BAC Information

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BAC

Clone NameB6Ng01-137M12
ChromosomeX (Build37)
Map Location 113,484,917 - 113,616,125
singlet/doubletdoublet
Overlap geneCpxcr1
Upstream geneLOC623913, LOC546363, LOC100039277
Downstream geneEG624153, LOC100039300, EG665045, LOC100039319
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137M12.bB6Ng01-137M12.g
ACCDH937207DH937208
length1,201945
definitionDH937207|Mus musculus domesticus DNA, BAC clone: B6Ng01-137M12, 5' end.DH937208|Mus musculus domesticus DNA, BAC clone: B6Ng01-137M12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,614,879 - 113,616,125)(113,484,917 - 113,485,825)
sequence
gaattcctttaatgtcctatccccttaacttaaatattaactaattccaa
agttaactgtttccctttccaattaccacttcttcctatacaactaattc
tttcaacagtgatttaaaagtacacataacattttactcttttcactttt
atagctatgccttttgtatttaaaatgagcacttgcatacatatagaata
aaaatgaaattcatcttcagttttagcacttagaaatcaccattatcaat
attagaagatttctttcattatttatggcaaagggatgtctctttatatt
aaaattatatttgtaagtgtcttgcccttttaattaacaactacactgga
acaatttcttgtggtaaatcttctgcaattagaataatgagcttgctatg
ttccaagaaatgtttgcagagagtacattatcctgtatttttcattgtct
tttctgaaatctttttttgcctagcatcctttcctgtaaaattggtgatt
tccataaattctattcataaaatttcactgactttccataggtcctgcaa
cacttgtgtatctgcttgtttggtattgtcttccagggcaggaaccaagt
gttgtatatctttcttccatcagtgcttgtccatttcttgtattttcgaa
ctttttttcttctacacgaatacttacttctttagcatgaaaatagaacc
tgtcttaagattattgatgcaagtctaggccttacttaaactattgctat
aaaccttcctttaacaataatcttctttaaataagaactgcacattgatt
acctttagttcttctgcaactgtatatttccctcactgagtggagctaat
gaaatatgttgagtcctatataagaatttccatagatttgtcagtgtttg
ttaagatctacacattctatgaattccggagtatattttgttttttgtta
cattttcctccaaataaagagccatgatcacattcagttaggatttctgt
cttacgagtgtagtatgcatggaactaactgctcacttaattatactggc
ttttctcactcatacattatcctaggtcaattattatcctatatcatgta
ctgatagatcagggacatttctaaagtaatgatttctgattcaagactga
attgactgattctacgggccttggcaatggatacagactcacatggcata
t
gaattctgtcttttttccactggatagttttagcacctttgtcaaatatc
aagaaccataggtgtgtgggctccttactggatctttaattctattccat
tgatccacctgtctgtcactctaccagtaccatgcaggttttatcacaat
tgctctgtagtacagcttgaggacggacatggtgattccaccagagtttc
ttttattgttgagaagagtttttgctatcctaggttttttgttattccag
atgaatttgcaaattaccctttctaacttgctgaaaagttgagttggaat
tttgatggggatatcactgaaattgtagcttactttcggcaagatagcca
tttttactctattaatcctgccaatccatgagttgtatttctaatatgtc
tgtggcttttaatcatgtggtgaggggatttttttttctggatcagtcta
cttgggtctacttggagttctctaagattcatgtatctttatccagatct
ctttctctttctgtaggttgggaaagttttcttctcagatttttttaaaa
atattttctggaccttggaactgggactcttcaattattcctattattct
tcagttgggttttatcatatctctgattgtctggataattgaattggaat
tttttcagaaactttttttatatttaacttttttttcactgatgtattaa
tttctttgttgtgtccttttcccctgagattatctcttccatttcctgta
ttctgttggtggtgcttccttctgttgttcctgtttgcttccctaggttc
tctatctctgaaatttcctgagtttctgctttttttttattgcttctaat
tctactttcacatctttaatcttgcataggtttatttatttcccttcacc
tacttcatcatattttgtgtgtcactctaagcatatattcatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_113614879_113616125
seq2: B6Ng01-137M12.b_48_1248 (reverse)

seq1  ATATGCCATCGTTTGAGTCTGTGAATCAATGTGCAAAGGGCCAGTAGGAA  50
      ||||||||   | |||||||||  ||| || ||| || |||| ||||  |
seq2  ATATGCCA---TGTGAGTCTGT--ATCCAT-TGCCAA-GGCCCGTAG--A  41

seq1  ATCAGATTCATATTCAGTACTTTGAAATCCAGAAAATTCATTTACTTTTA  100
      |||||  ||| |||||||   |||||   ||||||  ||| |||| ||||
seq2  ATCAG--TCA-ATTCAGT--CTTGAA--TCAGAAA--TCA-TTAC-TTTA  80

seq1  GAAAAATTTGTCCCTTGATCTATATCAGTACATGAAATTATAGGATAATA  150
      ||||    |||||| |||||  |||||||||||||   ||||||||||| 
seq2  GAAA----TGTCCC-TGATC--TATCAGTACATGA---TATAGGATAAT-  119

seq1  AATTGAACTTAGGGATATGTAATGAGTGAGAAAAGCCAGGTATAATTAAG  200
      ||||| || ||||   |||| ||||||||||||||||| |||||||||||
seq2  AATTG-ACCTAGGATAATGT-ATGAGTGAGAAAAGCCA-GTATAATTAAG  166

seq1  TGAAGCAGTTAGGTTCCATGCATACTAACACTTCTGTTAAGACAGAAATC  250
      || |||||||| |||||||||||||| |||   ||  |||||||||||||
seq2  TG-AGCAGTTA-GTTCCATGCATACT-ACA---CTCGTAAGACAGAAATC  210

seq1  CTTAACTTGAATTGTGATCATGGCTCTTTTAATTTGGAGGAAAATGTAAC  300
      | |||| |||| |||||||||||||||||  |||||||||||||||||||
seq2  C-TAAC-TGAA-TGTGATCATGGCTCTTT--ATTTGGAGGAAAATGTAAC  255

seq1  AAAAAAACAAAATATACTCCGGAATTCATAGAATGTGTAGATCTTAACAA  350
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAAAACAAAATATACTCCGGAATTCATAGAATGTGTAGATCTTAACAA  304

seq1  ACACTGACAAATCTATGGAAATTCTTATATAGGACTCAACATATTTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGACAAATCTATGGAAATTCTTATATAGGACTCAACATATTTCATT  354

seq1  AGCTCCACTCAGTGAGGGAAATATACAGTTGCAGAAGAACTAAAGGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCACTCAGTGAGGGAAATATACAGTTGCAGAAGAACTAAAGGTAAT  404

seq1  CAATGTGCAGTTCTTATTTAAAGAAGATTATTGTTAAAGGAAGGTTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGCAGTTCTTATTTAAAGAAGATTATTGTTAAAGGAAGGTTTATA  454

seq1  GCAATAGTTTAAGTAAGGCCTAGACTTGCATCAATAATCTTAAGACAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGTTTAAGTAAGGCCTAGACTTGCATCAATAATCTTAAGACAGGT  504

seq1  TCTATTTTCATGCTAAAGAAGTAAGTATTCGTGTAGAAGAAAAAAAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTCATGCTAAAGAAGTAAGTATTCGTGTAGAAGAAAAAAAGTTC  554

seq1  GAAAATACAAGAAATGGACAAGCACTGATGGAAGAAAGATATACAACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACAAGAAATGGACAAGCACTGATGGAAGAAAGATATACAACACT  604

seq1  TGGTTCCTGCCCTGGAAGACAATACCAAACAAGCAGATACACAAGTGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCTGCCCTGGAAGACAATACCAAACAAGCAGATACACAAGTGTTG  654

seq1  CAGGACCTATGGAAAGTCAGTGAAATTTTATGAATAGAATTTATGGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCTATGGAAAGTCAGTGAAATTTTATGAATAGAATTTATGGAAAT  704

seq1  CACCAATTTTACAGGAAAGGATGCTAGGCAAAAAAAGATTTCAGAAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATTTTACAGGAAAGGATGCTAGGCAAAAAAAGATTTCAGAAAAGA  754

seq1  CAATGAAAAATACAGGATAATGTACTCTCTGCAAACATTTCTTGGAACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAAATACAGGATAATGTACTCTCTGCAAACATTTCTTGGAACAT  804

seq1  AGCAAGCTCATTATTCTAATTGCAGAAGATTTACCACAAGAAATTGTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCTCATTATTCTAATTGCAGAAGATTTACCACAAGAAATTGTTCC  854

seq1  AGTGTAGTTGTTAATTAAAAGGGCAAGACACTTACAAATATAATTTTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGTTGTTAATTAAAAGGGCAAGACACTTACAAATATAATTTTAAT  904

seq1  ATAAAGAGACATCCCTTTGCCATAAATAATGAAAGAAATCTTCTAATATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAGACATCCCTTTGCCATAAATAATGAAAGAAATCTTCTAATATT  954

seq1  GATAATGGTGATTTCTAAGTGCTAAAACTGAAGATGAATTTCATTTTTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGGTGATTTCTAAGTGCTAAAACTGAAGATGAATTTCATTTTTAT  1004

seq1  TCTATATGTATGCAAGTGCTCATTTTAAATACAAAAGGCATAGCTATAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATGTATGCAAGTGCTCATTTTAAATACAAAAGGCATAGCTATAAA  1054

seq1  AGTGAAAAGAGTAAAATGTTATGTGTACTTTTAAATCACTGTTGAAAGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAGAGTAAAATGTTATGTGTACTTTTAAATCACTGTTGAAAGAA  1104

seq1  TTAGTTGTATAGGAAGAAGTGGTAATTGGAAAGGGAAACAGTTAACTTTG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGTATAGGAAGAAGTGGTAATTGGAAAGGGAAACAGTTAACTTTG  1154

seq1  GAATTAGTTAATATTTAAGTTAAGGGGATAGGACATTAAAGGAATTC  1247
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGTTAATATTTAAGTTAAGGGGATAGGACATTAAAGGAATTC  1201

seq1: chrX_113484917_113485825
seq2: B6Ng01-137M12.g_68_977

seq1  GAATTCTGTCTTTTTTCCACTGGATAGTTTTAGCACCTTTGTCAAATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTTTTTTCCACTGGATAGTTTTAGCACCTTTGTCAAATATC  50

seq1  AAGAACCATAGGTGTGTGGGCTCCTTACTGGATCTTTAATTCTATTCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCATAGGTGTGTGGGCTCCTTACTGGATCTTTAATTCTATTCCAT  100

seq1  TGATCCACCTGTCTGTCACTCTACCAGTACCATGCAGGTTTTATCACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCACCTGTCTGTCACTCTACCAGTACCATGCAGGTTTTATCACAAT  150

seq1  TGCTCTGTAGTACAGCTTGAGGACGGACATGGTGATTCCACCAGAGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTAGTACAGCTTGAGGACGGACATGGTGATTCCACCAGAGTTTC  200

seq1  TTTTATTGTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAG  250

seq1  ATGAATTTGCAAATTACCCTTTCTAACTTGCTGAAAAGTTGAGTTGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTGCAAATTACCCTTTCTAACTTGCTGAAAAGTTGAGTTGGAAT  300

seq1  TTTGATGGGGATATCACTGAAATTGTAGCTTACTTTCGGCAAGATAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGGGGATATCACTGAAATTGTAGCTTACTTTCGGCAAGATAGCCA  350

seq1  TTTTTACTCTATTAATCCTGCCAATCCATGAGTTGTATTTCTAATATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTCTATTAATCCTGCCAATCCATGAGTTGTATTTCTAATATGTC  400

seq1  TGTGGCTTTTAATCATGTGGTGAGGGGATTTTTTTTTCTGGATCAGTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTTTAATCATGTGGTGAGGGGATTTTTTTTTCTGGATCAGTCTA  450

seq1  CTTGGGTCTACTTGGAGTTCTCTAAGATTCATGTATCTTTATCCAGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTCTACTTGGAGTTCTCTAAGATTCATGTATCTTTATCCAGATCT  500

seq1  CTTTCTCTTTCTGTAGGTTGGGAAAGTTTTCTTCTCAGATTTTTTTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTTTCTGTAGGTTGGGAAAGTTTTCTTCTCAGATTTTTTTAAAA  550

seq1  ATATTTTCTGGACCTTGGAACTGGGACTCTTCAATTATTCCTATTATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTGGACCTTGGAACTGGGACTCTTCAATTATTCCTATTATTCT  600

seq1  TCAGTTGGGTTTTATCATATCTCTGATTGTCTGGATAATTGAATTGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGGGTTTTATCATATCTCTGATTGTCTGGATAATTGAATTGGAAT  650

seq1  TTTTTCAGAAACTTTTTTTATATTTAACTTTTTTTTCACTGATGTATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGAAACTTTTTTTATATTTAACTTTTTTTTCACTGATGTATTAA  700

seq1  TTTCTTTGTTGTGTCCTTTTCCCCTGAGATTATCTCTTCCATTTCCTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTTGTGTCCTTTTCCCCTGAGATTATCTCTTCCATTTCCTGTA  750

seq1  TTCTGTTGGTGGTGCTTCCTTCTGTTGTTCCTGTTTGCTTCCCTAGGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGGTGGTGCTTCCTTCTGTTGTTCCTGTTTGCTTCCCTAGGTTC  800

seq1  TCTATCTCTGAAATTTCCTGAGTTTCTGCTTTTTTTTTATTGCTTCTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTCTGAAATTTCCTGAGTTTCTGCTTTTTTTTTATTGCTTCTAAT  850

seq1  TCTACTTTCACATCTTTAATCTTGCATAGGTTTATTTATTT-CCTTCACC  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTACTTTCACATCTTTAATCTTGCATAGGTTTATTTATTTCCCTTCACC  900

seq1  TACTTCATCA  909
      ||||||||||
seq2  TACTTCATCA  910