BAC Information

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BAC

Clone NameB6Ng01-134O12
ChromosomeX (Build37)
Map Location 13,956,105 - 14,041,995
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043947, LOC100043948, Nyx, LOC675416, Cask, Gpr34, Gpr82, LOC385327, EG385328
Downstream geneLOC668991, 4930403L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134O12.bB6Ng01-134O12.g
ACCDH935087DH935088
length1,1771,129
definitionDH935087|Mus musculus domesticus DNA, BAC clone: B6Ng01-134O12, 5' end.DH935088|Mus musculus domesticus DNA, BAC clone: B6Ng01-134O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,040,808 - 14,041,995)(13,956,105 - 13,957,233)
sequence
gaattccagagagattaaaccataaccctgacaatatctttgttttgggt
gaatagaactgaatttgaaaatctgacattcagaattataagggaaaaat
atttttgttgttttaagtcaccaaggttgtggtcacttctgataggtatc
acaagagttctatacactatttctacatattacatataagtcaactaaat
atttggacttaggtgcatttatccttaaatataatagtgtatgaactaag
ccaccagcctaggcaacaaaatccttttccactcacatatattgaagtat
actacccgaaagagtatatttgaagtttttttctctatttttagcaaaaa
atatatatcattttgggatctccctgaaagtggtgatctccccttaggag
atgtccagagactccaaagttatatatagtgttataaaagtttaatagta
aaactatgtgtagcttctagatcatagatttttaaataataaagcagaat
cacaatgtaagggatatcaggtaacggttggctaaagcaggcctaatcct
aatgatgtcagtatgaacactgaggagaacaagatcatgaatatatatga
aatataaacactatcaaaaagtacaccttattgattctgtattgtgataa
tggcatgttttgcctaaaagagacaatgtttctttatgtctccagaattt
agccaagatttcattagataactctccctgttatccagaaagtgtgttca
acaataaagtatcatggcttctagaagcatgggcaaacagtgtgctcatc
aggctgaattatatcccccacttgattatgagggatatacgactgttcct
aggactagtaagactttggattcttagactgttttgaggatggggagatg
aataaaaaagaatctggactttagaagaatgcagccttgagtagctaaat
ggaaatactgatcccccccccttatagggagtttactgggttatgatttt
aagttttagttaactatagtcactacaggctaaaactttaagtgggaaaa
ttcccaaaataataatatttaaatgtctaattctgagtatatgaaaaaaa
attcttcttcatcccacttggtttcatctccttctagaatatcatgcctg
aaatgttgccaccttgtatatgcccac
gaattcaatgaaaatgaaggcacaacatacccaaatttatgggacacaat
gaaagtactgctaagagaaaagttcatagaactaagtggttccataaaga
aattagaaaattcttgtaccggcaatttaaaagtatgtctgaaagctcta
gagaaaaaaaatattttaaaaaaagaagcaaacacaccaaggaggattag
aaggcaggaaataataaacattacattccctcattccttcataaaacaat
aagaattttttcaatctttttcttagcactggaattgtgagagagctggg
tgtagagtgataccaggtactgaagggaaagatcattataattcaacatg
acacatgctactgaagaaagaacatgcttagcctctgagatacattaact
aaagggaaattattaacaaagaattaaataaaatagcaactacattgagt
ttagaaactcctaaagaattcatgagtcagaaaatcaaaattaaaattaa
tgaaaatgagtcagaaaatagtggagtaccaaatattgtgacacacagtt
ttaagaaaggctaacaagaaaaatttatagcctcaaatcctaaaattaag
gaagaaaaaagggtagtaagtaagtcatgtatcaaagtcaagattttctt
tttcccccccttttaaaaataggtattttcttcatttacatttcaaatgc
tatcccaaaattcccccataccctctcccccccacttccctacccaccca
ctgccacttcttggcactggcgttcccctgtacacaagcatataaagttt
gcaagaccaaggggcctctctttgcagtgatggcctactaggccatcttc
tgatacatatgcagctagagtcaagagctccggggtactggttagttcat
aatgttgttccacctatagggttgcagatccctttagctccttggctact
ttctctagctcctccattgggggccctgtgatccatccatagctgactgt
gatcatccacttctgtgtttgctaggcccggcagagtctcacaagaaaca
gctatattctgggtacttttcaccaaattatgctaaataatgcaatgggt
gtccagggttgatgctgatatatggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_14040808_14041995
seq2: B6Ng01-134O12.b_45_1221 (reverse)

seq1  GTGGGCATATTACTAAAGGGTTGGCAACATATACAGCATGGATAATCTAG  50
      ||||||||| |||  ||||  ||||||||| |   |||| |||| |||||
seq2  GTGGGCATA-TAC--AAGG--TGGCAACATTTCAGGCAT-GATATTCTAG  44

seq1  AAAAGGAGATGAGACAGAGTGAGATGAAGAGAGAA-TTTTTTTCATATTA  99
        |||||||||| ||  |||| |||||||| |||| ||||||||||| ||
seq2  --AAGGAGATGAAACCAAGTGGGATGAAGA-AGAATTTTTTTTCATA-TA  90

seq1  CTCAGAATGTAGACATTTAAATATTATTATTTTGGGAATTTT-CCACTTA  148
      |||||||| ||||||||||||||||||||||||||||||||| |||||||
seq2  CTCAGAAT-TAGACATTTAAATATTATTATTTTGGGAATTTTCCCACTTA  139

seq1  AAGTTTTAGCCTGTAGTTGACTATAGTTAACTAAAACTTAAAATCATAA-  197
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  AAGTTTTAGCCTGTAG-TGACTATAGTTAACTAAAACTTAAAATCATAAC  188

seq1  CCAGTAAAACTCCCTATAAGGGGGGGGGGATCAGTATTTCCATTTAGCTA  247
      ||||| ||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCAGT-AAACTCCCTATAA-GGGGGGGGGATCAGTATTTCCATTTAGCTA  236

seq1  CTCAAGGCTGCATTCTTCTAAAGTCCAGATTCTTTTTTATTCATCTCCCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGCTGCATTCTTCTAAAGTCCAGATTCTTTTTTATTCATCTCCCC  286

seq1  ATCCTCAAAACAGTCTAAGAATCCAAAGTCTTACTAGTCCTAGGAACAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAAAACAGTCTAAGAATCCAAAGTCTTACTAGTCCTAGGAACAGT  336

seq1  CGTATATCCCTCATAATCAAGTGGGGGATATAATTCAGCCTGATGAGCAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATATCCCTCATAATCAAGTGGGGGATATAATTCAGCCTGATGAGCAC  386

seq1  ACTGTTTGCCCATGCTTCTAGAAGCCATGATACTTTATTGTTGAACACAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTGCCCATGCTTCTAGAAGCCATGATACTTTATTGTTGAACACAC  436

seq1  TTTCTGGATAACAGGGAGAGTTATCTAATGAAATCTTGGCTAAATTCTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGATAACAGGGAGAGTTATCTAATGAAATCTTGGCTAAATTCTGG  486

seq1  AGACATAAAGAAACATTGTCTCTTTTAGGCAAAACATGCCATTATCACAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAAAGAAACATTGTCTCTTTTAGGCAAAACATGCCATTATCACAA  536

seq1  TACAGAATCAATAAGGTGTACTTTTTGATAGTGTTTATATTTCATATATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAATCAATAAGGTGTACTTTTTGATAGTGTTTATATTTCATATATA  586

seq1  TTCATGATCTTGTTCTCCTCAGTGTTCATACTGACATCATTAGGATTAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGATCTTGTTCTCCTCAGTGTTCATACTGACATCATTAGGATTAGG  636

seq1  CCTGCTTTAGCCAACCGTTACCTGATATCCCTTACATTGTGATTCTGCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTAGCCAACCGTTACCTGATATCCCTTACATTGTGATTCTGCTT  686

seq1  TATTATTTAAAAATCTATGATCTAGAAGCTACACATAGTTTTACTATTAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTAAAAATCTATGATCTAGAAGCTACACATAGTTTTACTATTAA  736

seq1  ACTTTTATAACACTATATATAACTTTGGAGTCTCTGGACATCTCCTAAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATAACACTATATATAACTTTGGAGTCTCTGGACATCTCCTAAGG  786

seq1  GGAGATCACCACTTTCAGGGAGATCCCAAAATGATATATATTTTTTGCTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCACCACTTTCAGGGAGATCCCAAAATGATATATATTTTTTGCTA  836

seq1  AAAATAGAGAAAAAAACTTCAAATATACTCTTTCGGGTAGTATACTTCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAGAAAAAAACTTCAAATATACTCTTTCGGGTAGTATACTTCAA  886

seq1  TATATGTGAGTGGAAAAGGATTTTGTTGCCTAGGCTGGTGGCTTAGTTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGAGTGGAAAAGGATTTTGTTGCCTAGGCTGGTGGCTTAGTTCA  936

seq1  TACACTATTATATTTAAGGATAAATGCACCTAAGTCCAAATATTTAGTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTATTATATTTAAGGATAAATGCACCTAAGTCCAAATATTTAGTTG  986

seq1  ACTTATATGTAATATGTAGAAATAGTGTATAGAACTCTTGTGATACCTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATATGTAATATGTAGAAATAGTGTATAGAACTCTTGTGATACCTAT  1036

seq1  CAGAAGTGACCACAACCTTGGTGACTTAAAACAACAAAAATATTTTTCCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGACCACAACCTTGGTGACTTAAAACAACAAAAATATTTTTCCC  1086

seq1  TTATAATTCTGAATGTCAGATTTTCAAATTCAGTTCTATTCACCCAAAAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTCTGAATGTCAGATTTTCAAATTCAGTTCTATTCACCCAAAAC  1136

seq1  AAAGATATTGTCAGGGTTATGGTTTAATCTCTCTGGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATTGTCAGGGTTATGGTTTAATCTCTCTGGAATTC  1177

seq1: chrX_13956105_13957233
seq2: B6Ng01-134O12.g_71_1199

seq1  GAATTCAATGAAAATGAAGGCACAACATACCCAAATTTATGGGACACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAAAATGAAGGCACAACATACCCAAATTTATGGGACACAAT  50

seq1  GAAAGTACTGCTAAGAGAAAAGTTCATAGAACTAAGTGGTTCCATAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTACTGCTAAGAGAAAAGTTCATAGAACTAAGTGGTTCCATAAAGA  100

seq1  AATTAGAAAATTCTTGTACCGGCAATTTAAAAGTATGTCTGAAAGCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAAATTCTTGTACCGGCAATTTAAAAGTATGTCTGAAAGCTCTA  150

seq1  GAGAAAAAAAATATTTTAAAAAAAGAAGCAAACACACCAAGGAGGATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAAAATATTTTAAAAAAAGAAGCAAACACACCAAGGAGGATTAG  200

seq1  AAGGCAGGAAATAATAAACATTACATTCCCTCATTCCTTCATAAAACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGAAATAATAAACATTACATTCCCTCATTCCTTCATAAAACAAT  250

seq1  AAGAATTTTTTCAATCTTTTTCTTAGCACTGGAATTGTGAGAGAGCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTTTTCAATCTTTTTCTTAGCACTGGAATTGTGAGAGAGCTGGG  300

seq1  TGTAGAGTGATACCAGGTACTGAAGGGAAAGATCATTATAATTCAACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGTGATACCAGGTACTGAAGGGAAAGATCATTATAATTCAACATG  350

seq1  ACACATGCTACTGAAGAAAGAACATGCTTAGCCTCTGAGATACATTAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCTACTGAAGAAAGAACATGCTTAGCCTCTGAGATACATTAACT  400

seq1  AAAGGGAAATTATTAACAAAGAATTAAATAAAATAGCAACTACATTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAATTATTAACAAAGAATTAAATAAAATAGCAACTACATTGAGT  450

seq1  TTAGAAACTCCTAAAGAATTCATGAGTCAGAAAATCAAAATTAAAATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACTCCTAAAGAATTCATGAGTCAGAAAATCAAAATTAAAATTAA  500

seq1  TGAAAATGAGTCAGAAAATAGTGGAGTACCAAATATTGTGACACACAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGAGTCAGAAAATAGTGGAGTACCAAATATTGTGACACACAGTT  550

seq1  TTAAGAAAGGCTAACAAGAAAAATTTATAGCCTCAAATCCTAAAATTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAGGCTAACAAGAAAAATTTATAGCCTCAAATCCTAAAATTAAG  600

seq1  GAAGAAAAAAGGGTAGTAAGTAAGTCATGTATCAAAGTCAAGATTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAAAGGGTAGTAAGTAAGTCATGTATCAAAGTCAAGATTTTCTT  650

seq1  TTTCCCCCCCTTTTAAAAATAGGTATTTTCTTCATTTACATTTCAAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCCCCTTTTAAAAATAGGTATTTTCTTCATTTACATTTCAAATGC  700

seq1  TATCCCAAAATTCCCCCATACCCTCTCCCCCCCACTTCCCTACCCACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAAAATTCCCCCATACCCTCTCCCCCCCACTTCCCTACCCACCCA  750

seq1  CTGCCACTTCTTGGCACTGGCGTTCCCCTGTACACAAGCATATAAAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACTTCTTGGCACTGGCGTTCCCCTGTACACAAGCATATAAAGTTT  800

seq1  GCAAGACCAAGGGGCCTCTCTTTGCAGTGATGGCCTACTAGGCCATCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACCAAGGGGCCTCTCTTTGCAGTGATGGCCTACTAGGCCATCTTC  850

seq1  TGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCAT  900

seq1  AATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTACT  950

seq1  TTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTG  1000
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCC-ATAGCTGACTG  999

seq1  TGATCATCCACTTCTGTGTTTGCTAGGCCCCGGCAGAGTCTCACAAGAGA  1050
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  TGATCATCCACTTCTGTGTTTGCTAGG-CCCGGCAGAGTCTCACAAGAAA  1048

seq1  CAGCTATA-TCTGGGTAC-TTTCAACAAATTATTGCTAGTATATGCAAT-  1097
      |||||||| ||||||||| ||||| ||||||| |||||    ||||||| 
seq2  CAGCTATATTCTGGGTACTTTTCACCAAATTA-TGCTAAATAATGCAATG  1097

seq1  GGTGT-CAGCGTTTGGATGCTGAT-TATGGGGTG  1129
      ||||| ||| |||  ||||||||| |||||||||
seq2  GGTGTCCAGGGTT--GATGCTGATATATGGGGTG  1129