BAC Information

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BAC

Clone NameB6Ng01-134I16
ChromosomeX (Build37)13 (Build37)
Map Location 156,543,679 - 156,544,89930,565,462 - 30,565,970
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040371, Rps6ka3, Eif1ay, Mtap7d2, A830080D01Rik, LOC100041359, Sh3kbp1, LOC667524
Downstream genePdha1, LOC100041403, LOC100041416, LOC100041427, Gpr64, Phka2, Ppef1, Rs1, Gja6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134I16.bB6Ng01-134I16.g
ACCDH934812DH934813
length1,215499
definitionDH934812|Mus musculus domesticus DNA, BAC clone: B6Ng01-134I16, 5' end.DH934813|Mus musculus domesticus DNA, BAC clone: B6Ng01-134I16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(156,543,679 - 156,544,899)(30,565,462 - 30,565,970)
sequence
gaattctataccaccccctggacacagcaggtgtctgagggctgggacag
atgaggtaaggcctcaaagagagccaggtgcaggacaaggcagttttcta
agacttgtgcatggttcaaatgtatcacaatgccattcactagttttctc
cagggtccagcctctggtagaactgacaaatgcctacacacatatcacca
tgggtggtcctttatctaaagtatttgtatagttccacatctctctgtcg
ctgttccatgtgagcagattacttacatgtgaatacagtagtgaatcaaa
gaatgcccaggtttccaccaatgctctgtatcttccaggtgtgagggaaa
gagggaatactgtgtctttgaagccctgcatgagccattttttttttcag
gcagctttttcttaagcaatatgttttgatttgttacataattcagtgat
gtgaagttctgaactcagagataggcctgggttctaacttactcctttag
tttcatcctgtgttaaatgtggaataatagtagatgccaccttctttgcc
caatcttatagaattatggaagtcatatacatagtactacatggaaatta
tttacaggctatcagctactgatcagaagtcagatgggggcaggcgttta
ttacagttgaatgtggactggatatagtgacttatttccagtgaatggaa
aagttagaggtgatagtggcagcaaagtgtccacttccttctatcagctg
attctcactgatagaaattgtcttgagcagttctctagaagatgccatgt
gatgagagactgaagttaggaagctttctactcatcccaggatgaatgaa
ggagcttcaaagtagacctagcttctttagtctaacatttaaatcatgta
gccacaacccacatctggagtgcactctcagaggagactacctgtctact
cagatggatgcttctaagcatccatcttcatcttatatgagatcataata
accttttgtttggttatgttaagaaagatccagaagccttatggtatgcc
aagcaaatttgctactactgaactggtaccacatataccaaacatctttt
agctggctagtttggggagaaattatttaccccataaaataatgataggt
cctgcgtgagtatttacttttatatggggatgactcactggggtctatga
gagaaatttcacatt
tctgcactttgacaaattgtacaactttgtaatgttctccatagtttgct
aaaataagcttcttttatgagggatgagagttatacttatctgtgggcat
aagggtaactatttagaattcagttagaaattatactggtttaagaagct
ggcagaagtaggttctcctctagggtccatgaccatgaatagttgtctag
gcttacagtacaagccatgaattctcttccattgagcaggtcttaagtca
tactcgactgctattggtcacttctaagatataagtgccactactgcacc
atgggggatattttgccacattggtcatttttgtgcttttcccatgtctc
accccatgggaagaagagctaaaggcaactaatagctgcttgaaaaggga
ctgttattttttcccaggaatgagaccctaattgcttatccaataccagt
agtcagccctgaaatagtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_156543679_156544899
seq2: B6Ng01-134I16.b_48_1262

seq1  GAATTCTATACCACCCCCTGGACACAGCAGGTGTCTGAGGGCTGGGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATACCACCCCCTGGACACAGCAGGTGTCTGAGGGCTGGGACAG  50

seq1  ATGAGGTAAGGCCTCAAAGAGAGCCAGGTGCAGGACAAGGCAGTTTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTAAGGCCTCAAAGAGAGCCAGGTGCAGGACAAGGCAGTTTTCTA  100

seq1  AGACTTGTGCATGGTTCAAATGTATCACAATGCCATTCACTAGTTTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGTGCATGGTTCAAATGTATCACAATGCCATTCACTAGTTTTCTC  150

seq1  CAGGGTCCAGCCTCTGGTAGAACTGACAAATGCCTACACACATATCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCCAGCCTCTGGTAGAACTGACAAATGCCTACACACATATCACCA  200

seq1  TGGGTGGTCCTTTATCTAAAGTATTTGTATAGTTCCACATCTCTCTGTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGTCCTTTATCTAAAGTATTTGTATAGTTCCACATCTCTCTGTCG  250

seq1  CTGTTCCATGTGAGCAGATTACTTACATGTGAATACAGTAGTGAATCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCATGTGAGCAGATTACTTACATGTGAATACAGTAGTGAATCAAA  300

seq1  GAATGCCCAGGTTTCCACCAATGCTCTGTATCTTCCAGGTGTGAGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCCAGGTTTCCACCAATGCTCTGTATCTTCCAGGTGTGAGGGAAA  350

seq1  GAGGGAATACTGTGTCTTTGAAGCCCTGCATGAGCCATTTTTTTTTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAATACTGTGTCTTTGAAGCCCTGCATGAGCCATTTTTTTTTTCAG  400

seq1  GCAGCTTTTTCTTAAGCAATATGTTTTGATTTGTTACATAATTCAGTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTTTTCTTAAGCAATATGTTTTGATTTGTTACATAATTCAGTGAT  450

seq1  GTGAAGTTCTGAACTCAGAGATAGGCCTGGGTTCTAACTTACTCCTTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTTCTGAACTCAGAGATAGGCCTGGGTTCTAACTTACTCCTTTAG  500

seq1  TTTCATCCTGTGTTAAATGTGGAATAATAGTAGATGCCACCTTCTTTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCCTGTGTTAAATGTGGAATAATAGTAGATGCCACCTTCTTTGCC  550

seq1  CAATCTTATAGAATTATGGAAGTCATATACATAGTACTACATGGAAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTATAGAATTATGGAAGTCATATACATAGTACTACATGGAAATTA  600

seq1  TTTACAGGCTATCAGCTACTGATCAGAAGTCAGATGGGGGCAGGCGTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGGCTATCAGCTACTGATCAGAAGTCAGATGGGGGCAGGCGTTTA  650

seq1  TTACAGTTGAATGTGGACTGGATATAGTGACTTATTTCCAGTGAATGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTGAATGTGGACTGGATATAGTGACTTATTTCCAGTGAATGGAA  700

seq1  AAGTTAGAGGTGATAGTGGCAGCAAAGTGTCCACTTCCTTCTATCAGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGAGGTGATAGTGGCAGCAAAGTGTCCACTTCCTTCTATCAGCTG  750

seq1  ATTCTCACTGATAGAAATTGTCTTGAGCAGTTCTCTAGAAGATGCCATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCACTGATAGAAATTGTCTTGAGCAGTTCTCTAGAAGATGCCATGT  800

seq1  GATGAGAGACTGAAGTTAGGAAGCTTTCTACTCATCCCAGGATGAATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGAGACTGAAGTTAGGAAGCTTTCTACTCATCCCAGGATGAATGAA  850

seq1  GGAGCTTCAAAGTAGACCTAGCTTCTTTAGTCTAACATTTAAATCATGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTCAAAGTAGACCTAGCTTCTTTAGTCTAACATTTAAATCATGTA  900

seq1  GCCACAACCCACATCTGGAGTGCACTCTCAGAGGAGACTACCTGTCTACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAACCCACATCTGGAGTGCACTCTCAGAGGAGACTACCTGTCTACT  950

seq1  CAGATGGATGCTTCTAAGCATCCATCTTCAATCTTATATGAGATCATAAT  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGATGGATGCTTCTAAGCATCCATCTTC-ATCTTATATGAGATCATAAT  999

seq1  AACCTTT--GTTGGTTATGTTAAGGAAAGATCCCAGAGCCTTAT-GTATG  1047
      |||||||   ||||||||||||| |||||||||   |||||||| |||||
seq2  AACCTTTTGTTTGGTTATGTTAA-GAAAGATCCAGAAGCCTTATGGTATG  1048

seq1  CCAAGCAAATATGCTACTACTGACCT-GTACCACATATACCAATACATTC  1096
      |||||||||| |||||||||||| || |||||||||||||||| ||| ||
seq2  CCAAGCAAATTTGCTACTACTGAACTGGTACCACATATACCAA-ACA-TC  1096

seq1  TTTTAAGCT-GCTAAATTTGGGAGTAATTTATTACACCACAATAAATAAT  1145
      |||| |||| ||||  || ||||| ||||  |||| ||| |  |||||||
seq2  TTTT-AGCTGGCTAGTTTGGGGAGAAATTATTTACCCCATA--AAATAAT  1143

seq1  ATGATGTCCTTGCTGAGTTATTACTTTTATAATGGTTGAT-ACTCACTGT  1194
         | |||||   |||||  |||||||||||  ||  ||| |||||||| 
seq2  GATAGGTCCTGCGTGAGTATTTACTTTTATATGGG--GATGACTCACTGG  1191

seq1  GGTCTCATACAGAGA-AAATTCCACATT  1221
      ||||| ||   |||| ||||| ||||||
seq2  GGTCT-AT---GAGAGAAATTTCACATT  1215

seq1: chr13_30565462_30565970
seq2: B6Ng01-134I16.g_430_574 (reverse)

seq1  CACACACACACAAACACACACACACACACACACACACATACACACACACA  50
                    |||||||||||||||||||||||| ||||| ||   
seq2  --------------CACACACACACACACACACACACACACACATACTAT  36

seq1  CACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  100
        |||                                           | 
seq2  TTCAG-------------------------------------------GG  43

seq1  CAGACACACACACACCAAAGAAGTAATGAGAGAGCTAACACAGGATTCC-  149
      | |||  ||    |    | ||| ||| || |  ||        ||||| 
seq2  CTGAC-TACTGGTATTGGATAAGCAATTAG-GGTCT-------CATTCCT  84

seq1  ----AAATCTGAGATTTTGTTTTTTGGGGGATGTGGGTATTTTGAGACGG  195
          |||  | | | |   ||||       | |  | ||||   ||  | 
seq2  GGGAAAAAATAACAGTCCCTTTT------CAAGCAGCTATT---AGTTGC  125

seq1  GTTTCTCTGTGTATCCCTAGCTGTCCTGGAATTTGCTCTACAGACCAGGC  245
       |||  || |   ||||  |                              
seq2  CTTTAGCTCTTCTTCCCATG------------------------------  145

seq1  TAGCCCTGAATTCCCAGAGATCTGCCTGCCTCTTCCTTCTGAGTGCTGGG  295
                                                        
seq2  --------------------------------------------------  145

seq1  ATTAAAGCTTTGTGTCACTATCACCTGACTGGATTTCAGATCTTAAGAAT  345
                                                        
seq2  --------------------------------------------------  145

seq1  TCTGTGTTGGTGGATTTTGCGTTTAGTTCAATGGCTTTGACTCTTGAGCT  395
                                                        
seq2  --------------------------------------------------  145

seq1  GGCCAGATTCCTGACCCCGCTACCACCTTCCAAAAACAGAGCATAGGCAA  445
                                                        
seq2  --------------------------------------------------  145

seq1  ACCAGTGTCCATGATCTGCCACATAAAGTTTCATTCCTTAGTATTATCAA  495
                                                        
seq2  --------------------------------------------------  145

seq1  CTCTTCTTCCCATG  509
                    
seq2  --------------  145