BAC Information

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BAC

Clone NameB6Ng01-132K04
Chromosome3 (Build37)X (Build37)
Map Location 123,722,405 - 123,722,72799,427,511 - 99,428,319
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMyoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
Downstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132K04.bB6Ng01-132K04.g
ACCDH933389DH933390
length1,007811
definitionDH933389|Mus musculus domesticus DNA, BAC clone: B6Ng01-132K04, 5' end.DH933390|Mus musculus domesticus DNA, BAC clone: B6Ng01-132K04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,722,405 - 123,722,727)(99,427,511 - 99,428,319)
sequence
gaattcagccaaaaatggtcaacatccttaatcatcagggaaatgcaaat
caaaacaaccctgagattccacctcacaccagtcagaatggctaagctca
aaaattcaggtgacagcagatgctggcgtggatgtggagaaagaggaaca
ctcctccattgttggtgggattgcaggcttgtacaaccactctggaaatc
agtctggcggttcctcagaaaattggacatagtactaccggaggatcccg
caatacctctcctgggcatatatacagaagatgttccaaccagtaagaag
gacatagaagccttatttataatagccataagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatctacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctaggcaga
tggatggacctggacggcatcatcctgagtgaggtaacccaatcacaaaa
gaactcacacaatatgtactcactgataagtggatattagcccagaaact
taggatatccaagatataagatacaatttgttaaatgcatgaaactcaag
aagaacgaagaccaaagtgtggacactttgccccttcttagaattggaaa
caaaacacccatgggaggaattacagagacaaagtttggagctgtgacaa
aaggatggaccatctagagactgccatatccagggatccatcccataatc
agcttccaaacgctgacaccattgcatacactagcaagattttgctgaaa
ggacccagatagagctgtctcttgtgaggctatgccggggcctagcaaac
acagaagtggaggctattggatggatcacagggcccccaatggaggagct
agagaaagtacccaagagctaaagggatctgcaatcctatagtggaacaa
caatatgaactaaccagtaccccctgagtcgtatctctagctgcatatga
atcagaa
gaattcattacacattctaggactccagtccattgtcaaataggtggttt
gcaaattctttttcaatggaaactttaaaaaattaagtatattgaaagag
ggcaaatgggacatatagggacaaatgcactatagggctgtactttagta
atgcctgcaggttaagtctatgagccacatgggggaaggggatggggtat
ctttccaagtttggatgatggatgataactttctttttgtggagctccta
tatacaattcttgccatgggaaggagtgcagcctagtttagctggtgtac
aatcccaccattactataatgtctagtactgatccagggttagggtcatg
ggttctgggttgcctgaagtgatgctatgccattacatgctggccttgct
agcctgacttgatccgcatagtgatttccagagtagtgtaggggtttgta
gacagacagatggactcaccattcctgccattaggcctttgagatggtgg
gtaaaggcagttgtcaccaggcctcagagcttgagtttgggccttgggtt
acacacaatggatgagagcaagaaaggacccagactccgtgcaagtcatc
tcctgactgccttgttctcttcacatgggctttcatagagcaaattgttt
gactattggcaagatcttttactaattttccttttatgaattgtattttt
agtataagtctaaggattcttcacctacccttagattttgctttttgatt
ttttttctcctccccctcttttctctgtgtatatgtgtgtatatgtgtat
gtgtgtgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_123722405_123722727
seq2: B6Ng01-132K04.b_750_1057 (reverse)

seq1  TTCTGATACATATGCAGCTAGAGACACGAGCTCTGGGGGGTACTGGTTAG  50
      ||||||| |||||||||||||||| |||| |||  |||||||||||||||
seq2  TTCTGATTCATATGCAGCTAGAGATACGA-CTC-AGGGGGTACTGGTTAG  48

seq1  TTCATATTGTTGTTCCATCTATAGGGTTGCAGACCCCTTTAGCTCCTTGG  100
      ||||||||||||||||| ||||||| ||||||| |||||||||| |||||
seq2  TTCATATTGTTGTTCCA-CTATAGGATTGCAGATCCCTTTAGCT-CTTGG  96

seq1  GTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||    
seq2  GTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAAT----  142

seq1  GACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGCCTCACA  200
             ||| |||||||||||||||||||||||||||||||||||||||
seq2  -------AGCCTCCACTTCTGTGTTTGCTAGGCCCCGGCATAGCCTCACA  185

seq1  AGAGATAGCTATATCTGGGTCCTTTCAGCAAAATCTTGCTGGCGTATGCA  250
      ||||| |||| ||||||||||||||||||||||||||||| | |||||||
seq2  AGAGACAGCTCTATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCA  235

seq1  ATGGTGTCAGTGTTTGGAGGCTAATTATGGGATGGATTCCTGGGTATGGC  300
      |||||||||| ||||||| ||| |||||||||||||| ||||| ||||||
seq2  ATGGTGTCAGCGTTTGGAAGCTGATTATGGGATGGATCCCTGGATATGGC  285

seq1  AGTCTCTAGATGGTCCATCCTTT  323
      |||||||||||||||||||||||
seq2  AGTCTCTAGATGGTCCATCCTTT  308

seq1: chrX_99427511_99428319
seq2: B6Ng01-132K04.g_68_878

seq1  GAATTCATTACACATTCTAGGACTCCAGTCCATTGTCAAATAGGTGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACACATTCTAGGACTCCAGTCCATTGTCAAATAGGTGGTTT  50

seq1  GCAAATTCTTTTTCAATGGAAACTTTAAAAAATTAAGTATATTGAAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTCTTTTTCAATGGAAACTTTAAAAAATTAAGTATATTGAAAGAG  100

seq1  GGCAAATGGGACATATAGGGACAAATGCACTATAGGGCTGTACTTTAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATGGGACATATAGGGACAAATGCACTATAGGGCTGTACTTTAGTA  150

seq1  ATGCCTGCAGGTTAAGTCTATGAGCCACATGGGGGAAGGGGATGGGGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGCAGGTTAAGTCTATGAGCCACATGGGGGAAGGGGATGGGGTAT  200

seq1  CTTTCCAAGTTTGGATGATGGATGATAACTTTCTTTTTGTGGAGCTCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAGTTTGGATGATGGATGATAACTTTCTTTTTGTGGAGCTCCTA  250

seq1  TATACAATTCTTGCCATGGGAAGGAGTGCAGCCTAGTTTAGCTGGTGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAATTCTTGCCATGGGAAGGAGTGCAGCCTAGTTTAGCTGGTGTAC  300

seq1  AATCCCACCATTACTATAATGTCTAGTACTGATCCAGGGTTAGGGTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCACCATTACTATAATGTCTAGTACTGATCCAGGGTTAGGGTCATG  350

seq1  GGTTCTGGGTTGCCTGAAGTGATGCTATGCCATTACATGCTGGCCTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGGGTTGCCTGAAGTGATGCTATGCCATTACATGCTGGCCTTGCT  400

seq1  AGCCTGACTTGATCCGCATAGTGATTTCCAGAGTAGTGTAGGGGTTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGACTTGATCCGCATAGTGATTTCCAGAGTAGTGTAGGGGTTTGTA  450

seq1  GACAGACAGATGGACTCACCATTCCTGCCATTAGGCCTTTGAGATGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGATGGACTCACCATTCCTGCCATTAGGCCTTTGAGATGGTGG  500

seq1  GTAAAGGCAGTTGTCACCAGGCCTCAGAGCTTGAGTTTGGGCCTTGGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGCAGTTGTCACCAGGCCTCAGAGCTTGAGTTTGGGCCTTGGGTT  550

seq1  ACACACAATGGATGAGAGCAAGAAAGGACCCAGACTCCGTGCAAGTCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAATGGATGAGAGCAAGAAAGGACCCAGACTCCGTGCAAGTCATC  600

seq1  TCCTGACTGCCTTGTTCTCTTCACATGGGCTTTCATAGAGCAAATTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACTGCCTTGTTCTCTTCACATGGGCTTTCATAGAGCAAATTGTTT  650

seq1  GACTATTGGCAAGATCTTTTACTAATTTTCCTTTTATGAATTGTATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTGGCAAGATCTTTTACTAATTTTCCTTTTATGAATTGTATTTTT  700

seq1  AGTATAAGTCTAAGGATTCTTCACCTACCCTTAGATTTTGCTTTTTGA-T  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTATAAGTCTAAGGATTCTTCACCTACCCTTAGATTTTGCTTTTTGATT  750

seq1  TTTTTTCTCCTCCCCCTC-TTTCTCTGTGTATATGTGTGTATATGTGTAT  798
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTTTTCTCCTCCCCCTCTTTTCTCTGTGTATATGTGTGTATATGTGTAT  800

seq1  GTGTGTGTGTA  809
      |||||||||||
seq2  GTGTGTGTGTA  811