BAC Information

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BAC

Clone NameB6Ng01-132M13
ChromosomeX (Build37)
Map Location 90,018,965 - 90,020,100
singlet/doubletsinglet
Overlap genenone
Upstream geneMageb5, LOC673766, LOC633484, LOC674396, EG278087, Mageb1, EG236892, EG236893, Mageb18, EG436259, EG668061, EG546347, LOC629568
Downstream geneLOC100042663, Rp23-438h3.2, Arx, Pola1, EG629581, Pcyt1b, Pdk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132M13.bB6Ng01-132M13.g
ACCDH933499DH933500
length1,1181,125
definitionDH933499|Mus musculus domesticus DNA, BAC clone: B6Ng01-132M13, 5' end.DH933500|Mus musculus domesticus DNA, BAC clone: B6Ng01-132M13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaacttttatcatgaatgggtgttggatcttgt
caaatgcgttttctgcatctaacgagatgatcatgtggtttttgtctttg
agtttgtttatataatggattacattgatggattttcatatattaaacca
tccctgcatccctggaataaaacctacttggtcaggatggatgattgctt
taatgtgttcttggattcggttagcgagaattttattgaggatttttgca
tcaatattcataagagaaattggtctgaagttctctatctttgttggatc
tttctgtggtttaggtatcaaagtaatagtggcttcataaaatgagttgg
gtagagtaccttctacttctatcttgtgaaatagtttgtgcagaactgga
attagatcttctttgaaggtctgatagaactctgcactaaacccgtctgg
tcctgggctttttttttggcttggagactattaataactgcttctatttc
tttaggtgatatgggactgtttagatggtcaacttgatcctgattcaact
ttggtacctggtatctgtccagaagtttgtccatttcgtccaggttttcc
agttttgttgagtatagccttttgtagaaggatctgatggtgttttggat
ttcttcaggatctgttgttatgtctcccttttcatttctgattttgttga
ttaggattttttcccttttgcctttttagtgagtctagcttagggtttat
ctatcgtgttgaatttctcaaagaaccaactcctcggttggttattcctt
gcatagttcttcttggttcacttgggaaatacacccctgagtttgattat
ttcctgccgtctactcctcatgggtgaatttgcttctttttttctagagc
atttagatgtgttatcagctgctagtttgtgcttttcccgtatcttttgg
aggaactcagagctatgagtttccctctaaaaatgcctccattgtgccct
aaggtttggatacgttgtggcctccatttcaataaaactctaaaatgctt
tgttacattcgtattcccttcctggaccagattattgggaagatgatgag
tctatcttccactgtaag
gaattctttgcctgcagaacatagggaaggaaataatttctttctcaaat
accaagtagatatattttctatatttcttctatatctacagaggaaggta
tttgaaccaaaacaatgtcgaaacagtttcatttcttaaactgacaatat
tctcacaactatcttaaactgaacatacacttacaacaataattccatga
taaaggatatttaagctgtcttgggtaataaaaagtctcctgaaggaatt
ctaaataattagaaaaattagtgcatttggccttattttgaattatttat
attatattatgacccaaatatacactgtgatatttcaaaaatattacctg
cacacaacatgaattttcataaatataaatgtgattaccctaaagatatg
actgcaaaggcagaacagaaaatataaaactcattttatcatttcgtttt
ccataacaaaataaatattattttactattcctggcaggcattaagccct
aataaatgcaaagtggaaaaattaccaaaggactcaaccttgagacacag
aaaaatgaatctaaaatagatttcagaattaaaacattcattaagttaaa
tttacaaaaaactgtgtcagtgttatagggatttatctcaaacaaaggcc
tagagatgaagtacgtaaattagataatgcaaatagctcttggccttagc
accatcttccttgaacctcctgcaccatcagagtcaaaggcaggaagaag
tgaatgtgcagactgaagtgcaagagaaaaaagatggggcagaggtccaa
gtaaattagcctgtgtacccatgaaagctggaggagcagaggtcaggggt
gctgaaggctgggacactggtacaagttgtggggactgtatgctactatt
agcataagtctcagtaaatctgggacatcaccatctgcttgctgagacac
tcaagagactgaggcttccttataccaaacagtcctgctggcccactgtt
cagacttatggcattctggactagtttgttctcacttgtgaccagcataa
cttatgtacaatagtcatctttctttctatctcagctgaaaaaaaaataa
ttcagatagagctctagattaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_90018965_90020100
seq2: B6Ng01-132M13.g_69_1193

seq1  GAATTCTTTGCCTGCAGAACATAGGGAAGGAAATAATTTCTTTCTCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCCTGCAGAACATAGGGAAGGAAATAATTTCTTTCTCAAAT  50

seq1  ACCAAGTAGATATATTTTCTATATTTCTTCTATATCTACAGAGGAAGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTAGATATATTTTCTATATTTCTTCTATATCTACAGAGGAAGGTA  100

seq1  TTTGAACCAAAACAATGTCGAAACAGTTTCATTTCTTAAACTGACAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACCAAAACAATGTCGAAACAGTTTCATTTCTTAAACTGACAATAT  150

seq1  TCTCACAACTATCTTAAACTGAACATACACTTACAACAATAATTCCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAACTATCTTAAACTGAACATACACTTACAACAATAATTCCATGA  200

seq1  TAAAGGATATTTAAGCTGTCTTGGGTAATAAAAAGTCTCCTGAAGGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGATATTTAAGCTGTCTTGGGTAATAAAAAGTCTCCTGAAGGAATT  250

seq1  CTAAATAATTAGAAAAATTAGTGCATTTGGCCTTATTTTGAATTATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAATTAGAAAAATTAGTGCATTTGGCCTTATTTTGAATTATTTAT  300

seq1  ATTATATTATGACCCAAATATACACTGTGATATTTCAAAAATATTACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTATGACCCAAATATACACTGTGATATTTCAAAAATATTACCTG  350

seq1  CACACAACATGAATTTTCATAAATATAAATGTGATTACCCTAAAGATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAACATGAATTTTCATAAATATAAATGTGATTACCCTAAAGATATG  400

seq1  ACTGCAAAGGCAGAACAGAAAATATAAAACTCATTTTATCATTTCGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAAGGCAGAACAGAAAATATAAAACTCATTTTATCATTTCGTTTT  450

seq1  CCATAACAAAATAAATATTATTTTACTATTCCTGGCAGGCATTAAGCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACAAAATAAATATTATTTTACTATTCCTGGCAGGCATTAAGCCCT  500

seq1  AATAAATGCAAAGTGGAAAAATTACCAAAGGACTCAACCTTGAGACACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGCAAAGTGGAAAAATTACCAAAGGACTCAACCTTGAGACACAG  550

seq1  AAAAATGAATCTAAAATAGATTTCAGAATTAAAACATTCATTAAGTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAATCTAAAATAGATTTCAGAATTAAAACATTCATTAAGTTAAA  600

seq1  TTTACAAAAAACTGTGTCAGTGTTATAGGGATTTATCTCAAACAAAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAAAAACTGTGTCAGTGTTATAGGGATTTATCTCAAACAAAGGCC  650

seq1  TAGAGATGAAGTACGTAAATTAGATAATGCAAATAGCTCTTGGCCTTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGAAGTACGTAAATTAGATAATGCAAATAGCTCTTGGCCTTAGC  700

seq1  ACCATCTTCCTTGAACCTCCTGCACCATCAGAGTCAAAGGCAGGAAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTCCTTGAACCTCCTGCACCATCAGAGTCAAAGGCAGGAAGAAG  750

seq1  TGAATGTGCAGACTGAAGTGCAAGAGAAAAAAGATGGGGCAGAGGTCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTGCAGACTGAAGTGCAAGAGAAAAAAGATGGGGCAGAGGTCCAA  800

seq1  GTAAATTAGCCTGTGTACCCATGAAAGCTGGAGGAGCAGAGGTCAGGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTAGCCTGTGTACCCATGAAAGCTGGAGGAGCAGAGGTCAGGGGT  850

seq1  GCTGAAGGCTGGGACACTGGTACAAGTTGT-GGGACTGTATGCTACTATT  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCTGAAGGCTGGGACACTGGTACAAGTTGTGGGGACTGTATGCTACTATT  900

seq1  AGCAGTAAGTCTCAGTAAATCTGGGACATCACCATCTGCTTGCTGAGACC  949
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGCA-TAAGTCTCAGTAAATCTGGGACATCACCATCTGCTTGCTGAGA-C  948

seq1  ACTCAAGAGACTGAAGGCCTTCCTTATAACCAAAACAGTCCTGCTGGCCC  999
      ||||||||||||||  | ||||||||||  | ||||||||||||||||||
seq2  ACTCAAGAGACTGA--GGCTTCCTTATA--CCAAACAGTCCTGCTGGCCC  994

seq1  ACTGTTCCAGACTTATGGCATTCTGGACTAGTTTTGTTCTCACTTGTGAC  1049
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTGTT-CAGACTTATGGCATTCTGGACTAG-TTTGTTCTCACTTGTGAC  1042

seq1  CAAGCATAACTTATGTACAATAAGTCATCTTTCTTTCTATCTCAGCTGAA  1099
      | ||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  C-AGCATAACTTATGTACAAT-AGTCATCTTTCTTTCTATCTCAGCTG-A  1089

seq1  AAAAAAAATAATTCAAGTAGAGCTCAAGATTTAATTT  1136
      |||||||||||||||  |||||||| ||| |||||||
seq2  AAAAAAAATAATTCAGATAGAGCTCTAGA-TTAATTT  1125