BAC Information

Click to search

BAC

Clone NameB6Ng01-138I08
ChromosomeX (Build37)
Map Location 48,544,550 - 48,665,302
singlet/doubletdoublet
Overlap geneMbnl3, LOC665866, LOC385356
Upstream geneEG665816, Olfr1324, LOC100041788, 6720401G13Rik, 2610018G03Rik, LOC100040422, Rap2c, LOC385355
Downstream geneHs6st2, Usp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495, Gpc4, Gpc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138I08.bB6Ng01-138I08.g
ACCDH937759DH937760
length998920
definitionDH937759|Mus musculus domesticus DNA, BAC clone: B6Ng01-138I08, 5' end.DH937760|Mus musculus domesticus DNA, BAC clone: B6Ng01-138I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,544,550 - 48,545,466)(48,664,364 - 48,665,302)
sequence
gaattcataggcattacatctaagaaagcgtctttcaaaacgaaatcatg
aaattttcaggtaaattaatggaaggggaaagattatactgagggaggca
actaacacccagaaaaacaaatgttgactgttcattctcatctgtgcctc
caaactccgaatcttcagatgtgagtttatgacttggagtaaccacagaa
ccaggaaagtaaaaagggacgggagaaggtagcactagacatgagaatat
caggatacaagtgatttgaagggaaaactggaaacattagaaggagggct
ttaatttgggaagcagaggaggcgaactctgaaggaaaggggggacgaga
ataaaataacggtaagggtgtcttaaaggaatagtctaaagttacataca
atatacagtctatgtgtctacatatatagtgttaatgacattttcccacc
tgtactaacagtgggctcttctatagccatactatgcatatacactttgg
cagtaaccaacaattctgtatttggacttaaggcctgctcaataaggagg
aaatgatgtttgttacatagataatgacctttgggtagtgaggtcatggt
tcttagagaagaacctacaaccaccactgtactaaaccagcataatccct
ccctacattctatacccacacttaggcccagcaatcaggcctcatcaaag
ggacggactttacagcagacaaaggcctttatagaaaaggacaagcgacc
aaaatgcagacagcactgattaataaatctacaacatgactcctgcaccc
aagggtcaggggacatcgtggagagggacgaaaagaccatagaggccaga
ggaatggcaaggcttctgtaagactgcatcttctagaaatgacatggggc
tcacacccaggaagtctcaacatatgacacaacaagcatcatccctgcaa
gcatccacataaaagtgactatatacactgtgctgactgcatgtatgt
gaattcaacatggactccatctagacctggacattttttgttttgttgtt
gttttcagctgaaaaattgtttattaattactgtagcaatttcattgttc
ataatagatccatttaaattgttcatattctcttggtttaattttgttag
cccccatgtgtcaaggtatgtattaatttcttatagattttctaatttat
gagagttctttctaattaaaaattgaatcatcttattgtatctatgtatg
gtatgtcttcttagtaagcacatatatttatgtgtttatatctaggaact
gtttagaaaaagaattcaaatgagtttgaaatatgaatatttattgttaa
aaagtggtaagtgtgttgtggtcacaccttcatgctctaattctttcaat
gtctgtgtatttgaaaatttttacagtacaacattaaaaggggaggcaga
atagatggcagagtgattaagagcatacatagactgctcttgcagaaggc
cagagtttcatttccagaactcatattgggcagcacacatagcctataac
tgcagttagaggggaactgatctgatgccttcttctagcctccaagggca
ccaggcatctgcatctgcattgcatttttgcacatgtgagctctctctct
ctctctctctctctctctctctctctctctctctctctatctatctctat
ctctctctctctcacacacacacacacactctacacacacacacactcac
actcagacgtactcagtctcatacctacacatacactcacagggtttcac
acgaacacaaccagcaccaccgcatcactgcacaccattaaaaaaagata
atgttgaagaaaaccacaacacacaaagtgtgtaggtcacaagctgattg
tctaatgagaaattttactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_48544550_48545466
seq2: B6Ng01-138I08.b_41_957

seq1  GAATTCATAGGCATTACATCTAAGAAAGCGTCTTTCAAAACGAAATCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGCATTACATCTAAGAAAGCGTCTTTCAAAACGAAATCATG  50

seq1  AAATTTTCAGGTAAATTAATGGAAGGGGAAAGATTATACTGAGGGAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCAGGTAAATTAATGGAAGGGGAAAGATTATACTGAGGGAGGCA  100

seq1  ACTAACACCCAGAAAAACAAATGTTGACTGTTCATTCTCATCTGTGCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACACCCAGAAAAACAAATGTTGACTGTTCATTCTCATCTGTGCCTC  150

seq1  CAAACTCCGAATCTTCAGATGTGAGTTTATGACTTGGAGTAACCACAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCCGAATCTTCAGATGTGAGTTTATGACTTGGAGTAACCACAGAA  200

seq1  CCAGGAAAGTAAAAAGGGACGGGAGAAGGTAGCACTAGACATGAGAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAAGTAAAAAGGGACGGGAGAAGGTAGCACTAGACATGAGAATAT  250

seq1  CAGGATACAAGTGATTTGAAGGGAAAACTGGAAACATTAGAAGGAGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATACAAGTGATTTGAAGGGAAAACTGGAAACATTAGAAGGAGGGCT  300

seq1  TTAATTTGGGAAGCAGAGGAGGCGAACTCTGAAGGAAAGGGGGGACGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGGGAAGCAGAGGAGGCGAACTCTGAAGGAAAGGGGGGACGAGA  350

seq1  ATAAAATAACGGTAAGGGTGTCTTAAAGGAATAGTCTAAAGTTACATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAACGGTAAGGGTGTCTTAAAGGAATAGTCTAAAGTTACATACA  400

seq1  ATATACAGTCTATGTGTCTACATATATAGTGTTAATGACATTTTCCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGTCTATGTGTCTACATATATAGTGTTAATGACATTTTCCCACC  450

seq1  TGTACTAACAGTGGGCTCTTCTATAGCCATACTATGCATATACACTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTAACAGTGGGCTCTTCTATAGCCATACTATGCATATACACTTTGG  500

seq1  CAGTAACCAACAATTCTGTATTTGGACTTAAGGCCTGCTCAATAAGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACCAACAATTCTGTATTTGGACTTAAGGCCTGCTCAATAAGGAGG  550

seq1  AAATGATGTTTGTTACATAGATAATGACCTTTGGGTAGTGAGGTCATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATGTTTGTTACATAGATAATGACCTTTGGGTAGTGAGGTCATGGT  600

seq1  TCTTAGAGAAGAACCTACAACCACCACTGTACTAAACCAGCATAATCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGAAGAACCTACAACCACCACTGTACTAAACCAGCATAATCCCT  650

seq1  CCCTACATTCTATACCCACACTTAGGCCCAGCAATCAGGCCTCATCAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACATTCTATACCCACACTTAGGCCCAGCAATCAGGCCTCATCAAAG  700

seq1  GGACGGACTTTACAGCAGACAAAGGCCTTTATAGAAAAGGACAAGCGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGACTTTACAGCAGACAAAGGCCTTTATAGAAAAGGACAAGCGACC  750

seq1  AAAATGCAGACAGCACTGATTAATAAATCTACAACATGACTCCTGCACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCAGACAGCACTGATTAATAAATCTACAACATGACTCCTGCACCC  800

seq1  AAGGGTCAGGGGACATCGTGGAGAGGGACGAAAAGACCATAGAGGCCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCAGGGGACATCGTGGAGAGGGACGAAAAGACCATAGAGGCCAGA  850

seq1  GGAATGGCAAGGCTTCTGTAAGACTGCATCTTCTAGAAATGACATGGGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGCAAGGCTTCTGTAAGACTGCATCTTCTAGAAATGACATGGGGC  900

seq1  TCACACCCAGGAAGTCT  917
      |||||||||||||||||
seq2  TCACACCCAGGAAGTCT  917

seq1: chrX_48664364_48665302
seq2: B6Ng01-138I08.g_65_984 (reverse)

seq1  AAGTAAAATCTACTACAATAAAGACAAATCAGCCTGTCGACCTACACACC  50
      ||||||||| | || || |  |||| ||||||| ||| |||||||||| |
seq2  AAGTAAAAT-TTCT-CATT--AGAC-AATCAGCTTGT-GACCTACACA-C  43

seq1  TTTGTGGTTTTAGTGGTTTTTCTTTCAACATTATCTTTTCTTTAAGTGGT  100
      ||||||  | | ||||||||   |||||||||||||||| ||||| ||||
seq2  TTTGTG--TGTTGTGGTTTT--CTTCAACATTATCTTTT-TTTAA-TGGT  87

seq1  GGTGCTGGTGATGCTGGTGGTGCTGGTGTGTGTTCGTGTGTGAGCCCTGT  150
       ||||  ||||||| |||||||||||| ||||||||||||  | ||||||
seq2  -GTGC-AGTGATGC-GGTGGTGCTGGT-TGTGTTCGTGTG-AAACCCTGT  132

seq1  GAGTGTATGTGTATGTAAGAGACTGAGTACGTCTGAGTGTGAGTGTGTGT  200
      ||||||||||||| ||| ||||||||||||||||||||||||||||||||
seq2  GAGTGTATGTGTAGGTATGAGACTGAGTACGTCTGAGTGTGAGTGTGTGT  182

seq1  GTGTGTGTGAGTGTGTGTGTGTGAGAGAGAGAGAGAGAGATAGAGATAGA  250
      ||||||  ||||||||||||||| | ||||||||||||||||||||||||
seq2  GTGTGT-AGAGTGTGTGTGTGTGTGTGAGAGAGAGAGAGATAGAGATAGA  231

seq1  TAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGC  281

seq1  TCACATGTGCAAAAATGCAATGCAGATGCAGATGCCTGGTGCCCTTGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTGCAAAAATGCAATGCAGATGCAGATGCCTGGTGCCCTTGGAG  331

seq1  GCTAGAAGAAGGCATCAGATCAGTTCCCCTCTAACTGCAGTTATAGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAGAAGGCATCAGATCAGTTCCCCTCTAACTGCAGTTATAGGCTA  381

seq1  TGTGTGCTGCCCAATATGAGTTCTGGAAATGAAACTCTGGCCTTCTGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTGCCCAATATGAGTTCTGGAAATGAAACTCTGGCCTTCTGCAA  431

seq1  GAGCAGTCTATGTATGCTCTTAATCACTCTGCCATCTATTCTGCCTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCTATGTATGCTCTTAATCACTCTGCCATCTATTCTGCCTCCCC  481

seq1  TTTTAATGTTGTACTGTAAAAATTTTCAAATACACAGACATTGAAAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGTTGTACTGTAAAAATTTTCAAATACACAGACATTGAAAGAAT  531

seq1  TAGAGCATGAAGGTGTGACCACAACACACTTACCACTTTTTAACAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCATGAAGGTGTGACCACAACACACTTACCACTTTTTAACAATAAA  581

seq1  TATTCATATTTCAAACTCATTTGAATTCTTTTTCTAAACAGTTCCTAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATATTTCAAACTCATTTGAATTCTTTTTCTAAACAGTTCCTAGAT  631

seq1  ATAAACACATAAATATATGTGCTTACTAAGAAGACATACCATACATAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACATAAATATATGTGCTTACTAAGAAGACATACCATACATAGAT  681

seq1  ACAATAAGATGATTCAATTTTTAATTAGAAAGAACTCTCATAAATTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAGATGATTCAATTTTTAATTAGAAAGAACTCTCATAAATTAGAA  731

seq1  AATCTATAAGAAATTAATACATACCTTGACACATGGGGGCTAACAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATAAGAAATTAATACATACCTTGACACATGGGGGCTAACAAAATT  781

seq1  AAACCAAGAGAATATGAACAATTTAAATGGATCTATTATGAACAATGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGAGAATATGAACAATTTAAATGGATCTATTATGAACAATGAAA  831

seq1  TTGCTACAGTAATTAATAAACAATTTTTCAGCTGAAAACAACAACAAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTACAGTAATTAATAAACAATTTTTCAGCTGAAAACAACAACAAAAC  881

seq1  AAAAAATGTCCAGGTCTAGATGGAGTCCATGTTGAATTC  939
      |||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGTCCAGGTCTAGATGGAGTCCATGTTGAATTC  920