BAC Information

Click to search

BAC

Clone NameB6Ng01-137N14
ChromosomeX (Build37)14 (Build37)
Map Location 100,599,551 - 100,600,06765,790,384 - 65,791,476
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneHdac8, Phka1, LOC668331, LOC100042516, EG668339, Dmrtc1b, EG668343, LOC100043105, EG668349, EG382233, Dmrtc1c, EG668360, LOC668357, 1700031F05Rik, EG668369, Dmrtc1a, 1700011M02Rik, 1700018G05Rik, EG331480, EG668382, LOC668387, EG245545, LOC100042610, EG621205, Nap1l2, LOC668217, 4930519F16Rik, LOC100042615, Cdx4, LOC671052, Chic1
Downstream geneTsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430, Rnf12, C77370, Vcp-ps, EG621542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137N14.bB6Ng01-137N14.g
ACCDH937257DH937258
length2581,077
definitionDH937257|Mus musculus domesticus DNA, BAC clone: B6Ng01-137N14, 5' end.DH937258|Mus musculus domesticus DNA, BAC clone: B6Ng01-137N14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,599,551 - 100,600,067)(65,790,384 - 65,791,476)
sequence
gaattccaggacatccagggctagatggagaaactctgtcttcaaaaaaa
gcaggagggctgtcgagatggctcagcaggtaagagcactgactgctctt
ccaaaggtcctgagttcaaatcccagcaatcacatggtggctcacaacca
cccgtaatgatatctgatgccctcttctggtgagtctgaagtcagctaca
gtgtatttgtgtataataataaagaaatctttacacgaaaaaagcaggaa
gaggagga
gaattccactgtgtttgtttggttatgagagaggtctcaggaagcctagg
ctggacttgaactcattgccagccaagaatgagctgggattctcttgttt
ctacctcccacatgctgtgtgtggagctgtgggtggggcttctttatatg
caaggccagcactctttcaacttcaatacatttcccgcctaagtctcccg
actttagctctttaacagaataaacatgactccggggttcacctgagggt
ttttgtgtgagataaagagctataagcaaaggatgcggttgggtccgaag
ccaggctcatgtaaggaatggagtttctggattaggctggcccctttaca
ggaatcagggctcctaaggtttcttaaaccgatgttgttttcttaggggt
tatgtttcttaagaatctagaggtgggggacagggttcctcagagaacag
aggccccgctttggatgacttagaacagacaatgtccacattcaggagat
caaggtgggctgggcaggggtgactgactaagcagaaaggaacagttcaa
gtgtgaaagttctgggccaaatgacaagcttccctccaactgacctgagc
cttttcagagagatgggcggcctgggctgtggctcggatgctgttttcca
ttgaggtgaacctgaagcctgtggcactggctctctgacaagcccagaag
agaaggctcctggccagaggcctggaatgagcacctcccctccagtcagt
cagcagagttgctcattagcaggctccacccacgagcgggctgcaggtgc
ctgcatactttctgctcgcccaccatgtacaggcaagctgatgccctctg
agggtttctggaacaagagacagaaaatgaacctggtaagtttcctcggc
acctgctatctgtcctgctgcaaagcagggctcatttgttgcctggaaaa
cttagaccatatggtgcttgtcgaaggtgatttttgggctaccgcagcag
cagactgtgcacatttagaacccagttctaaccagtactcgaagtactga
accgagagtctcactgcctttctctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_100599551_100600067
seq2: B6Ng01-137N14.b_184_304 (reverse)

seq1  TCCTCCCTCTTCCTGCTTTTTCCATTTTTGATTCTTTGTGAATTTCACAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCTGCACTCCAATCCCACTAATCTTACCATCCCTGCATATCAACCCTCCA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTAGCAACCTCCCCTCCCCCCAAAAAAACTAAAAGTATTTTTAAAGAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTATTTATTATTTATATCTAAGTACACTATAGCTGTCTTTAGACACACCA  200
                                                        
seq2  --------------------------------------------------  0

seq1  GTAGAGGGTGTGAGATCCCATTATAGATGGTTGTAAGTCACCATGTGTAT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TTGAACTCAGGACCTTCATAAGAACAGTCAAGTGCTCTTAACCACTGAGC  300
                                                        
seq2  --------------------------------------------------  0

seq1  CATCTCTCCAGCCCCCTAAAAATATTTTTAAAATTAAAAAAAAAAAAAAA  350
                                                        
seq2  --------------------------------------------------  0

seq1  CCTTGCTGTGGAATCTGCAGTGTGTCACAGTGTGTCTCACACTATACCCT  400
                                                     |||
seq2  ----------------------------------------------TCCT  4

seq1  TTTGTCCACACATCTTTTTT-TTCTTAAGATTTATTTAT--TTATATATA  447
        | | |   |  |||||||  | | ||||||| |||||  ||||| | |
seq2  CCTCTTC---CTGCTTTTTTCGTGTAAAGATTTCTTTATTATTATACACA  51

seq1  AATACACTGTAGCTGTCTTCAGACACCCCTGAAGAGGGCATCAGATCTCA  497
      ||||||||||||||| |||||||| | || |||||||||||||||| |||
seq2  AATACACTGTAGCTGACTTCAGACTCACCAGAAGAGGGCATCAGATATCA  101

seq1  TTACAGATGGTTGTGAGCCA  517
      |||| | |||||||||||||
seq2  TTACGGGTGGTTGTGAGCCA  121

seq1: chr14_65790384_65791476
seq2: B6Ng01-137N14.g_70_1146

seq1  GAATTCCACTGTGTTTGTTTGGTTATGAGAGAGGTCTCAGGAAGCCTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGTGTTTGTTTGGTTATGAGAGAGGTCTCAGGAAGCCTAGG  50

seq1  CTGGACTTGAACTCATTGCCAGCCAAGAATGAGCTGGGATTCTCTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTTGAACTCATTGCCAGCCAAGAATGAGCTGGGATTCTCTTGTTT  100

seq1  CTACCTCCCACATGCTGTGTGTGGAGCTGTGGGTGGGGCTTCTTTATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCCCACATGCTGTGTGTGGAGCTGTGGGTGGGGCTTCTTTATATG  150

seq1  CAAGGCCAGCACTCTTTCAACTTCAATACATTTCCCGCCTAAGTCTCCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCAGCACTCTTTCAACTTCAATACATTTCCCGCCTAAGTCTCCCG  200

seq1  ACTTTAGCTCTTTAACAGAATAAACATGACTCCGGGGTTCACCTGAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGCTCTTTAACAGAATAAACATGACTCCGGGGTTCACCTGAGGGT  250

seq1  TTTTGTGTGAGATAAAGAGCTATAAGCAAAGGATGCGGTTGGGTCCGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTGAGATAAAGAGCTATAAGCAAAGGATGCGGTTGGGTCCGAAG  300

seq1  CCAGGCTCATGTAAGGAATGGAGTTTCTGGATTAGGCTGGCCCCTTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTCATGTAAGGAATGGAGTTTCTGGATTAGGCTGGCCCCTTTACA  350

seq1  GGAATCAGGGCTCCTAAGGTTTCTTAAACCGATGTTGTTTTCTTAGGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAGGGCTCCTAAGGTTTCTTAAACCGATGTTGTTTTCTTAGGGGT  400

seq1  TATGTTTCTTAAGAATCTAGAGGTGGGGGACAGGGTTCCTCAGAGAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCTTAAGAATCTAGAGGTGGGGGACAGGGTTCCTCAGAGAACAG  450

seq1  AGGCCCCGCTTTGGATGACTTAGAACAGACAATGTCCACATTCAGGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCGCTTTGGATGACTTAGAACAGACAATGTCCACATTCAGGAGAT  500

seq1  CAAGGTGGGCTGGGCAGGGGTGACTGACTAAGCAGAAAGGAACAGTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGGGCTGGGCAGGGGTGACTGACTAAGCAGAAAGGAACAGTTCAA  550

seq1  GTGTGAAAGTTCTGGGCCAAATGACAAGCTTCCCTCCAACTGACCTGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAAGTTCTGGGCCAAATGACAAGCTTCCCTCCAACTGACCTGAGC  600

seq1  CTTTTCAGAGAGATGGGCGGCCTGGGCTGTGGCTCGGATGCTGTTTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGAGAGATGGGCGGCCTGGGCTGTGGCTCGGATGCTGTTTTCCA  650

seq1  TTGAGGTGAACCTGAAGCCTGTGGCACTGGCTCTCTGACAAGCCCAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTGAACCTGAAGCCTGTGGCACTGGCTCTCTGACAAGCCCAGAAG  700

seq1  AGAAGGCTCCTGGCCAGAGGCCTGGAATGAGCACCTCCCCTCCAGTCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTCCTGGCCAGAGGCCTGGAATGAGCACCTCCCCTCCAGTCAGT  750

seq1  CAGCAGAGTTGCTCATTAGCAGGCTCCACCCACGAGCGGGCTGCAGGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGTTGCTCATTAGCAGGCTCCACCCACGAGCGGGCTGCAGGTGC  800

seq1  CTGCATACTTTCTGCTCGCCCACCATGTACAGGCAAGCTGATGCCCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATACTTTCTGCTCGCCCACCATGTACAGGCAAGCTGATGCCCTCTG  850

seq1  AGGGTTTCTGGAACAAAGAAGACAAGAAAATGAACCTGGTAAGTTTCCTC  900
      ||||||||||||||||   |||| ||||||||||||||||||||||||||
seq2  AGGGTTTCTGGAACAA--GAGAC-AGAAAATGAACCTGGTAAGTTTCCTC  897

seq1  GGCACCTGCTTATCTGTCCTGCTGCAAAGCAGGGCTCATTTGTTGCCTGG  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTGC-TATCTGTCCTGCTGCAAAGCAGGGCTCATTTGTTGCCTGG  946

seq1  AAAACTTAAGACCATATGGTGCTTGTCGAAGGGTGATCTTTGGGCCACCG  1000
      ||||||| |||||||||||||||||||||| |||||| ||||||| ||| 
seq2  AAAACTT-AGACCATATGGTGCTTGTCGAA-GGTGATTTTTGGGCTACC-  993

seq1  GCAGCAGCAGACTCGTGCACATTTAGAAACCCAGTTTCTAACCCAGTACT  1050
      ||||||||||||| |||||||||||| ||||||| |||||| ||||||| 
seq2  GCAGCAGCAGACT-GTGCACATTTAG-AACCCAG-TTCTAA-CCAGTAC-  1038

seq1  TCAGAGTACCTGAACCGAGAGTCTCCAACCTGCTTTTCTCTAA  1093
      ||  |||| ||||||||||||||||    |||| |||||||||
seq2  TCGAAGTA-CTGAACCGAGAGTCTC---ACTGCCTTTCTCTAA  1077