BAC Information

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BAC

Clone NameB6Ng01-131M01
Chromosome8 (Build37)X (Build37)
Map Location 126,000,239 - 126,000,585133,151,558 - 133,152,648
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8
Downstream geneAfg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131M01.bB6Ng01-131M01.g
ACCDH932730DH932731
length3381,045
definitionDH932730|Mus musculus domesticus DNA, BAC clone: B6Ng01-131M01, 5' end.DH932731|Mus musculus domesticus DNA, BAC clone: B6Ng01-131M01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(126,000,239 - 126,000,585)(133,151,558 - 133,152,648)
sequence
gaattcagcatagcgacacacttggcttattcaaacattaacagaaagat
tacatgttagaaaaagggcatcaggactttgttcctgtgggctgggggtt
tatctttgttcacatagcaaccagttgatgtatgactttaccaggcatcg
aggggcagtagacagtggggaggttccggccgggtagtgttgacctagac
aagatagccctgcttgtacaatcaagctgttcttaggaatgtcttaacaa
aagccctgtctgttctgctttgttctaggccccaggccgcaggctcatag
acaacatgaatcacaagatacaaaatcttattttcttt
gaattccatctacaccatattcacactgttcccacattatttctggtatt
atgtgtggcactgtatgtctgtacaatgaagagtactgctgcgttacatg
cggtgccaaagccttactcctacagaacttcttgtagccatgtgttcaat
atcttggatatttagctgaggatccattggagatggcttcaggtaggaac
aatctgtgaaatgaaaagaagactgtctgcaatatggatttatcctgtgc
cagtccagtcatttctgtcgtagaagtcacattgcccaatgagggggttt
ggtccacagacctttgggttaagcttgggaagaatgggataacagctttc
ctcttattagagagcttctccactacatttaaaaatccagcaccttgctt
ttgttctctgtaaatagaatcctgatgtgaaatctacagtgtagacttcc
ctattcctttcgccctttcactgaaatctgacttaacttcaagattagca
tgtggtacagatacactcttaggggatatgtaacctggcacagcctcttt
ggaagtccatatagaaggtcaaaacaaaagaaaaactattaaaaataggg
gagatggctcaatgggttatatgatccccacgggagcgtgaagagctaag
tataaacacccagcctccccataaagccagatgtggttgtacaggtctgt
agttccagcaccccagtggcaagatgggagggagagacaggagactccct
gtggggcattgggctatgcacaggcagtctggtctccagtagagctgagg
tcggaaccccgggaccaggtggtgataattcacctacctgggacagagga
gttctctcatgtctcctgtcaaagttaccacccccctcagcccccacaag
agaagcatggctagtagtcatgtaggcaatgtcccaagctcctgacctca
gggtagactcctcccagttactagaaacagtaaagtgacagcataacata
agagggactgcttggcccaactgctctctccctctcttactttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_126000239_126000585
seq2: B6Ng01-131M01.b_42_379

seq1  GAATTCAGCATAGTGACACACTATTGGCTTATTTAAACATTAACAGAAAG  50
      ||||||||||||| |||||||  |||||||||| ||||||||||||||||
seq2  GAATTCAGCATAGCGACACAC--TTGGCTTATTCAAACATTAACAGAAAG  48

seq1  ATTACATGTTAGCAAAAGGGCATCAGGACTTTGTTCCTGTGGGCTAGGGG  100
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  ATTACATGTTAGAAAAAGGGCATCAGGACTTTGTTCCTGTGGGCTGGGGG  98

seq1  CTTATC-TTGTTCACATAGCAACCAGTTGATGTATGACTTTACCCGGCAT  149
       ||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTATCTTTGTTCACATAGCAACCAGTTGATGTATGACTTTACCAGGCAT  148

seq1  CAAGGGGCAGTGGACAGAGGGGAGGTTCCAGCCAGGTGGTGTTGACCCAG  199
      | ||||||||| ||||| ||||||||||| ||| ||| ||||||||| ||
seq2  CGAGGGGCAGTAGACAGTGGGGAGGTTCCGGCCGGGTAGTGTTGACCTAG  198

seq1  ACAAGATAGCCCTGCTTGTACAATCAAGCTGTTCTTAGGAATGTCTTAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATAGCCCTGCTTGTACAATCAAGCTGTTCTTAGGAATGTCTTAAC  248

seq1  AACAGCCCTGTCTGTTCTGCTTTGTTCTCAGCCCCAGGCCACGGGCTCAT  299
      || |||||||||||||||||||||||||  |||||||||| | |||||||
seq2  AAAAGCCCTGTCTGTTCTGCTTTGTTCTAGGCCCCAGGCCGCAGGCTCAT  298

seq1  AGACAACTCTTTTACATGAATCACAAGATACAAAATCTCATTTTCTTT  347
      |||||        ||||||||||||||||||||||||| |||||||||
seq2  AGACA--------ACATGAATCACAAGATACAAAATCTTATTTTCTTT  338

seq1: chrX_133151558_133152648
seq2: B6Ng01-131M01.g_69_1113

seq1  GAATTCCATCTACACCATATTCACACTGTTCCCACATTATTCCTGGTATT  50
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAATTCCATCTACACCATATTCACACTGTTCCCACATTATTTCTGGTATT  50

seq1  ATGTGTGGCACTGTATGTCTGTACAATGAAGAGTACTGCTGCGTTACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGGCACTGTATGTCTGTACAATGAAGAGTACTGCTGCGTTACATG  100

seq1  CGGTGCCAAAGCCTTACTCCTACAGAACTTCTTGTAGCCATGTGTTCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCCAAAGCCTTACTCCTACAGAACTTCTTGTAGCCATGTGTTCAAT  150

seq1  ATCTTGGATATTTAGCTGAGGATCCATTGGAGATGGCTTCAGGTAGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGATATTTAGCTGAGGATCCATTGGAGATGGCTTCAGGTAGGAAC  200

seq1  AATCTGTGAAATGAAAAGAAGACTGTCTGCAATGTGGATTTATCCTGTGC  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATCTGTGAAATGAAAAGAAGACTGTCTGCAATATGGATTTATCCTGTGC  250

seq1  CAGTCCAGTCATTTCTGTCGTAGAAGTCACATTGCCCCATGAGGGGGTTT  300
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGTCCAGTCATTTCTGTCGTAGAAGTCACATTGCCCAATGAGGGGGTTT  300

seq1  GGTCCACAGACCTTTGGGTCAAGCTTGGGAAGAATGGGATAACAGCTTTC  350
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGTCCACAGACCTTTGGGTTAAGCTTGGGAAGAATGGGATAACAGCTTTC  350

seq1  CTCTTATTAGAGAGCTTCTCCACTACATTTAAAAATCCAGCACCTTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATTAGAGAGCTTCTCCACTACATTTAAAAATCCAGCACCTTGCTT  400

seq1  TTGTTCTCTGTAAATAGAATCCTGATGTGAAATCGACAGTGTAGACTTCC  450
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGTTCTCTGTAAATAGAATCCTGATGTGAAATCTACAGTGTAGACTTCC  450

seq1  CTATTCCTTTCGCCCTTTCACTGAAATCTGACTTAACTTCAAGATTAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTTTCGCCCTTTCACTGAAATCTGACTTAACTTCAAGATTAGCA  500

seq1  TGTGGTACAGATACACTCTTAGGGGATATGTAACCTGGCACAGCCTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTACAGATACACTCTTAGGGGATATGTAACCTGGCACAGCCTCTTT  550

seq1  GGAAGTCCATATAGAAGGTCAAAACAAAAGAAAAACTATTAAAAATAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCCATATAGAAGGTCAAAACAAAAGAAAAACTATTAAAAATAGGG  600

seq1  GAGATGGCTCAATGGGTTATATGATCCCCACGGGAGCGTGAAGAGCTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAATGGGTTATATGATCCCCACGGGAGCGTGAAGAGCTAAG  650

seq1  TATAAACACCCAGGCTCCCCATAAAGCCAGATGTGGTTGTACAGGTCTGT  700
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATAAACACCCAGCCTCCCCATAAAGCCAGATGTGGTTGTACAGGTCTGT  700

seq1  AGTTCCAGCACCCCAGTGGCAAGATGGGAGGGAGAGACAGGAGACTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGCACCCCAGTGGCAAGATGGGAGGGAGAGACAGGAGACTCCCT  750

seq1  GTGGGGCACTGGGCTATGCACAGGCAGTCTGGTCTCCAGTAGAGCTGAGG  800
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCATTGGGCTATGCACAGGCAGTCTGGTCTCCAGTAGAGCTGAGG  800

seq1  TCGGAACCCCGGGACCAGGTGGTGATAATTCACCTACCTGGGACAGAAGG  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCGGAACCCCGGGACCAGGTGGTGATAATTCACCTACCTGGGACAG-AGG  849

seq1  AGTTCTCTCATGTCTCCTGTCAAAGTTACCACCCCCCTCAGCCCCCACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCTCATGTCTCCTGTCAAAGTTACCACCCCCCTCAGCCCCCACAA  899

seq1  GAGAAGCATGGCTAGTAGTCATGTAGGCGATGTCCCAAGCTCCTGATCTT  950
      |||||||||||||||||||||||||||| ||||||||||||||||| | |
seq2  GAGAAGCATGGCTAGTAGTCATGTAGGCAATGTCCCAAGCTCCTGA-CCT  948

seq1  CAGGGTAGACTCCTCCCCAGTTACCTAGAAACAGTAAAGTGACAGCATAA  1000
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  CAGGGTAGACTCCT-CCCAGTTA-CTAGAAACAGTAAAGTGACAGCATAA  996

seq1  CATAAGAGGGACTGCTTGGCCCCACCTTACTCTCTCCCTCTTCTCACCTC  1050
      |||||||||||||||||||||| ||  | ||||||||||| ||| | || 
seq2  CATAAGAGGGACTGCTTGGCCCAAC--TGCTCTCTCCCTC-TCTTA-CTT  1042

seq1  TCTTGCTCTTATTCCCTCTTACTCTCTCTTTCTTACTTTCT  1091
      |||                                      
seq2  TCT--------------------------------------  1045