BAC Information

Click to search

BAC

Clone NameB6Ng01-132M08
ChromosomeX (Build37)
Map Location 71,031,554 - 71,178,767
singlet/doubletdoublet
Overlap geneIdh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp
Upstream geneGabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3
Downstream geneHcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132M08.bB6Ng01-132M08.g
ACCDH933489DH933490
length1,1511,152
definitionDH933489|Mus musculus domesticus DNA, BAC clone: B6Ng01-132M08, 5' end.DH933490|Mus musculus domesticus DNA, BAC clone: B6Ng01-132M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,031,554 - 71,032,708)(71,177,604 - 71,178,767)
sequence
gaattcaaggccagcctggtctacagtgtgagttccaggctacagagaga
aaccgcgtgttcgacgagacagagagaaaccgggagagggaacgcgggga
cacagcgagagacacacagcgagagagatactgataaagtctgattttcc
acctccactagggcaaagcagtctaagagagggaaaaccaaggaggaact
gagtccagaaacaggcttagatggtacatgcaaggtgggccaggacacgt
ggcctcttcaaaagggcttccacaaggacactacggaggggacacctagc
tactgcggtctaccttcccaacccttccggaggaaggcacagaggagcca
gatcagagtcaatttcggccaaccgcctcacggacagcagaagcaaccag
tgaaccccagagtgcagccctctccccgcccctcctatggctcgcacagc
caatcgaattccgtgtttgctcaaagagccgttacccgactccgggtctc
aattgggtgttaagtccctctgtaagcctgcaaatgtcccaccgcccatt
caccactcacctcccaaggacggcagaggagagttggcttgagcattgcc
tttgcagcaccgccagcagctatcgccaccttcagcgccatgacgaaaag
tgaggacctctacaggtcaaaacattaagcaccgttctcgcgacagttgg
ggacagcgagaaatccggggtatgggttgagaaaacgctagcattacgca
cgcgcacagtcacaccggttcttacgcccccttccggtgcctagagcact
gttccgccatcttggggaggggaaagctgagaaggagggaagtgcgaccg
gttgggaccctggctagggaagcggacacgtcagtgccgccagcgacgtc
accatgcccgacccagcccgccgacgcacgattgggtgctgaggccgctt
acgcgtcgcgcttcctcgtctgctcgcatgtccagggtggcttgctctct
tttccctcggaagagaagaggcgatggcggcgatggcatctttcgcgcct
ggcactactcctgctgtctggcctatcctgctgctcagtagcgactggac
ggagcctgtttcggggccgccccctgctgttgcagaggtggggctggggg
a
gaattccaaacatccacaatcacagaaattatctgcagctggcagagcca
tgcctctgtggcagcatggggcaaaatcatggtgagctgctacaaacaag
tctacagcagccccatatccctatacctgggattaaaacaaaagcacatt
cttataatagtcatgtggttttaaagtaaattccagaattctcactaaaa
gcttgccacaggcccaggaagaggagcaatacactgtccttcagatagga
ggtttgagaacaatgtccagggataggaggacatgggtcagcagaggtaa
gttgtcctgtgcagatttgctaagacatgtggacatttagcctgggagaa
atgcaagggttctttttcccaccctactcctgtagctgttacctatggag
ctacccttcttccctgtgctcaccttctcatcccactctggaaggcaggc
aatatagagggctagaaggatgggcaagtaaagagtatactgctcttgca
aaggaccagagttcagtcctcaagcttcttcattgagcagctccaggagg
attcaatgcctctggcctccatggacaacccacccacacagacacatgcg
tacatgcatataattaatataattaaaaatattttaaaggaatatatcag
aagtgctttggtgcagcttgaagctggatgtgatgcaacacacttgtagt
cccagccctgagaggtgaacgcaaaggagcaggagttcaaaaccattctt
ggttaatagagttcaaggtatcctgtgatacatgagaccctattgcaaac
aaactagcaaactgagctcctggggagaaaggcatcatagctttgcatca
ccctattcccatgagactcaggccagggaaccacccattctatcatacca
atgctcttaacttggctgagcttgaaagggatgatatgtgtgtaagagaa
gctgggagacatgagatggataaatacagcttaaataacagcatgcagct
ttctggatacaggagccaaggtccttggcatgactagctaaggttaagat
gaacagagcagctcagcagatactaacggacctggagaatcaggcttatt
ctaaccacataaaggatagagtgttcaggatgaaaagacattctcaaacc
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_71031554_71032708
seq2: B6Ng01-132M08.b_50_1199

seq1  GAATTCAAGGCCAGCCTGGTCTACAGTGTGAGTTCCAGGCTACAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTGGTCTACAGTGTGAGTTCCAGGCTACAGAGAGA  50

seq1  AACCGCGTGTTCGACGAGACAGAGAGAAACCGGGAGAGGGAACGCGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGCGTGTTCGACGAGACAGAGAGAAACCGGGAGAGGGAACGCGGGGA  100

seq1  CACAGCGAGAGACACACAGCGAGAGAGATACTGATAAAGTCTGATTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCGAGAGACACACAGCGAGAGAGATACTGATAAAGTCTGATTTTCC  150

seq1  ACCTCCACTAGGGCAAAGCAGTCTAAGAGAGGGAAAACCAAGGAGGAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCACTAGGGCAAAGCAGTCTAAGAGAGGGAAAACCAAGGAGGAACT  200

seq1  GAGTCCAGAAACAGGCTTAGATGGTACATGCAAGGTGGGCCAGGACACGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAGAAACAGGCTTAGATGGTACATGCAAGGTGGGCCAGGACACGT  250

seq1  GGCCTCTTCAAAAGGGCTTCCACAAGGACACTACGGAGGGGACACCTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTTCAAAAGGGCTTCCACAAGGACACTACGGAGGGGACACCTAGC  300

seq1  TACTGCGGTCTACCTTCCCAACCCTTCCGGAGGAAGGCACAGAGGAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCGGTCTACCTTCCCAACCCTTCCGGAGGAAGGCACAGAGGAGCCA  350

seq1  GATCAGAGTCAATTTCGGCCAACCGCCTCACGGACAGCAGAAGCAACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAGTCAATTTCGGCCAACCGCCTCACGGACAGCAGAAGCAACCAG  400

seq1  TGAACCCCAGAGTGCAGCCCTCTCCCCGCCCCTCCTATGGCTCGCACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCCAGAGTGCAGCCCTCTCCCCGCCCCTCCTATGGCTCGCACAGC  450

seq1  CAATCGAATTCCGTGTTTGCTCAAAGAGCCGTTACCCGACTCCGGGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCGAATTCCGTGTTTGCTCAAAGAGCCGTTACCCGACTCCGGGTCTC  500

seq1  AATTGGGTGTTAAGTCCCTCTGTAAGCCTGCAAATGTCCCACCGCCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGTGTTAAGTCCCTCTGTAAGCCTGCAAATGTCCCACCGCCCATT  550

seq1  CACCACTCACCTCCCAAGGACGGCAGAGGAGAGTTGGCTTGAGCATTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTCACCTCCCAAGGACGGCAGAGGAGAGTTGGCTTGAGCATTGCC  600

seq1  TTTGCAGCACCGCCAGCAGCTATCGCCACCTTCAGCGCCATGACGAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGCACCGCCAGCAGCTATCGCCACCTTCAGCGCCATGACGAAAAG  650

seq1  TGAGGACCTCTACAGGTCAAAACATTAAGCACCGTTCTCGCGACAGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACCTCTACAGGTCAAAACATTAAGCACCGTTCTCGCGACAGTTGG  700

seq1  GGACAGCGAGAAATCCGGGGTATGGGTTGAGAAAACGCTAGCATTACGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCGAGAAATCCGGGGTATGGGTTGAGAAAACGCTAGCATTACGCA  750

seq1  CGCGCACAGTCACACCGGTTCTTACGCCCCCTTCCGGTGCCTAGAGCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCACAGTCACACCGGTTCTTACGCCCCCTTCCGGTGCCTAGAGCACT  800

seq1  GTTCCGCCATCTTGGGGAGGGGAAGGCTGAGAAGGAGGGAAGTGCGACCG  850
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTTCCGCCATCTTGGGGAGGGGAAAGCTGAGAAGGAGGGAAGTGCGACCG  850

seq1  GTTGGGACCCTGGCTAGGGAAGCGGACACGTCAGTGCCGCCAGCGACGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGACCCTGGCTAGGGAAGCGGACACGTCAGTGCCGCCAGCGACGTC  900

seq1  ACCATGCCCGACCCAGCCCGCCGACGCACGATTGGGTGCTGAGGCCGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCCCGACCCAGCCCGCCGACGCACGATTGGGTGCTGAGGCCGCTT  950

seq1  ACGCGTCGCGCTTCCTCGTCTGCTCCGCATGTCCAGGGTGGCTTGCTCTC  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACGCGTCGCGCTTCCTCGTCTGCT-CGCATGTCCAGGGTGGCTTGCTCTC  999

seq1  TTTTCCCCTCGGAAGAGAAGAGGCGATGGCGGCGATGGCATCTTTCGGCG  1050
      |||| ||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTT-CCCTCGGAAGAGAAGAGGCGATGGCGGCGATGGCATCTTTC-GCG  1047

seq1  CCCTGGCACTACTCCTGCTGTCTGGCCTATCTTGCTGCTCAGGTAGCGGC  1100
       |||||||||||||||||||||||||||||| ||||||||| ||||| | 
seq2  -CCTGGCACTACTCCTGCTGTCTGGCCTATCCTGCTGCTCA-GTAGC-GA  1094

seq1  CTGGCCGGAGCTTGTTTCGGGGCGCGCCCCTGCTGTTG-GCAGGTGGTGC  1149
      |||| |||||| |||||||||||   ||||||||||||   |||||| ||
seq2  CTGGACGGAGCCTGTTTCGGGGCCGCCCCCTGCTGTTGCAGAGGTGGGGC  1144

seq1  TGGGGG  1155
      ||||||
seq2  TGGGGG  1150

seq1: chrX_71177604_71178767
seq2: B6Ng01-132M08.g_69_1220 (reverse)

seq1  CAGGTTGTAGAATGGCTCTTTCATCCTGAAACACTTCAT-CTTTATGGTG  49
      ||||||  |||||| || |||||||||| ||||||  || |||||| |||
seq2  CAGGTTTGAGAATGTCT-TTTCATCCTG-AACACTCTATCCTTTAT-GTG  47

seq1  TTTAGGAATAAGCCTGA-TCTCAGTGTCTGTTAAGTATCTGCTGAAGCTG  98
       ||| |||||||||||| ||||   ||| ||| ||||||||||| |||||
seq2  GTTA-GAATAAGCCTGATTCTCCAGGTCCGTT-AGTATCTGCTG-AGCTG  94

seq1  CTCTGTTCATCTTTACCCTTAGCCTAGGTCATGCCCAGGGACCTTGGCT-  147
      ||||||||||| ||| |||||| ||| |||||| ||| ||||||||||| 
seq2  CTCTGTTCATC-TTAACCTTAG-CTA-GTCATG-CCAAGGACCTTGGCTC  140

seq1  CTGTATCCAGGAAAGCTTGCATGCTGTTATTTAAGCTGTATTTATCCATC  197
      ||||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  CTGTATCCA-GAAAGC-TGCATGCTGTTATTTAAGCTGTATTTATCCATC  188

seq1  TTCATTGTCTCCCAGCTTCTCTTACACACATATCATCCCTTTCAAGCTCA  247
       ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  -TCA-TGTCTCCCAGCTTCTCTTACACACATATCATCCCTTTCAAGCTCA  236

seq1  GCCAAGTTAAGAGCATTGGTATGATAGAATGGGTGGTTCCCTGGCCCTGA  297
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCCAAGTTAAGAGCATTGGTATGATAGAATGGGTGGTTCCCTGG-CCTGA  285

seq1  GTCTCATGGGAATAGGGTGATGCAAAGCTATGATGCCTTTCTCCCCAGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATGGGAATAGGGTGATGCAAAGCTATGATGCCTTTCTCCCCAGGA  335

seq1  GCTCAGTTTGCTAGTTTGTTTGCAATAGGGTCTCATGTATCACAGGATAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTTTGCTAGTTTGTTTGCAATAGGGTCTCATGTATCACAGGATAC  385

seq1  CTTGAACTCTATTAACCAAGAATGGTTTTGAACTCCTGCTCCTTTGCGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCTATTAACCAAGAATGGTTTTGAACTCCTGCTCCTTTGCGTT  435

seq1  CACCTCTCAGGGCTGGGACTACAAGTGTGTTGCATCACATCCAGCTTCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTCAGGGCTGGGACTACAAGTGTGTTGCATCACATCCAGCTTCAA  485

seq1  GCTGCACCAAAGCACTTCTGATATATTCCTTTAAAATATTTTTAATTATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACCAAAGCACTTCTGATATATTCCTTTAAAATATTTTTAATTATA  535

seq1  TTAATTATATGCATGTACGCATGTGTCTGTGTGGGTGGGTTGTCCATGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATATGCATGTACGCATGTGTCTGTGTGGGTGGGTTGTCCATGGA  585

seq1  GGCCAGAGGCATTGAATCCTCCTGGAGCTGCTCAATGAAGAAGCTTGAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGGCATTGAATCCTCCTGGAGCTGCTCAATGAAGAAGCTTGAGG  635

seq1  ACTGAACTCTGGTCCTTTGCAAGAGCAGTATACTCTTTACTTGCCCATCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACTCTGGTCCTTTGCAAGAGCAGTATACTCTTTACTTGCCCATCC  685

seq1  TTCTAGCCCTCTATATTGCCTGCCTTCCAGAGTGGGATGAGAAGGTGAGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCCCTCTATATTGCCTGCCTTCCAGAGTGGGATGAGAAGGTGAGC  735

seq1  ACAGGGAAGAAGGGTAGCTCCATAGGTAACAGCTACAGGAGTAGGGTGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAAGAAGGGTAGCTCCATAGGTAACAGCTACAGGAGTAGGGTGGG  785

seq1  AAAAAGAACCCTTGCATTTCTCCCAGGCTAAATGTCCACATGTCTTAGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAACCCTTGCATTTCTCCCAGGCTAAATGTCCACATGTCTTAGCA  835

seq1  AATCTGCACAGGACAACTTACCTCTGCTGACCCATGTCCTCCTATCCCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCACAGGACAACTTACCTCTGCTGACCCATGTCCTCCTATCCCTG  885

seq1  GACATTGTTCTCAAACCTCCTATCTGAAGGACAGTGTATTGCTCCTCTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGTTCTCAAACCTCCTATCTGAAGGACAGTGTATTGCTCCTCTTC  935

seq1  CTGGGCCTGTGGCAAGCTTTTAGTGAGAATTCTGGAATTTACTTTAAAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTGTGGCAAGCTTTTAGTGAGAATTCTGGAATTTACTTTAAAAC  985

seq1  CACATGACTATTATAAGAATGTGCTTTTGTTTTAATCCCAGGTATAGGGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGACTATTATAAGAATGTGCTTTTGTTTTAATCCCAGGTATAGGGA  1035

seq1  TATGGGGCTGCTGTAGACTTGTTTGTAGCAGCTCACCATGATTTTGCCCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGCTGCTGTAGACTTGTTTGTAGCAGCTCACCATGATTTTGCCCC  1085

seq1  ATGCTGCCACAGAGGCATGGCTCTGCCAGCTGCAGATAATTTCTGTGATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCCACAGAGGCATGGCTCTGCCAGCTGCAGATAATTTCTGTGATT  1135

seq1  GTGGATGTTTGGAATTC  1164
      |||||||||||||||||
seq2  GTGGATGTTTGGAATTC  1152