BAC Information

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BAC

Clone NameB6Ng01-137A10
Chromosome16 (Build37)X (Build37)
Map Location 5,991,364 - 5,992,55022,394,480 - 22,394,601
singlet/doubletsingletsinglet
Overlap geneA2bp1
Upstream geneSept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik, LOC100042436
Downstream geneLOC100042445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137A10.bB6Ng01-137A10.g
ACCDH936647DH936648
length1,172197
definitionDH936647|Mus musculus domesticus DNA, BAC clone: B6Ng01-137A10, 5' end.DH936648|Mus musculus domesticus DNA, BAC clone: B6Ng01-137A10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,991,364 - 5,992,550)(22,394,480 - 22,394,601)
sequence
gaattcattcttctcttctaacccctcacaggttctaaccaaatcattgt
ctttcctccaaacactctggtctttgctccttcttcctacttgcctttag
tgcattttatctacccaacattttctctttttgtttatgggttgtgtcag
tcattcaggaaccagcacagtttttattgcttcctcagaaatgccctttc
ctttgtctaagtagaagagattcttcctcctttctggttctttaagtctc
tttcagttctggatcatggctgcaatattttatggcatgatcatgatcta
cacttaatgaacataggatgagcatctctaatccaaaagtcccaaagctc
agtcattactagagtgcttgcccggggacatgagtagcagagactggtcc
ccagcattggaaagacagagaataagagagagaaagagatgggtggcaga
gaaggaaaaggacctccttctgaacatcaaccctcttgtgcccagtgtga
agctgccctggaaatttccatgtgatagaaactttatttcatgcacaaaa
tttggatgagtgttttatgaaacttcctttagaccacaatgtgaaagaaa
tgcataaaacatgaatgaattttatatttagacttgggttctgtccctat
gttatctcataaatatgcaaattttcctaactcttacaacacctaaaacc
caaacctttggactcatgcatttcagatgagtgatcctcaacctacagtc
tggtaagtaggtgaattagtaaagcaaacaccacggagctagggagaaca
gatgaaggcagaggctaagctgcacttagttcagctctgagctacacttt
gttctagctgtccttctaccatttattatttaccaacactttttcagcaa
taacgtggaagagaaaggagcttgtcgtcaggcacactgaaaagttgaat
tgcaggtttcatggcaaccaaggtgcgctcggagattttctagcctcgca
tgtttatgaaaacatttctcagcattatagaatgggcttgtgtactcgac
agaagtgctttaatcttaacaaccattatgctcatagtcgatgatgccct
gtgaatatttcatcaaattctaaatctcttgtgttgcctcacaggaactg
atccaatctaaccaggaaggca
tctccttctccctctctccctctctccccctctctcccttcttccccctc
tgtctttctctccccctccctcccccctctctccttctctctctctctct
ctctctctctctctctctctctctctctctctctctctgtatgtgtaaaa
atatatgtgtatggggagtgtgtattaaagaatataaatatatatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_5991364_5992550
seq2: B6Ng01-137A10.b_49_1220

seq1  GAATTCATTCTTCTCTTCTAACCCCTCACAGGATCTAACCAAATCATTGT  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATTCATTCTTCTCTTCTAACCCCTCACAGGTTCTAACCAAATCATTGT  50

seq1  CTTTCCTCCAAACACTCTGGTCTTTGCTCCTTCTTCCTACTTGCCTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCCAAACACTCTGGTCTTTGCTCCTTCTTCCTACTTGCCTTTAG  100

seq1  TGCATTTTATCTACCCAACATTTTCTCTTTTTGTTTATGGGTTGTGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTATCTACCCAACATTTTCTCTTTTTGTTTATGGGTTGTGTCAG  150

seq1  TCATTCAGGAACCAGCACAGTTTTTATTGCTTCCTCAGAAATGCCCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAGGAACCAGCACAGTTTTTATTGCTTCCTCAGAAATGCCCTTTC  200

seq1  CTTTGTCTAAGTAGAAGAGATTCTTCCTCCTTTCTGGTTCTTTAAGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTAAGTAGAAGAGATTCTTCCTCCTTTCTGGTTCTTTAAGTCTC  250

seq1  TTTCAGTTCTGGATCATGGCTGCAATATTTTATGGCATGATCATGATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTCTGGATCATGGCTGCAATATTTTATGGCATGATCATGATCTA  300

seq1  CACTTAATGAACATAGGATGAGCATCTCTAATCCAAAAGTCCCAAAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAATGAACATAGGATGAGCATCTCTAATCCAAAAGTCCCAAAGCTC  350

seq1  AGTCATTACTAGAGTGCTTGCCCGGGGACATGAGTAGCAGAGACTGGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTACTAGAGTGCTTGCCCGGGGACATGAGTAGCAGAGACTGGTCC  400

seq1  CCAGCATTGGAAAGACAGAGAATAAGAGAGAGAAAGAGATGGGTGGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATTGGAAAGACAGAGAATAAGAGAGAGAAAGAGATGGGTGGCAGA  450

seq1  GAAGGAAAAGGACCTCCTTCTGAACATCAACCCTCTTGTGCCCAGTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAAGGACCTCCTTCTGAACATCAACCCTCTTGTGCCCAGTGTGA  500

seq1  AGCTGCCCTGGAAATTTCCATGTGATAGAAACTTTATTTCATGCACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCCTGGAAATTTCCATGTGATAGAAACTTTATTTCATGCACAAAA  550

seq1  TTTGGATGAGTGTTTTATGAAACTTCCTTTAGACCACAATGTGAAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATGAGTGTTTTATGAAACTTCCTTTAGACCACAATGTGAAAGAAA  600

seq1  TGCATAAAACATGAATGAATTTTATATTTAGACTTGGGTTCTGTCCCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAAACATGAATGAATTTTATATTTAGACTTGGGTTCTGTCCCTAT  650

seq1  GTTATCTCATAAATATGCAAATTTTCCTAACTCTTACAACACCTAAAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTCATAAATATGCAAATTTTCCTAACTCTTACAACACCTAAAACC  700

seq1  CAAACCTTTGGACTCATGCATTTCAGATGAGTGATCCTCAACCTACAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTTTGGACTCATGCATTTCAGATGAGTGATCCTCAACCTACAGTC  750

seq1  TGGTAAGTAGGTGAATTAGTAAAGCAAACACCACGGAGCTAGGGAGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGTAGGTGAATTAGTAAAGCAAACACCACGGAGCTAGGGAGAACA  800

seq1  GATGAAGGCAGAGGCTAAGCTGCACTTAGTTCAGCTCTGAGCTACACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGGCAGAGGCTAAGCTGCACTTAGTTCAGCTCTGAGCTACACTTT  850

seq1  GTTCTAGCTGTCCTTCTACCATTTATTATTTACCAACAC-TTTTCAGCAA  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTCTAGCTGTCCTTCTACCATTTATTATTTACCAACACTTTTTCAGCAA  900

seq1  TAACGTGGAAGAGAAAGGAGC-TGTCGTCAGGCACACTGAAAAGTTGAAT  948
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAACGTGGAAGAGAAAGGAGCTTGTCGTCAGGCACACTGAAAAGTTGAAT  950

seq1  TGCAGGTTTCCATGGCAACCAAGTTGCGCTCGGAGATTTTCTAGCCCCGC  998
      ||||||||| ||||||||||||| |||||||||||||||||||||| |||
seq2  TGCAGGTTT-CATGGCAACCAAGGTGCGCTCGGAGATTTTCTAGCCTCGC  999

seq1  ATGTTTTAATGAAAACATTTCCTCAGCCATTATAG-ATGGGCTTGTGTAC  1047
      ||||||  |||||||||||| ||||| |||||||| ||||||||||||||
seq2  ATGTTT--ATGAAAACATTT-CTCAG-CATTATAGAATGGGCTTGTGTAC  1045

seq1  TCGACAAGAAGTGCTTT-ATCTTAACATACCATTATGCTCATAAGTCAGA  1096
      ||||| ||||||||||| ||||||||| |||||||||||||| |||| ||
seq2  TCGAC-AGAAGTGCTTTAATCTTAACA-ACCATTATGCTCAT-AGTC-GA  1091

seq1  TTGATGCCCTGTAGTATTATTTCATCAAATCTCAATTCCTTCTTGTGTTT  1146
       |||||||||||   | |||||||||||||   || ||  ||||||| ||
seq2  -TGATGCCCTGT--GAATATTTCATCAAATTCTAAATC--TCTTGTG-TT  1135

seq1  GCCTCACAGGAACTGGTTCCAATTCTAACACAGTGAAGGCA  1187
      |||||||||||||| | ||||| |||||| ||| |||||||
seq2  GCCTCACAGGAACT-GATCCAA-TCTAAC-CAG-GAAGGCA  1172

seq1: chrX_22394480_22394601
seq2: B6Ng01-137A10.g_158_270

seq1  TTCTCTCTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCCCTCCCC  50
      |||||||||||||| ||||||| ||||||| ||||||| |||        
seq2  TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT--------  42

seq1  CCCCTCTCTCTCTCTGTGTGTGT----GTGTGTGTGTGT-GTGTGTGTGT  95
         |||||||||||||| |||||     | | ||||| | | | ||||||
seq2  ---CTCTCTCTCTCTGTATGTGTAAAAATATATGTGTATGGGGAGTGTGT  89

seq1  GTTGCCTGGGAATATAAATATATATGA  122
       ||      ||||||||||||||||||
seq2  ATT---AAAGAATATAAATATATATGA  113