BAC Information

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BAC

Clone NameB6Ng01-132D02
ChromosomeX (Build37)
Map Location 162,329,518 - 162,467,981
singlet/doubletdoublet
Overlap genenone
Upstream geneMospd2, Fancb, LOC627045, Glra2, LOC100040753
Downstream geneGemin8, Gpm6b, Ofd1, Trappc2, Rab9, LOC100040795, A630018P17Rik, Egfl6, LOC100041912, LOC641660, LOC667791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132D02.bB6Ng01-132D02.g
ACCDH933060DH933061
length1,1281,192
definitionDH933060|Mus musculus domesticus DNA, BAC clone: B6Ng01-132D02, 5' end.DH933061|Mus musculus domesticus DNA, BAC clone: B6Ng01-132D02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,466,833 - 162,467,981)(162,329,518 - 162,330,721)
sequence
tagcaccctctgggataggatagatttgctagctggtcagaataaacaag
agattgttttcctttgcaacacaacaaagtttgtttataggttctttaaa
agatttggattttctgagcataaggtcagtacaaactataatacaaaccc
attgtatagatagcactcactggagcccagttgggcactacacctattgg
aattaaggagacaaatttcatgcaggtatgcagcacatgtcgcctgctat
tctgtgagtaataaaattccctgttagattcaggggccttgtgtcttcta
cctgccactgtgaaactggtaaattaacaagttatcttggaagtaaggca
aaaagtcttagaatactcacgtttgctgcaagaagctcacagtgtgaatg
ataattatgaaccctattttatagattgaaacatgaggatttaaaaatga
tggggcatgccaaaatttacatagttattaaatgatagagacaaaaattg
actttaaggatgaggctttataaccagcactttcaggtacagaaatgaaa
tattcaagttgagaaaatccaagtgatataatgtttgatgaataacaatt
taggatctattttctttgcttatataatttaaataggtaggtgaaatatt
tatccttcatgcagtctcagaaaagtagggaatattttactgttgatcct
ctaggaatggattttttgttttggtatcatgaagtaagacaaatgaccaa
gaccaaataagctgtttcttactttgaaacctgtttgcctcagttgtggg
gcaggtttacccactgagagggagggagtaccaagagttcaaagttcagc
attctgactttgaaagataagagtattcaggtagttgggaatcaatggta
ttattttggcagtgtggtgggtcagaatcatttttcttggctgaaaaatg
tgtataaaaaacatgctctgggcaggacttacctcatagtgtgctttagt
tgtgggagtttctttgcactgtctctctgtgtggaatagcgacttgttga
aatttcgtcttctgtgggattccgaaagttctccttagcctcaaggacac
tggagaactagtggaatccagcttctct
gaattcttttctcggtgggactaccctgagtctgcatgtctttgtctgga
gagtgtccttgaacacaagtggcaagccttggatggtcttggctgaatga
aaagtgaccttattcaaagctctctgcaaagatgcataactcagcacaca
tgtcccactctggcttcccacctccatggttattatgtactgtacctatc
atcccttcctgctcacttgattctatgagtaattagccatttccacctgt
acctctaaaaaacaccttatataccctatacctgaaacaataaagtagcc
ttgtctcagtgcagtgggctccagaggccattctgtccttaccctgctcc
ccacgtctgctcccttttttccctcaggctggtggccaataacatccagg
gagaaagagaggggcataagataggagattagataaacattgaaggcata
gaaaatctattcaaggaaatcagcagaaattttgcaaaattacgtgaaca
aatagccatcaaatacaagaagcatttagaatgtcaaggtgctgaaaata
caaagcaaagaaacaacatattaagagatgagtgcttagaacacactaag
gagactgcagaattagggagtgagaaacacctaactcaaggtagagcaca
caggtgtacaaggcttacaacacacagtggaagctatggaagcaaagaat
ggactgtgaacatgaaggactaacctaaaagtacattttaaaacattttt
aaaatcgaccttttctcagattcctcattctcaaacttactcaccaggat
ggaacaactcagttcctgtaggactcctttcttggtaagctatgactcaa
ctattcaatatcatatccctactcagaatgatctatgaaattccatccac
aagggaccctgggtgtctccaagtacatgatttcttggtccttagtaaat
cttatttctggtaccaatgtggtcataaccctgctatgatttactctcat
tgaaactttgtaagtgatgtcttcttctgatgacatgattgccttgtctg
ccctcacctccactagggagtgctaagtcattttcagtctccatttataa
agatctgaaaatggtttgtaccttccaataccaaacaaaattgatctcaa
ttggagaagagtgtctggtataatctttttttccgaaaatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_162466833_162467981
seq2: B6Ng01-132D02.b_54_1181 (reverse)

seq1  AGAGAAGACTTGACTTCCACTAGTATCCTCAGTGTCCTTGAGGCTAAAGA  50
      ||||||| || || |||||||||| ||  |||||||||||||||||   |
seq2  AGAGAAG-CTGGA-TTCCACTAGT-TCTCCAGTGTCCTTGAGGCTA---A  44

seq1  TGAAAACTTTCGGAATACCCACAGAAGACAGAAATATCAAACAAAGTCGG  100
       || |||||||||||| |||||||||||| ||||| ||||   ||||| |
seq2  GGAGAACTTTCGGAAT-CCCACAGAAGAC-GAAATTTCAA--CAAGTC-G  89

seq1  CTATT-CACACAGGAGAGAACAGTGCAAAAGAAAACTCCCAACAACCTTA  149
      ||||| |||||| ||||| ||||||||||   |||||||| |||||    
seq2  CTATTCCACACA-GAGAG-ACAGTGCAAA--GAAACTCCC-ACAAC---T  131

seq1  AAAGCACACTATGAGGTAAGTCCTTGCCCAGAGCATTGTTTTTTATACCA  199
      ||||||||||||||||||||||| ||||||||||| ||||||||||| ||
seq2  AAAGCACACTATGAGGTAAGTCC-TGCCCAGAGCA-TGTTTTTTATA-CA  178

seq1  CATTTTTTCAGCCAAGAAAAATGATTCTGA-CCACCACACTGCCAAAATA  248
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CA-TTTTTCAGCCAAGAAAAATGATTCTGACCCACCACACTGCCAAAATA  227

seq1  ATACCATTGATTCCCAACTACCTGAATACTCTTATCTTTCAAAGTCAGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATTGATTCCCAACTACCTGAATACTCTTATCTTTCAAAGTCAGAA  277

seq1  TGCTGAACTTTGAACTCTTGGTACTCCCTCCCTCTCAGTGGGTAAACCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAACTTTGAACTCTTGGTACTCCCTCCCTCTCAGTGGGTAAACCTG  327

seq1  CCCCACAACTGAGGCAAACAGGTTTCAAAGTAAGAAACAGCTTATTTGGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAACTGAGGCAAACAGGTTTCAAAGTAAGAAACAGCTTATTTGGT  377

seq1  CTTGGTCATTTGTCTTACTTCATGATACCAAAACAAAAAATCCATTCCTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCATTTGTCTTACTTCATGATACCAAAACAAAAAATCCATTCCTA  427

seq1  GAGGATCAACAGTAAAATATTCCCTACTTTTCTGAGACTGCATGAAGGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCAACAGTAAAATATTCCCTACTTTTCTGAGACTGCATGAAGGAT  477

seq1  AAATATTTCACCTACCTATTTAAATTATATAAGCAAAGAAAATAGATCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTCACCTACCTATTTAAATTATATAAGCAAAGAAAATAGATCCT  527

seq1  AAATTGTTATTCATCAAACATTATATCACTTGGATTTTCTCAACTTGAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTATTCATCAAACATTATATCACTTGGATTTTCTCAACTTGAAT  577

seq1  ATTTCATTTCTGTACCTGAAAGTGCTGGTTATAAAGCCTCATCCTTAAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTTCTGTACCTGAAAGTGCTGGTTATAAAGCCTCATCCTTAAAG  627

seq1  TCAATTTTTGTCTCTATCATTTAATAACTATGTAAATTTTGGCATGCCCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTTGTCTCTATCATTTAATAACTATGTAAATTTTGGCATGCCCC  677

seq1  ATCATTTTTAAATCCTCATGTTTCAATCTATAAAATAGGGTTCATAATTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTAAATCCTCATGTTTCAATCTATAAAATAGGGTTCATAATTA  727

seq1  TCATTCACACTGTGAGCTTCTTGCAGCAAACGTGAGTATTCTAAGACTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCACACTGTGAGCTTCTTGCAGCAAACGTGAGTATTCTAAGACTTT  777

seq1  TTGCCTTACTTCCAAGATAACTTGTTAATTTACCAGTTTCACAGTGGCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTACTTCCAAGATAACTTGTTAATTTACCAGTTTCACAGTGGCAG  827

seq1  GTAGAAGACACAAGGCCCCTGAATCTAACAGGGAATTTTATTACTCACAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGACACAAGGCCCCTGAATCTAACAGGGAATTTTATTACTCACAG  877

seq1  AATAGCAGGCGACATGTGCTGCATACCTGCATGAAATTTGTCTCCTTAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAGGCGACATGTGCTGCATACCTGCATGAAATTTGTCTCCTTAAT  927

seq1  TCCAATAGGTGTAGTGCCCAACTGGGCTCCAGTGAGTGCTATCTATACAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAGGTGTAGTGCCCAACTGGGCTCCAGTGAGTGCTATCTATACAA  977

seq1  TGGGTTTGTATTATAGTTTGTACTGACCTTATGCTCAGAAAATCCAAATC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGTATTATAGTTTGTACTGACCTTATGCTCAGAAAATCCAAATC  1027

seq1  TTTTAAAGAACCTATAAACAAACTTTGTTGTGTTGCAAAGGAAAACAATC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGAACCTATAAACAAACTTTGTTGTGTTGCAAAGGAAAACAATC  1077

seq1  TCTTGTTTATTCTGACCAGCTAGCAAATCTATCCTATCCCAGAGGGTGCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTATTCTGACCAGCTAGCAAATCTATCCTATCCCAGAGGGTGCT  1127

seq1  A  1149
      |
seq2  A  1128

seq1: chrX_162329518_162330721
seq2: B6Ng01-132D02.g_67_1258

seq1  GAATTCTTTTCTCGGTGGGACTACCCTGAGTCTGCATGTCTTTGTCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTCGGTGGGACTACCCTGAGTCTGCATGTCTTTGTCTGGA  50

seq1  GAGTGTCCTTGAACACAAGTGGCAAGCCTTGGATGGTCTTGGCTGAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCCTTGAACACAAGTGGCAAGCCTTGGATGGTCTTGGCTGAATGA  100

seq1  AAAGTGACCTTATTCAAAGCTCTCTGCAAAGATGCATAACTCAGCACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGACCTTATTCAAAGCTCTCTGCAAAGATGCATAACTCAGCACACA  150

seq1  TGTCCCACTCTGGCTTCCCACCTCCATGGTTATTATGTACTGTACCTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCACTCTGGCTTCCCACCTCCATGGTTATTATGTACTGTACCTATC  200

seq1  ATCCCTTCCTGCTCACTTGATTCTATGAGTAATTAGCCATTTCCACCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCCTGCTCACTTGATTCTATGAGTAATTAGCCATTTCCACCTGT  250

seq1  ACCTCTAAAAAACACCTTATATACCCTATACCTGAAACAATAAAGTAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAAAAAACACCTTATATACCCTATACCTGAAACAATAAAGTAGCC  300

seq1  TTGTCTCAGTGCAGTGGGCTCCAGAGGCCATTCTGTCCTTACCCTGCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCAGTGCAGTGGGCTCCAGAGGCCATTCTGTCCTTACCCTGCTCC  350

seq1  CCACGTCTGCTCCCTTTTTTCCCTCAGGCTGGTGGCCAATAACATCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTCTGCTCCCTTTTTTCCCTCAGGCTGGTGGCCAATAACATCCAGG  400

seq1  GAGAAAGAGAGGGGCATAAGATAGGAGATTAGATAAACATTGAAGGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAGAGGGGCATAAGATAGGAGATTAGATAAACATTGAAGGCATA  450

seq1  GAAAATCTATTCAAGGAAATCAGCAGAAATTTTGCAAAATTACGTGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTATTCAAGGAAATCAGCAGAAATTTTGCAAAATTACGTGAACA  500

seq1  AATAGCCATCAAATACAAGAAGCATTTAGAATGTCAAGGTGCTGAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCATCAAATACAAGAAGCATTTAGAATGTCAAGGTGCTGAAAATA  550

seq1  CAAAGCAAAGAAACAACATATTAAGAGATGAGTGCTTAGAACACACTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAAAGAAACAACATATTAAGAGATGAGTGCTTAGAACACACTAAG  600

seq1  GAGACTGCAGAATTAGGGAGTGAGAAACACCTAACTCAAGGTAGAGCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGCAGAATTAGGGAGTGAGAAACACCTAACTCAAGGTAGAGCACA  650

seq1  CAGGTGTACAAGGCTTACAACACACAGTGGAAGCTATGGAAGCAAAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTACAAGGCTTACAACACACAGTGGAAGCTATGGAAGCAAAGAAT  700

seq1  GGACTGTGAACATGAAGGACTAACCTAAAAGTACATTTTAAAACATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTGAACATGAAGGACTAACCTAAAAGTACATTTTAAAACATTTTT  750

seq1  AAAATCGACCTTTTCTCAGATTCCTCATTCTCAAACTTACTCACCAGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCGACCTTTTCTCAGATTCCTCATTCTCAAACTTACTCACCAGGAT  800

seq1  GGAACAACTCAGTTCCTGTAGGACTCCTTTCTTGGTAAGCTATGACTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAACTCAGTTCCTGTAGGACTCCTTTCTTGGTAAGCTATGACTCAA  850

seq1  CTATTCAATATCATATCCCTACTCAGAATGATCTATGAAATTCCATCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAATATCATATCCCTACTCAGAATGATCTATGAAATTCCATCCAC  900

seq1  AAGGGACCCTGGGTGTCTCCAAGTACATGATTTCTTGGTCCTTAGTAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACCCTGGGTGTCTCCAAGTACATGATTTCTTGGTCCTTAGTAAAT  950

seq1  CTTATTTCTGGTACCAATGTGGTTCATAACCCTGCTATGATTTACTCTTC  1000
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  CTTATTTCTGGTACCAATGTGG-TCATAACCCTGCTATGATTTACTC-TC  998

seq1  ATTTGAAACTTTGTTAGTGATGTCTTCTTCTGATGACAATGATTGCTTTG  1050
      | |||||||||||| |||||||||||||||||||||| |||||||| |||
seq2  A-TTGAAACTTTGTAAGTGATGTCTTCTTCTGATGAC-ATGATTGCCTTG  1046

seq1  TTCTGCACTCACCTTCCACTTAGTGAGTGCTAAGTCATTTTCATTCT-CA  1099
       ||||| |||||| ||||| ||| ||||||||||||||||||| ||| ||
seq2  -TCTGCCCTCACC-TCCAC-TAGGGAGTGCTAAGTCATTTTCAGTCTCCA  1093

seq1  TTTATAAAGATCTGAATATGTTTTTGTATCTTTC-ATATCAGACAAAATT  1148
      |||||||||||||||| |||  |||||| ||| | ||| || ||||||||
seq2  TTTATAAAGATCTGAAAATG-GTTTGTACCTTCCAATACCAAACAAAATT  1142

seq1  GATC-AAATTGGAGAAGAGTGGTCTTGTGATTATTCTTTTTTTTTCTAGA  1197
      ||||  |||||||||||||| |||| ||   || ||||||||    |   
seq2  GATCTCAATTGGAGAAGAGT-GTCTGGT--ATAATCTTTTTT----TCCG  1185

seq1  AAAATAG  1204
      |||||||
seq2  AAAATAG  1192