MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-133B06
Chromosome	X (Build37)
Map Location	116,142,356 - 116,143,331
singlet/doublet	singlet
Overlap gene	none
Upstream gene	ENSMUSG00000072994, LOC100039551, Tgifx1, LOC665087
Downstream gene	LOC385417, Pabpc5, LOC236983, LOC674318
Link	Open Mouse BAC browser

Click to get alignment info.

name	ENSMUSG00000072994 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100038680 MGI:3642203
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 7 ESTs, 1 Protein

name	LOC100039551 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039551
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 7 ESTs, 6 Proteins

name	Tgifx1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245583 MGI:2387796
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665087 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665087
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 Proteins pseudo : _no_value

name	LOC385417 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:385417
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Pabpc5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:93728 MGI:2136401
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC236983 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:236983
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 17 Proteins pseudo : _no_value

name	LOC674318 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:674318
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	ENSMUSG00000072994 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149272155 GeneID:100038680 MGI:3642203
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 7 ESTs, 1 Protein product : predicted gene, ENSMUSG00000072994 transcript_id : XM_001472879.1

name	LOC100039551 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149272158 GeneID:100039551
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 7 ESTs, 6 Proteins product : similar to testis-expressed homeobox protein Tex1 transcript_id : XM_001472895.1

name	Tgifx1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23346540 GeneID:245583 MGI:2387796
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TGIF homeobox 1 transcript_id : NM_153109.1

name	Pabpc5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370786 GeneID:93728 MGI:2136401
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : poly A binding protein, cytoplasmic 5 transcript_id : NM_053114.2

name	ENSMUSG00000072994 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149272156 GeneID:100038680 MGI:3642203
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472929.1

name	LOC100039551 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149272159 GeneID:100039551
definition	codon_start : 1 product : similar to testis-expressed homeobox protein Tex1 protein_id : XP_001472945.1

name	Tgifx1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23346541 CCDS:CCDS30368.1 GeneID:245583 MGI:2387796
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA] GO_process : GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : TGF beta-induced transcription factor 2-like protein; testis expressed homeobox Tex1 product : TGIF homeobox 1 protein_id : NP_694749.1

name	Pabpc5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29336045 CCDS:CCDS30369.1 GeneID:93728 MGI:2136401
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : poly A binding protein cytoplasmic 5 product : poly A binding protein, cytoplasmic 5 protein_id : NP_444344.1

name	LOC665087 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665087
definition	number : 2 pseudo : _no_value

name	LOC665087 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665087
definition	number : 1 pseudo : _no_value

name	LOC385417 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:385417
definition	number : 1 pseudo : _no_value

name	LOC385417 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:385417
definition	number : 2 pseudo : _no_value

name	LOC385417 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:385417
definition	number : 3 pseudo : _no_value

name	LOC236983 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:236983
definition	number : 1 pseudo : _no_value

name	LOC674318 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:674318
definition	number : 1 pseudo : _no_value

clone name	MSMg01-338D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-216H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159H08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-161F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-050D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158E19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-367M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-208J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-210E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-161A01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321M02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029O15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172O09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-211N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065L05
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-133B06.b	B6Ng01-133B06.g
ACC	DH933725	DH933726
length	1,255	958
definition	DH933725\|Mus musculus domesticus DNA, BAC clone: B6Ng01-133B06, 5' end.	DH933726\|Mus musculus domesticus DNA, BAC clone: B6Ng01-133B06, 3' end.
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa atcagggactagacaaggctgcccactttctccctaccttttcaacatag tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag tcaatggcctttatctatacaaagaataaacaggctgagaaagaaattag ggaaacaacacctttctcaatagtcacaaataatataaaatatcttggcg tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatct ctgaagaaagaaattaaggaaattctcagaagatggaaagatctcccatg ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc aacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacc taggatagcaaaaagtcttctcaaggataaaagtacctctggtggaatca ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga tccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag ctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctgg cacaactggttgttatcatgtagagatgcgatcgatccatacttatctcc ttgtactagtcaaatctaagtggatcagacttcacataaaccagagaaac tgaaacttatagagaaaagtggggaaagcttgagattgggtacagggaaa tctgaacgaacagcaatgcttgtgcttaggatcgagaattgacaatggac taatgactcagtctggcagcagaaccgtctatgacaaagaacctccgaac acagtattggagatctttcctattcctatacgatagggcactaattctac cacag	gaattctgcctgtacctgtctcctgggattaaaggtatttgtgttccacc tcaatcacacagatctagatggtctttggttgtgatccattgccagagaa agcatgctgcttgatcaaaattcctctacaatttctcatgggaaaagcca cagagaggaaaaagcctactcatggacaaaattgggggaaaaatattaaa gaattttagaggacccaagagcctttctaattcagtgattagcacttttc catcctgagaggacatgctacattgatctttacaccatctagtcttatgt catttacagacagatgtttctttacctgtcccaaggagtgagttcatcta acataagcattcttgctacaatatcaaattaaatgaataaatgttttgaa attcattgagatgtatagaattccagtttagtcaattttggtgtgtgatt atatttttataacagtgtttattcaaaatatgaaaaattaaaactacatt catgctaacagctatgaaaatgtcttttgatgaaactcaacatgccttca gtataatatatatatatatatatatatatatatatatatatatatatata tataaatctatctaattacagagaaatagctatatacaagaatatatata tatatatatctcactgcaacatcatgatcaataaaggacaactttaagct tttttccctatgaataatgttagtttgtacaaacaaaaggagattattgt cacctttgttactcggcatattatttaatttcttcctagaaaattggata atagacacttaaaacaatgtaacccatgcaaaaagaaaaaaagacatctt tgtattagatgatgtatcagatttgccgaacttctggggtatcctaaatc taaatgaatcacgaatcacaaatcatggaataaaagtgttttataaactg tggacata
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Alignment Information

BAC End 1

BAC End 2

seq1: chrX_116142356_116143331
seq2: B6Ng01-133B06.g_68_1025 (reverse)

seq1  TATGTTCCACAGTTTTATAAAAACACATTTTATTCCATGATTTTGTGATT  50
      |||| ||||||| ||||| ||||||| ||||||||||||| |||||||||
seq2  TATG-TCCACAG-TTTAT-AAAACAC-TTTTATTCCATGA-TTTGTGATT  45

seq1  ACGTGATTTATTTATGATTTTATTGATACCACAGAAGTTCGGCAAATCTG  100
       ||||||| ||||| |||||    |||||| |||||||||||||||||||
seq2  -CGTGATTCATTTA-GATTT--AGGATACCCCAGAAGTTCGGCAAATCTG  91

seq1  ATAACATCATCTAATAACAAAGATGACTTTTCTTCTTTTTGCATGGTTTA  150
      || |||||||||||| ||||||||| ||||| |||||||||||||| |||
seq2  AT-ACATCATCTAAT-ACAAAGATGTCTTTTTTTCTTTTTGCATGGGTTA  139

seq1  CATTTGTTTTATGTGTCTATTATCCAATTTCTCTAGGTAGAAATTAAAAT  200
      || |||||||| |||||||||||||||||| |||||| ||||||| ||||
seq2  CA-TTGTTTTAAGTGTCTATTATCCAATTT-TCTAGGAAGAAATT-AAAT  186

seq1  ACTATGCCGAGTAACAAAGGTGACAATAATCTCCTTTTGTTTGTACAAAC  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCCGAGTAACAAAGGTGACAATAATCTCCTTTTGTTTGTACAAAC  236

seq1  TAACATTATTCATTAGGGAAAAAGCTTAAAGTTGTCCTTTATTGATCATG  300
      |||||||||||||  || ||||||||||||||||||||||||||||||||
seq2  TAACATTATTCATAGGGAAAAAAGCTTAAAGTTGTCCTTTATTGATCATG  286

seq1  ATGTTGCTGTGAGATTTCTATGTATAATCTTTCTTGTATTATGCTTATTC  350
      ||||||| ||||||| | ||| ||||    |||||||||   |||  |||
seq2  ATGTTGCAGTGAGATATATATATATATATATTCTTGTATATAGCTATTTC  336

seq1  TTTGATATATGCTGGTATTATATATATATATATATATATATATATATATA  400
      | ||  ||  | | |    || ||||||||||||||||||||||||||||
seq2  TCTGTAATTAGATAG----ATTTATATATATATATATATATATATATATA  382

seq1  TATATATATATATATATATATTATACTGAAGGCATGTTGAGTTTCATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATTATACTGAAGGCATGTTGAGTTTCATCAA  432

seq1  AAGACATTTTCATAGCTGTTAGCATGAATGTAGTTTTAATTTTTCATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTTTCATAGCTGTTAGCATGAATGTAGTTTTAATTTTTCATATT  482

seq1  TTGAATAAACACTGTTATAAAAATATAATCACACACCAAAATTGACTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAACACTGTTATAAAAATATAATCACACACCAAAATTGACTAAA  532

seq1  CTGGAATTCTATACATCTCAATGAATTTCAAAACATTTATTCATTTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTCTATACATCTCAATGAATTTCAAAACATTTATTCATTTAATT  582

seq1  TGATATTGTAGCAAGAATGCTTATGTTAGATGAACTCACTCCTTGGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTGTAGCAAGAATGCTTATGTTAGATGAACTCACTCCTTGGGACA  632

seq1  GGTAAAGAAACATCTGTCTGTAAATGACATAAGACTAGATGGTGTAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGAAACATCTGTCTGTAAATGACATAAGACTAGATGGTGTAAAGA  682

seq1  TCAATGTAGCATGTCCTCTCAGGATGGAAAAGTGCTAATCACTGAATTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTAGCATGTCCTCTCAGGATGGAAAAGTGCTAATCACTGAATTAG  732

seq1  AAAGGCTCTTGGGTCCTCTAAAATTCTTTAATATTTTTCCCCCAATTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTCTTGGGTCCTCTAAAATTCTTTAATATTTTTCCCCCAATTTTG  782

seq1  TCCATGAGTAGGCTTTTTCCTCTCTGTGGCTTTTCCCATGAGAAATTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAGTAGGCTTTTTCCTCTCTGTGGCTTTTCCCATGAGAAATTGTA  832

seq1  GAGGAATTTTGATCAAGCAGCATGCTTTCTCTGGCAATGGATCACAACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATTTTGATCAAGCAGCATGCTTTCTCTGGCAATGGATCACAACCA  882

seq1  AAGACCATCTAGATCTGTGTGATTGAGGTGGAACACAAATACCTTTAATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCATCTAGATCTGTGTGATTGAGGTGGAACACAAATACCTTTAATC  932

seq1  CCAGGAGACAGGTACAGGCAGAATTC  976
      ||||||||||||||||||||||||||
seq2  CCAGGAGACAGGTACAGGCAGAATTC  958

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information