactcaattttaggggctggagag
atgactcagcggttatgagcactggctgcccttcctggaggtcctgagtt
tatttcccaagcataggtccgtttcccttcaccatcagcggatcaggagg
aaacagctctacttgactatggtgtttccagagttctttgatattactaa
cgcctcaggtcctacagatcatttgtgtttggccaaatatttatgaataa
tgtggcagatattgttttccttgttttgggtaactagtaacttctcagct
cgattttctaattctctatgatatagctctccccgtttttcttttggttt
ttcgagacagggtttctctgtgtagtcctggctgtcctggagctcactct
gtacaccaggctgacctcgaactcagaaatctgcctgcctctgcctccta
aatgctgggattaaaggtgtgcgccaccacgcccggccctttttttcaaa
ataaataattcatttcccagcaaccacaaggtggctcacaaccatctgta
atgggatctgctgccctcttctgctgtgtctgaaggtagctacagtgtgc
agtggttagttaagatcacttttagctccttgcagaagactggagttcat
tcccagcacccacat
ttttccttcttttttgcttttcatttgttggtttggtttggtttggtttg
gtctggtttggcttagagagggttggtttgtaggttgttttgttttgttt
ttcaagacagggtttctctgtgtaccccttgaatgtcctagaactcactc
tgtagaccaagctcagagatttgcctgcctcctgcctcctgagtggcgaa
aaagcatgcaccaccactgccagcccacagaataaactttaaaaaacact
tcaaagaagaagtgctagctaacagaggagtcaatggagaagaaagatgt
tgaagatgaaagagtaagggataaccagacagtggcggcacatgccttta
atcccagcacttgggaggcagaggcaggtggatagattcctgagtttgag
gccagcctggtctacagagtgagttttcaagacagccagggctatacaga
gaaactgtctcgagaaaggaagaaagaaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_159287136_159287852
seq2: B6Ng01-130I20.b_47_761

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAA  50

seq1  CAGAAACAAAACAAAACAAAAAACAAAACTCAATTTTAGGGGCTGGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACAAAACAAAACAAAAAACAAAACTCAATTTTAGGGGCTGGAGAG  100

seq1  ATGACTCAGCGGTTATGAGCACTGGCTGCCCTTCCTGGAGGTCCTGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCAGCGGTTATGAGCACTGGCTGCCCTTCCTGGAGGTCCTGAGTT  150

seq1  TATTTCCCAAGCATAGGTCCGTTTCCCTTCACCATCAGCGGATCAGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCAAGCATAGGTCCGTTTCCCTTCACCATCAGCGGATCAGGAGG  200

seq1  AAACAGCTCTACTTGACTATGGTGTTTCCAGAGTTCTTTGATATTACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTCTACTTGACTATGGTGTTTCCAGAGTTCTTTGATATTACTAA  250

seq1  CGCCTCAGGTCCTACAGATCATTTGTGTTTGGCCAAATATTTATGAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCAGGTCCTACAGATCATTTGTGTTTGGCCAAATATTTATGAATAA  300

seq1  TGTGGCAGATATTGTTTTCCTTGTTTTGGGTAACTAGTAACTTCTCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAGATATTGTTTTCCTTGTTTTGGGTAACTAGTAACTTCTCAGCT  350

seq1  CGATTTTCTAATTCTCTATGATATAGCTCTCCCCGTTTTTCTTTTGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTTCTAATTCTCTATGATATAGCTCTCCCCGTTTTTCTTTTGGTTT  400

seq1  TTCGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAGCTCACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAGCTCACTCT  450

seq1  GTACACCAGGCTGACCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACCAGGCTGACCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCTA  500

seq1  AATGCTGGGATTAAAGGTGTGCGCCACCACGCCCGGCCCTTTTTTTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGGGATTAAAGGTGTGCGCCACCACGCCCGGCCCTTTTTTTCAAA  550

seq1  ATAAATAATTCATTTCCCAGCAACCACAAGGTGGCTCACAACCATCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAATTCATTTCCCAGCAACCACAAGGTGGCTCACAACCATCTGTA  600

seq1  ATGGGATCTGCTGCCCTCTTCTGCTGTGTCTGAAGGTAGCTACAGTGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATCTGCTGCCCTCTTCTGCTGTGTCTGAAGGTAGCTACAGTGTGC  650

seq1  AGTGGTTAAGTTAAGAACACTTTTTAGCT-CTTGCAGAGGACTGGAGTTC  699
      ||||||| |||||||| ||| |||||||| |||||||| |||||||||||
seq2  AGTGGTT-AGTTAAGATCAC-TTTTAGCTCCTTGCAGAAGACTGGAGTTC  698

seq1  AGTTCCCAGCACCCACAT  717
      | ||||||||||||||||
seq2  A-TTCCCAGCACCCACAT  715

seq1: chr12_55893816_55894607
seq2: B6Ng01-130I20.g_165_539 (reverse)

seq1  TTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTG-GAACTCA  49
      ||| ||||||||  ||||||||||||||||||||||||| ||  ||||||
seq2  TTTCTCGAGACA--GTTTCTCTGTATAGCCCTGGCTGTCTTGAAAACTCA  48

seq1  CTTTGTAGACCAGGCTAGCCTCGAACTCAGAA----ATCCACCTGCCTCT  95
      || ||||||||||||| ||||| ||||||| |    ||||||||||||||
seq2  CTCTGTAGACCAGGCTGGCCTCAAACTCAGGAATCTATCCACCTGCCTCT  98

seq1  GCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCCGGCAAAAGACAGTTTT  145
      ||||||| |||||||||||||||||| || |||                 
seq2  GCCTCCCAAGTGCTGGGATTAAAGGCATGTGCC-----------------  131

seq1  TTATCTAAAACAAGGAAGACTACATGCTTTTAGAACAATCAGTTTAACTG  195
                               ||                   ||||
seq2  -------------------------GC------------------CACTG  138

seq1  AAACTAAAACTAATCTCGTTTCATCAATTAACTGCTAGTTTCTCCTATTT  245
                   ||| |||                              
seq2  -------------TCTGGTT------------------------------  145

seq1  TATTTCCAGAATCAAGGATCGAGGCCAAGGTCTTACACTCACCTCTCATT  295
                       |||           |||||      || |||| 
seq2  -----------------ATC----------CCTTAC-----TCTTTCATC  163

seq1  TTCAACCCCACTTCTTTTCCCTTAAAGTCCAAAATATGCTGGGCAGTGGC  345
      ||||||  |  ||||| ||                        || || |
seq2  TTCAACATC-TTTCTTCTC------------------------CATTGAC  188

seq1  TCATGCCTTTAAGCTTAGTACTGAGGAGGAGGGGCAAGCAAGTCTTTATG  395
      || |  || | ||||                     ||||  |||     
seq2  TCCT--CTGTTAGCT---------------------AGCACTTCT-----  210

seq1  AATTCCTGGCCAGTCATAGCTACAAAGCAAGACCCTGTCTCAAAACATCA  445
                                                        
seq2  --------------------------------------------------  210

seq1  AACAAAACAAACCCCAAAATACAATTAGTAAATTCTAATTCTGTCTTATC  495
                                                        
seq2  --------------------------------------------------  210

seq1  CAAATCTCTCTCTCTCTCTCTCTTTGTAATTAATACACATAAGCATTGTT  545
                          ||||||              |||   ||||
seq2  --------------------TCTTTG--------------AAG---TGTT  223

seq1  TTATAGTTAACTAGAGGTTAAATTTTAGAAACCAGAAATCAAATGAAGCT  595
      ||               ||||| ||||                       
seq2  TT---------------TTAAAGTTTA-----------------------  235

seq1  GCTATGTAAACTGAGGGAGTTCATTTATCATTTACAAAAGTATCTGGAAG  645
                         |||                    | |||  |
seq2  -------------------TTC--------------------TGTGG--G  244

seq1  CTGGGAATGGTGGCACACGCCTTTAATCCCAGCATTTAGGAGGCA-GAGG  694
      |||| | ||||||  || || |||  || |  || | |||||||| ||||
seq2  CTGGCAGTGGTGGTGCATGCTTTT--TCGC--CACTCAGGAGGCAGGAGG  290

seq1  CAGGTGTATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCA  744
      ||||   || ||||           ||| ||||||||||||||||||| |
seq2  CAGGCAAATCTCTG-----------AGCTTGGTCTACAGAGTGAGTTCTA  329

seq1  GGACA-GCCAGGGCTACACAGAGAAACCCTGTCTTGGAAAAAAACAAAA  792
      |||||  | |||| ||||||||||||||||||||||   ||||||||||
seq2  GGACATTCAAGGGGTACACAGAGAAACCCTGTCTTG---AAAAACAAAA  375