BAC Information

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BAC

Clone NameB6Ng01-132E12
ChromosomeX (Build37)X (Build37)
Map Location 99,930,915 - 99,932,065100,012,597 - 100,013,459
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC632454, LOC668302, EG212753, 8030474K03Rik, LOC668308, LOC100042465, H3f3a-ps1, EG621083, Rgag4, LOC100042480, LOC331476, Pin4, LOC670921, Ercc6l, LOC668318, Rps4x, LOC100043080, Cited1, Hdac8, Phka1, LOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343
Downstream geneLOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik, EG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik, EG331480, EG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1, Tsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132E12.bB6Ng01-132E12.g
ACCDH933124DH933125
length1,136866
definitionDH933124|Mus musculus domesticus DNA, BAC clone: B6Ng01-132E12, 5' end.DH933125|Mus musculus domesticus DNA, BAC clone: B6Ng01-132E12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,930,915 - 99,932,065)(100,012,597 - 100,013,459)
sequence
gaattccagcggccatttttggtcaccacccctaactctacaaccatgga
atttgaaacctaaatacagatatgatctgtttctcctggaattctgactc
tacctaaatcgagggtatgggaccagatgatcaaagacaggtgtggggtt
gggggcaaacttggtctcagggaacctgtactttgctctgaaagtgccac
cctgatgggagaatcagaaacaactggggtgaagcacattgctgctaaga
tcttccagacctgcaagagccaccttctcatatgtgtaactaacatgagt
ccttcaatctcctctgttagagaatctggtagagcctagtgcactgaaag
ttttgggaagaagagcagtggacacctagaaagaggcatcaagcttgagg
cccaagaagaatggctgacgcctccagcactcctatgagtgcccaacagt
gtccccccagttcagctgtcatgggtgagtgtctctggccaggtaggggt
ggtatcaattctgatgtggtaagcccaagggtttctggcaccattaggac
cacagaattgccactagaacttaggcaaaccttcctcccccttaacctgt
ccaaggtataagaggtcccgtcagcgagaagtgtctcctgtttacagaaa
acagaaatgttgtgtgtgaggtattgaaaagaaattgactggaacatgag
gcctcaaatgggagcagtgctttcagcagagtggtgggaagggagtttca
gccaagctctctatgttctattacagatcagcacctgtatcctcttgacc
agcctgaagtcctgctttcacacagatccccaacaggtaaggaaaattcg
ttgctacatggagaggcaccaagcaggcagtcatttttctggagaggttt
aactgtcctcaactctgagattcaacacattcctgtctggtacttgcatt
gtaggctttggaaaggcttcacttctatttgggcctcagtaacaccaaat
gcagaaaagaagcaaaaagcccctcaaaagaaaaacaaacagcagcacaa
caaccgacaacaggcagcgggaattttggatcacaggtttgagagcctgg
ggtggttcatggcattcatgtctaacatcccatctt
gaattctgggatagagccattcaggagatccacacagggaaatgtgagaa
gacagatgcatggtacctgagcatgggtaaccggacacatgacagaatgt
agatcaaaataaatggattattttaagttatgattctagtcagagaagag
cttagctatatgggcaaggtatttgtaaatatattttgagtctgagcctt
atttttgggaacataggactgggacaaagaatcagatgtaatttcaacat
ctaagaagttttataattgttgctgtataccatgtggtcatattaagatg
gtgaagtcacatggcaggttgcaagccatgtagctgacatgcttgatata
taaatatatatatatatatatatatatatatatatatatatatatatata
tatatatatatatatagatatatatatatatatacatacacacacacaca
cacacacacacaccacaatgagagttgcatcctaatcatatgcaaatata
cacatatggagataaacccaacttacatacacacagagttgaatttgatt
acatatatacacatatatgttcttaacaagagcagaaaaaagacaaatat
tgttccagattgtacaagttttaacttgtatattagcacatagagttcaa
acattttcatttagaaaaatattttttatgtgaaaaatattttaatgaga
attttatacataaatattttttcctacatcatgtgttacatactttcctg
taccatctgaattcctactaaaacgcttaaatttatacatatttatatat
gtatttatgagatgggggagagacagagatatattttcacacatatatag
gtatatatatgtttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_99930915_99932065
seq2: B6Ng01-132E12.b_48_1183

seq1  GAATTCCAGCGGCCATTTTTGGTCACCACCCCTAACTCTACAACCATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCGGCCATTTTTGGTCACCACCCCTAACTCTACAACCATGGA  50

seq1  ATTTGAAACCTAAATACAGATATGATCTGTTTCTCCTGGAATTCTGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAACCTAAATACAGATATGATCTGTTTCTCCTGGAATTCTGACTC  100

seq1  TACCTAAATCGAGGGTATGGGACCAGATGATCAAAGACAGGTGTGGGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAATCGAGGGTATGGGACCAGATGATCAAAGACAGGTGTGGGGTT  150

seq1  GGGGGCAAACTTGGTCTCAGGGAACCTGTACTTTGCTCTGAAAGTGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCAAACTTGGTCTCAGGGAACCTGTACTTTGCTCTGAAAGTGCCAC  200

seq1  CCTGATGGGAGAATCAGAAACAACTGGGGTGAAGCACATTGCTGCTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGGGAGAATCAGAAACAACTGGGGTGAAGCACATTGCTGCTAAGA  250

seq1  TCTTCCAGACCTGCAAGAGCCACCTTCTCATATGTGTAACTAACATGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGACCTGCAAGAGCCACCTTCTCATATGTGTAACTAACATGAGT  300

seq1  CCTTCAATCTCCTCTGTTAGAGAATCTGGTAGAGCCTAGTGCACTGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAATCTCCTCTGTTAGAGAATCTGGTAGAGCCTAGTGCACTGAAAG  350

seq1  TTTTGGGAAGAAGAGCAGTGGACACCTAGAAAGAGGCATCAAGCTTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGAAGAAGAGCAGTGGACACCTAGAAAGAGGCATCAAGCTTGAGG  400

seq1  CCCAAGAAGAATGGCTGACGCCTCCAGCACTCCTATGAGTGCCCAACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAAGAATGGCTGACGCCTCCAGCACTCCTATGAGTGCCCAACAGT  450

seq1  GTCCCCCCAGTTCAGCTGTCATGGGTGAGTGTCTCTGGCCAGGTAGGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCCAGTTCAGCTGTCATGGGTGAGTGTCTCTGGCCAGGTAGGGGT  500

seq1  GGTATCAATTCTGATGTGGTAAGCCCAAGGGTTTCTGGCACCATTAGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCAATTCTGATGTGGTAAGCCCAAGGGTTTCTGGCACCATTAGGAC  550

seq1  CACAGAATTGCCACTAGAACTTAGGCAAACCTTCCTCCCCCTTAACCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATTGCCACTAGAACTTAGGCAAACCTTCCTCCCCCTTAACCTGT  600

seq1  CCAAGGTATAAGAGGTCCCGTCAGCGAGAAGTGTCTCCTGTTTACAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTATAAGAGGTCCCGTCAGCGAGAAGTGTCTCCTGTTTACAGAAA  650

seq1  ACAGAAATGTTGTGTGTGAGGTATTGAAAAGAAATTGACTGGAACATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATGTTGTGTGTGAGGTATTGAAAAGAAATTGACTGGAACATGAG  700

seq1  GCCTCAAATGGGAGCAGTGCTTTCAGCAGAGTGGTGGGAAGGGAGTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAATGGGAGCAGTGCTTTCAGCAGAGTGGTGGGAAGGGAGTTTCA  750

seq1  GCCAAGCTCTCTATGTTCTATTACAGATCAGCACCTGTATCCTCTTGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCTCTCTATGTTCTATTACAGATCAGCACCTGTATCCTCTTGACC  800

seq1  AGCCTGAAGTCCTGC-TTCACACAGATCCCCAACAGGTAAGGAAAATTCG  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCCTGAAGTCCTGCTTTCACACAGATCCCCAACAGGTAAGGAAAATTCG  850

seq1  TTGCTACATGGAGAGGCACCAAGCAGGCAGTCA-TTTTCTGGAGAGTTTT  898
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  TTGCTACATGGAGAGGCACCAAGCAGGCAGTCATTTTTCTGGAGAGGTTT  900

seq1  AACTGTCCTCAACTCTGAGATTCAACAACAATCCTGTCTGGTACTTGCAT  948
      |||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  AACTGTCCTCAACTCTGAGATTCAAC-ACATTCCTGTCTGGTACTTGCAT  949

seq1  TGTAGGCTTTGGAAAGGCTTCACTTCTATTTGGGCCTCAGTAACACCAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCTTTGGAAAGGCTTCACTTCTATTTGGGCCTCAGTAACACCAAA  999

seq1  TGCAGAAAAAGAAGCAAAAAAAGCCCCCCCAAAAGAAAAACAAACAGCAG  1048
      ||||| ||||||||||||||    |||| |||||||||||||||||||||
seq2  TGCAG-AAAAGAAGCAAAAA---GCCCCTCAAAAGAAAAACAAACAGCAG  1045

seq1  CAACAAACAAACAGACAAACAAAGCAGCGAGA--TTTTGATCACCAAGTT  1096
      | ||||   ||| |||||   | |||||| ||  ||| ||||||  || |
seq2  C-ACAA--CAACCGACAA--CAGGCAGCGGGAATTTTGGATCAC--AGGT  1088

seq1  TTAGAGAGCTCTGTGGTGGTTCATGGCATTCATGTCCTTAAAACATTCCC  1146
      || |||||| ||| ||||||||||||||||||||||     |||| ||||
seq2  TT-GAGAGC-CTGGGGTGGTTCATGGCATTCATGTC----TAACA-TCCC  1131

seq1  ATCTT  1151
      |||||
seq2  ATCTT  1136

seq1: chrX_100012597_100013459
seq2: B6Ng01-132E12.g_69_934

seq1  GAATTCTGGGATAGAGCCATTCAGGAGATCCACACAGGGAAATGTGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGATAGAGCCATTCAGGAGATCCACACAGGGAAATGTGAGAA  50

seq1  GACAGATGCATGGTACCTGAGCATGGGTAACCGGACACATGACAGAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATGCATGGTACCTGAGCATGGGTAACCGGACACATGACAGAATGT  100

seq1  AGATCAAAATAAATGGATTATTTTAAGTTATGATTCTAGTCAGAGAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAAATAAATGGATTATTTTAAGTTATGATTCTAGTCAGAGAAGAG  150

seq1  CTTAGCTATATGGGCAAGGTATTTGTAAATATATTTTGAGTCTGAGCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTATATGGGCAAGGTATTTGTAAATATATTTTGAGTCTGAGCCTT  200

seq1  ATTTTTGGGAACATAGGACTGGGACAAAGAATCAGATGTAATTTCAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGGGAACATAGGACTGGGACAAAGAATCAGATGTAATTTCAACAT  250

seq1  CTAAGAAGTTTTATAATTGTTGCTGTATACCATGTGGTCATATTAAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGTTTTATAATTGTTGCTGTATACCATGTGGTCATATTAAGATG  300

seq1  GTGAAGTCACATGGCAGGTTGCAAGCCATGTAGCTGACATGCTTGATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTCACATGGCAGGTTGCAAGCCATGTAGCTGACATGCTTGATATA  350

seq1  TAAATATATATATATATATATATATATATATATATATATATATATATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATATATATATATATATATATATATATATATATATATATATATA  400

seq1  TATATATTCCTCCACTGGCTTAACAT-TTTATACACACACACACACACAC  449
      |||||||   |  | | | |  | || | |||| ||| ||||||||||||
seq2  TATATATATATATA-TAGATATATATATATATATACATACACACACACAC  449

seq1  ACACACACACACACCACAATGAGAGTTGCATCCAAATCATATGCAAATAT  499
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACACACACACACACCACAATGAGAGTTGCATCCTAATCATATGCAAATAT  499

seq1  ACACATATGGAGTTAAACCCAACTTACATACACACAGAGTTGAATTTGAT  549
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACACATATGGAGATAAACCCAACTTACATACACACAGAGTTGAATTTGAT  549

seq1  TACATATATACACATATATGTTCTTAACAAGAGCAGAAAAAAGACAAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATATACACATATATGTTCTTAACAAGAGCAGAAAAAAGACAAATA  599

seq1  TTGTTCCAGATTGTACAAGTTTTAACTTGTATATTAGCACATAGAGTTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCAGATTGTACAAGTTTTAACTTGTATATTAGCACATAGAGTTCA  649

seq1  AACATTTCATTTTAGAAAAATA-TTTTTATTTGAAAAATATTTTAATGAG  698
      |||||||   |||||||||||| ||||||| |||||||||||||||||||
seq2  AACATTTTCATTTAGAAAAATATTTTTTATGTGAAAAATATTTTAATGAG  699

seq1  AATTTTATACATAAATA-TTTTTCCTACATCAT-TGTTACATACTTTCCT  746
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  AATTTTATACATAAATATTTTTTCCTACATCATGTGTTACATACTTTCCT  749

seq1  GTACCATTTGAATTCCTACTAAAACGCTTAAATTTAATACATATTCATAT  796
      ||||||| ||||||||||||||||||||||||||| ||||||||| ||||
seq2  GTACCATCTGAATTCCTACTAAAACGCTTAAATTT-ATACATATTTATAT  798

seq1  ATGTATTTATTATAT-GTGTATATACATATATATATTTTCACACATATAT  845
      |||||||||| | || | | | | ||| | ||||||||||||||||||||
seq2  ATGTATTTATGAGATGGGGGAGAGACAGAGATATATTTTCACACATATAT  848

seq1  AGGTATATATATGTTTGT  863
      ||||||||||||||||||
seq2  AGGTATATATATGTTTGT  866