BAC Information

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BAC

Clone NameB6Ng01-135G24
Chromosome4 (Build37)X (Build37)
Map Location 98,437,754 - 98,438,90153,811,000 - 53,811,268
singlet/doubletsingletsinglet
Overlap geneAnkrd38
Upstream geneNfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1
Downstream geneLOC100039541, Usp1, Dock7, Angptl3, LOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135G24.bB6Ng01-135G24.g
ACCDH935472DH935473
length1,149791
definitionDH935472|Mus musculus domesticus DNA, BAC clone: B6Ng01-135G24, 5' end.DH935473|Mus musculus domesticus DNA, BAC clone: B6Ng01-135G24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(98,437,754 - 98,438,901)(53,811,000 - 53,811,268)
sequence
gaattcagtaggaaaagaaaatacgatacaaaaagacccttactgtagtg
ccagctactcatgaggctgaggcaggagaatgatttgagtttaggagttc
agggatagcttgggcaatatagaaagaccccattttataagaacaaggag
gtaggccttcaaggaaggacagagtgtaacagccatttctgacctgtgtc
cagcagtagcttgacaatggcgaagttggagtgtgacacactgtagtgaa
gggctgtgttcccacttcggtcagccaggttgacaagtagcttcagaaga
tatggagagtgaggctggacctcaaggaggtaggcagccacagcctcagg
gctagataacttcctgctggacacacggaaccactcctgactgatggtat
tcaagctttgcctctgcaatgcaagattctgatcacaagagcgtccctgg
cctgggtaccctagttggatctcccagtgaccttggataggctcctgctt
ctctctcctcacttccccttagcattttgtatgatttatcgggggcgggg
ctgggggtggtctgagatggcaggaccacgaatcctgctgcacattcaat
gcccaaccctctacgtcccacccattggcaaccatgtacaaaacaaatat
caagtaaagacatcagttctgtgtgtgacaagcccaaatggttaaggcca
cgtgtttagaatatttaatctaaaggcaagagatgctattgggatgtggt
gattttaaatgactttatgctcactctggaaggggcactaggtgtagtta
ttaaattagcgtgaccagtcataagttctggttcagctctgtgagcatac
accctcatcaaatatttcttgtccctgttataaactggatctggcatcct
tgttttcaggattctatagggtgaggtatttaaaaacctactgtctctca
agcaggggcaaggtgagagagattcacatcctaaggtttggatttcatgg
gggggcggtgctaagcttgcattagaacatttggtacattgtccacatta
gcttgcaaagacatttgtcccattgccaccagggatgggaggaatgttca
aggctgacaattctatgatagttagatattcttcttgatctagggaatc
gaattcaggacctctggaagagcaatcagtgctctttaccactgacccag
ctctccagccgttattaaaaaagaaaaaaaaaaaaaaaaaagccgggcgt
ggtggcgcacacctttagtcccagcacttgggaggcagaggcaggtggat
ttctgagttcgaggccagcctggtctagaaagtgagttccaggacagcca
gggctacactgagaaaccctgtctcaaaaaaccaaaaaaaaaaaaaaaaa
aatttattatatttataagagtacactgtagctgtttttaaacataccag
aagagggcccttttcttttttaaaaacaaaatatatactttttgaaacaa
ggtctgctgcagctcagtctggccttgaatttaatatgtaaagaatgacc
ggaacttcggatcctcctccttctcctccgtagtgctttcatcacaagga
ttatgtatgtagtgctgagagactaaccggggcttggtgcaagcaatcag
ctgcttaactagagaagattatgtgcaccaaatgtgtaagacccttggag
actagagggcatcagatctggaactggaataacagaaggttgtgagccac
ctggtgtgggtcttaggagcctaattttgggtccctctacaaggggcagt
aagcactcttaaccactaagccatggctccagcttaaatattcccttctc
ttgatgaatttgtatccagctttcaaaaccttcccctagggcctggagag
atgggctcaggggttaagagcactgactgctcttccgaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_98437754_98438901
seq2: B6Ng01-135G24.b_50_1198

seq1  GAATTCAGTAGGAAAAGAAAATACGATACAAAAAGACCCTTACTGTAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGGAAAAGAAAATACGATACAAAAAGACCCTTACTGTAGTG  50

seq1  CCAGCTACTCATGAGGCTGAGGCAGGAGAATGATTTGAGTTTAGGAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTACTCATGAGGCTGAGGCAGGAGAATGATTTGAGTTTAGGAGTTC  100

seq1  AGGGATAGCTTGGGCAATATAGAAAGACCCCATTTTATAAGAACAAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATAGCTTGGGCAATATAGAAAGACCCCATTTTATAAGAACAAGGAG  150

seq1  GTAGGCCTTCAAGGAAGGACAGAGTGTAACAGCCATTTCTGACCTGTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCCTTCAAGGAAGGACAGAGTGTAACAGCCATTTCTGACCTGTGTC  200

seq1  CAGCAGTAGCTTGACAATGGCGAAGTTGGAGTGTGACACACTGTAGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTAGCTTGACAATGGCGAAGTTGGAGTGTGACACACTGTAGTGAA  250

seq1  GGGCTGTGTTCCCACTTCGGTCAGCCAGGTTGACAAGTAGCTTCAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGTTCCCACTTCGGTCAGCCAGGTTGACAAGTAGCTTCAGAAGA  300

seq1  TATGGAGAGTGAGGCTGGACCTCAAGGAGGTAGGCAGCCACAGCCTCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGAGTGAGGCTGGACCTCAAGGAGGTAGGCAGCCACAGCCTCAGG  350

seq1  GCTAGATAACTTCCTGCTGGACACACGGAACCACTCCTGACTGATGGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATAACTTCCTGCTGGACACACGGAACCACTCCTGACTGATGGTAT  400

seq1  TCAAGCTTTGCCTCTGCAATGCAAGATTCTGATCACAAGAGCGTCCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTTTGCCTCTGCAATGCAAGATTCTGATCACAAGAGCGTCCCTGG  450

seq1  CCTGGGTACCCTAGTTGGATCTCCCAGTGACCTTGGATAGGCTCCTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTACCCTAGTTGGATCTCCCAGTGACCTTGGATAGGCTCCTGCTT  500

seq1  CTCTCTCCTCACTTCCCCTTAGCATTTTGTATGATTTATCGGGGGCGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCTCACTTCCCCTTAGCATTTTGTATGATTTATCGGGGGCGGGG  550

seq1  CTGGGGGTGGTCTGAGATGGCAGGACCACGAATCCTGCTGCACATTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGTGGTCTGAGATGGCAGGACCACGAATCCTGCTGCACATTCAAT  600

seq1  GCCCAACCCTCTACGTCCCACCCATTGGCAACCATGTACAAAACAAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACCCTCTACGTCCCACCCATTGGCAACCATGTACAAAACAAATAT  650

seq1  CAAGTAAAGACATCAGTTCTGTGTGTGACAAGCCCAAATGGTTAAGGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAAGACATCAGTTCTGTGTGTGACAAGCCCAAATGGTTAAGGCCA  700

seq1  CGTGTTTAGAATATTTAATCTAAAGGCAAGAGATGCTATTGGGATGTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTTAGAATATTTAATCTAAAGGCAAGAGATGCTATTGGGATGTGGT  750

seq1  GATTTTAAATGACTTTATGCTCACTCTGGAAGGGGCACTAGGTGTAGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAAATGACTTTATGCTCACTCTGGAAGGGGCACTAGGTGTAGTTA  800

seq1  TTAAATTAGCGTGACCAGTCATAAGTTCTGGTTCAGCTCTGTGAGCATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAGCGTGACCAGTCATAAGTTCTGGTTCAGCTCTGTGAGCATAC  850

seq1  ACCCTCATCAAATATTTCTTGTCCCTGTTATAAACTGGATCTGGCATCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCATCAAATATTTCTTGTCCCTGTTATAAACTGGATCTGGCATCCT  900

seq1  TGTTTTCAGGATTCTATAGGGTGAGGTAATTTAAAAACCTACTGTCTCTC  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGTTTTCAGGATTCTATAGGGTGAGGT-ATTTAAAAACCTACTGTCTCTC  949

seq1  AAGCAGGGGCAAGGTGAGAGAGATTCACATCCTAAGGTTT-GATTTCAT-  998
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  AAGCAGGGGCAAGGTGAGAGAGATTCACATCCTAAGGTTTGGATTTCATG  999

seq1  GGGGGGCGGTGCTAAGCTTGCATTAG-ACATTTGTCACATTGT-CACATT  1046
      |||||||||||||||||||||||||| |||||||  ||||||| ||||||
seq2  GGGGGGCGGTGCTAAGCTTGCATTAGAACATTTGGTACATTGTCCACATT  1049

seq1  AGCTTGCATAGACATTTGTCACATTTGCACAACAGGAATGGGA-GAATGA  1095
      |||||||| ||||||||||| ||||  |||  |||| |||||| ||||| 
seq2  AGCTTGCAAAGACATTTGTCCCATTGCCAC--CAGGGATGGGAGGAATG-  1096

seq1  TTCAAGGCTGACACATTTCTA-GATAG-TAGAATATCTTCTTGATCTAGG  1143
      ||||||||||  ||| ||||| ||||| ||||   |||||||||||||||
seq2  TTCAAGGCTG--ACAATTCTATGATAGTTAGATATTCTTCTTGATCTAGG  1144

seq1  GAATC  1148
      |||||
seq2  GAATC  1149

seq1: chrX_53811000_53811268
seq2: B6Ng01-135G24.g_73_312 (reverse)

seq1  TTTTTTTTTTTGGTTTTTTTTTTTTTTTTCGAGACAGGGTTTCTCTGTGT  50
      |||||||||||||||||||           ||||||||||||||| ||||
seq2  TTTTTTTTTTTGGTTTTTT-----------GAGACAGGGTTTCTCAGTGT  39

seq1  AGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACT  100
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCCCTGGCTGTCCTGGAACTCACTTTCTAGACCAGGCTGGCCTCGAACT  89

seq1  CAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCG  150
      ||||||||| ||||||||||||||||||||||||||| |||||| |||||
seq2  CAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGACTAAAGGTGTGCG  139

seq1  CCACAACGGCCGGCTAGCACCACTCTTTTGAGATATTTTAATAGTTACAA  200
      |||| ||| ||||||          ||||    | ||||  |  ||   |
seq2  CCACCACGCCCGGCT----------TTTTTTTTTTTTTTTTTCTTTTTTA  179

seq1  ATAAAAGTTTTGGAGCTGAAGAGATGGCTCAGAGGTTCAGAGCACTGACT  250
      ||||          |||| |||| ||| |||| |||  |||||||||| |
seq2  ATAA--------CGGCTGGAGAGCTGGGTCAGTGGTAAAGAGCACTGATT  221

seq1  GCTCTTCCAGAGGTCCTGA  269
      |||||||||||||||||||
seq2  GCTCTTCCAGAGGTCCTGA  240