BAC Information

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BAC

Clone NameB6Ng01-136L22
Chromosome4 (Build37)X (Build37)
Map Location 143,915,218 - 143,916,33798,219,071 - 98,219,593
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150
Downstream geneLOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136L22.bB6Ng01-136L22.g
ACCDH936436DH936437
length1,096997
definitionDH936436|Mus musculus domesticus DNA, BAC clone: B6Ng01-136L22, 5' end.DH936437|Mus musculus domesticus DNA, BAC clone: B6Ng01-136L22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(143,915,218 - 143,916,337)(98,219,071 - 98,219,593)
sequence
gaattcactttgtagaccaggctggcctcaaactcagaaatcctcctgcc
tctgcctctgaagccatgatttttttttaaatctatttacttatttactt
atttgggaggacagtcatgggagacagacattgaggcgggagaagatcca
ggggagctttttccaagtgtgtgggttcctgtaaatgaacttagatagtt
aggcttaatgtcaacaccatttccaattgtgccttttcacaagatacatg
gctccctggttaaatgaaaaaattagttattttgttttgtttttaagttt
gagacagaataccattgtgatgcacggtggctgggtgacacttgcctgtg
tagattcagagattcttttgctcctgcctcccaagtgttaaaatttaagg
catgaaccactataccctgctcactactcagtcacaatttcctctttttt
ggccagtacccaggctgattctttccccgacactgacattacccttcagg
gcaccaaggacagcttctccctcaatgcccactttctttgttttggtttg
gatttacatgagattagaaaaaatgatggcgtgactggagaagtggctca
gcggttaagagcacagactgctcttccaaaggttccgagttcaaatccca
gcaaccacatggtgactcacaaccacctgtaatgagatctgatgccctct
tctggtgcatctgaagacagctacagtgtacttaaataaaataataaatg
aatcgaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaagaagaagaagaaagaaagaaagaaagaaagaagaagaagaagaag
aagaggaaggaaggaagatagatggtgttatagctcagctgtctcatctt
gctgtgtagctcagactttgatggactgtctggcatcctccagcctctgt
cttctcaactatcacagctgatgactgacagagcatcagctcagcttgat
gaaaactccgaaacacattcacagttgtgaaatattacttcgttaatttt
ttctaaggtttctctatttttttttcgagacaggattctctgtata
gaattcaatatgtggctgaacttgaaaatgcattccttgaaacggtctgg
agacgatatgagatatgaatatgcatgccattttttttatttatttattt
atttatttatttatttatttatttatttatttgtttgtttgtttgtttat
agaaagaacagggaaatggctcagcagttaagagcattagctgttcttgc
agagcaccagagttcagttcacagcacccatgtgtcagtcagttcatagc
catccttaacctacattaggggatccaatgcatatgcatacacacaggaa
aacatgcataaaagtaaatcaataagaaaaaacatttcatattccagatg
gcctccagagcttcccagaacaaccttggttctgactaccatttgatagc
ctgagacctgactttggatgtctgtttaaagacttgagcccaggaaaaac
tccctatagctcagcttttctttctagttcccttcctctctatttcctgc
ctctctttactgaaaatgtctttttttttatttattaggtattttcttca
tttacatttccaatgctatccccaaagtctcccataccctactcccccac
ccccctatccacccactcccacttcttggtcctggcttcccctgtactga
ggcatataaagtttgcaagagcaaggggcctctctttccaatgatggcca
actaggccatcttctgctacatttgcagctagagacatgagctccatggg
gtactggttagttcatattgttgttccacttatagggttgcaggcccatt
tagctccttgggtactttctctagctcctccattgggggccctgagatcc
atccaatagctgactgtgagcatccacttctgtgtttgctaggcccggca
tagcctcacagaaacagctatatcagggtcctttcagaaaaatctgctag
tgtatgcaatggtgtcagcgtttggagctgattatgggatggatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_143915218_143916337
seq2: B6Ng01-136L22.b_39_1134

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCTCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCTCCTGCC  50

seq1  TCTGCCTCTGAAGCCATGATTTTTTTTTAAATCTATTTACTTATTTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTGAAGCCATGATTTTTTTTTAAATCTATTTACTTATTTACTT  100

seq1  ATTTGGGAGGACAGTCATGGGAGACAGACATTGAGGCGGGAGAAGATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGAGGACAGTCATGGGAGACAGACATTGAGGCGGGAGAAGATCCA  150

seq1  GGGGAGCTTTTTCCAAGTGTGTGGGTTCCTGTAAATGAACTTAGATAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCTTTTTCCAAGTGTGTGGGTTCCTGTAAATGAACTTAGATAGTT  200

seq1  AGGCTTAATGTCAACACCATTTCCAATTGTGCCTTTTCACAAGATACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTAATGTCAACACCATTTCCAATTGTGCCTTTTCACAAGATACATG  250

seq1  GCTCCCTGGTTAAATGAAAAAATTAGTTATTTTGTTTTGTTTTTAAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTGGTTAAATGAAAAAATTAGTTATTTTGTTTTGTTTTTAAGTTT  300

seq1  GAGACAGAATACCATTGTGATGCACGGTGGCTGGGTGACACTTGCCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAATACCATTGTGATGCACGGTGGCTGGGTGACACTTGCCTGTG  350

seq1  TAGATTCAGAGATTCTTTTGCTCCTGCCTCCCAAGTGTTAAAATTTAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCAGAGATTCTTTTGCTCCTGCCTCCCAAGTGTTAAAATTTAAGG  400

seq1  CATGAACCACTATACCCTGCTCACTACTCAGTCACAATTTCCTCTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACCACTATACCCTGCTCACTACTCAGTCACAATTTCCTCTTTTTT  450

seq1  GGCCAGTACCCAGGCTGATTCTTTCCCCGACACTGACATTACCCTTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTACCCAGGCTGATTCTTTCCCCGACACTGACATTACCCTTCAGG  500

seq1  GCACCAAGGACAGCTTCTCCCTCAATGCCCACTTTCTTTGTTTTGGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAAGGACAGCTTCTCCCTCAATGCCCACTTTCTTTGTTTTGGTTTG  550

seq1  GATTTACATGAGATTAGAAAAAATGATGGCGTGACTGGAGAAGTGGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACATGAGATTAGAAAAAATGATGGCGTGACTGGAGAAGTGGCTCA  600

seq1  GCGGTTAAGAGCACAGACTGCTCTTCCAAAGGTTCCGAGTTCAAATCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTTAAGAGCACAGACTGCTCTTCCAAAGGTTCCGAGTTCAAATCCCA  650

seq1  GCAACCACATGGTGACTCACAACCACCTGTAATGAGATCTGATGCCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCACATGGTGACTCACAACCACCTGTAATGAGATCTGATGCCCTCT  700

seq1  TCTGGTGCATCTGAAGACAGCTACAGTGTACTTAAATAAAATAATAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGCATCTGAAGACAGCTACAGTGTACTTAAATAAAATAATAAATG  750

seq1  AATCGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  800

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  850
      |||||  | |  ||||||||||||||||||||||| |||||   ||||| 
seq2  AAGAAGAAGAAGAAGAAAGAAAGAAAGAAAGAAAG-AAGAA--GAAGAAG  847

seq1  GAAAGAAGGAAGGAAGGAAAGATAGATTGGTGTTTATTAGCTCAAGCTGT  900
       | |  ||||||||||| |||||||| |||||||   |||||| ||||||
seq2  AAGAAGAGGAAGGAAGG-AAGATAGA-TGGTGTT--ATAGCTC-AGCTGT  892

seq1  CCTCAATCTTGCTGTGTAGCTCAAGACTTTGAATGGACCTGTCTGGCATC  950
       ||| ||||||||||||||||| |||||||| ||||| ||||||||||||
seq2  -CTC-ATCTTGCTGTGTAGCTC-AGACTTTG-ATGGA-CTGTCTGGCATC  937

seq1  CTCCAGCCTCTGTCTTCTCAAACTATCACAGCTGATGACTGACAGAGCAT  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTCCAGCCTCTGTCTTCTC-AACTATCACAGCTGATGACTGACAGAGCAT  986

seq1  CAGGCTCAGCCTTGATGAGAACTCCAAAACACATTCACAGTTGTGGAAAT  1050
      || |||||| |||||||| |||||| |||||||||||||||||| |||||
seq2  CA-GCTCAG-CTTGATGAAAACTCCGAAACACATTCACAGTTGT-GAAAT  1033

seq1  ATTAACTTCCGGTTTATTTTTTCTAAAGGTTTCTCTATTTTTTTTTTTCG  1100
      ||| |||||  ||| ||||||||| ||||||||||||  |||||||||||
seq2  ATT-ACTTC--GTTAATTTTTTCT-AAGGTTTCTCTA--TTTTTTTTTCG  1077

seq1  AGACAGGGTTTCTCTGTATA  1120
      ||||| || |||||||||||
seq2  AGACA-GGATTCTCTGTATA  1096

seq1: chrX_98219071_98219593
seq2: B6Ng01-136L22.g_592_1065 (reverse)

seq1  GAGATCCATCCCATGATCAGCTTCCAAACGCTGACACCATTGCATACACT  50
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  GAGATCCATCCCATAATCAGC-TCCAAACGCTGACACCATTGCATACACT  49

seq1  AGCAAGATTTTGCTGAAAGGACCCAGATATAGCTGTCTCTTGTGAGACTA  100
      ||| ||||||| |||||||||||| ||||||||||| || |||||| |||
seq2  AGC-AGATTTTTCTGAAAGGACCCTGATATAGCTGTTTC-TGTGAGGCTA  97

seq1  TGCCAGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGAA  150
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGCC-GGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGA  146

seq1  TGGACCACAGGGCCCCCAATGGAGGAACTAGAGAAAGCACCCAAGGAACT  200
      |||| | ||||||||||||||||||| |||||||||| ||||||||| ||
seq2  TGGATCTCAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCT  196

seq1  AAAGGGAACTGCAACCCTATAGGTGGAACAACAATATGAACTAAGCAGTA  250
      ||| ||  ||||||||||||| |||||||||||||||||||||| |||||
seq2  AAATGGGCCTGCAACCCTATAAGTGGAACAACAATATGAACTAACCAGTA  246

seq1  CCCC--GGAGCTCTTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAG  298
      ||||  ||||||| |||||||||||||| ||||| || ||||||||||||
seq2  CCCCATGGAGCTCATGTCTCTAGCTGCAAATGTAGCAGAAGATGGCCTAG  296

seq1  TCGGCCATCACTGCAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGC  348
      | |||||||| || |||||||||||| |||  ||||||||||||||||||
seq2  TTGGCCATCATTGGAAAGAGAGGCCCCTTGCTCTTGCAAACTTTATATGC  346

seq1  CCCAGTACAGGGGAATGCCAGCGCCAAAAAGGGGGAGTGGGTGGGTAGGG  398
      | ||||||||||||| |||||  |||| ||| |||||||||||| |||||
seq2  CTCAGTACAGGGGAA-GCCAGGACCAAGAAGTGGGAGTGGGTGGATAGGG  395

seq1  GAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGTATTGGAAATGT  448
      | |||||||  |  ||||||||| |||||| || |||| |||||||||||
seq2  GGGTGGGGG-AGTAGGGTATGGGAGACTTTGGGGATAGCATTGGAAATGT  444

seq1  AAATGAGCTAAATACCTAATAAAAAGATGAAAAAAAGGAAATGTAAATGA  498
      ||||||   |||||||||||||    || |||||                
seq2  AAATGAAGAAAATACCTAATAA----ATAAAAAA----------------  474

seq1  AGAAAATACCTAATTAATTAAAAAA  523
                               
seq2  -------------------------  474