BAC Information

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BAC

Clone NameB6Ng01-138P09
ChromosomeX (Build37)
Map Location 126,460,332 - 126,565,306
singlet/doubletdoublet
Overlap geneDiap2
Upstream geneLOC100040550, LOC100040562, LOC100040570, LOC669120
Downstream geneLOC100040092, LOC665773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138P09.bB6Ng01-138P09.g
ACCDH938073DH938074
length9741,096
definitionDH938073|Mus musculus domesticus DNA, BAC clone: B6Ng01-138P09, 5' end.DH938074|Mus musculus domesticus DNA, BAC clone: B6Ng01-138P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,564,322 - 126,565,306)(126,460,332 - 126,461,449)
sequence
gaattcactgaacatgtgtaaatttgtttgagcaaatggtatttctcaat
tacaaactacttacaaaaatatagaatcacaacttagaagaaatgctata
aaattctgaagatgttaatgttgagaataaaaaaattaaacaaagtaata
taagatatctgactacttattgttctctctgatgaattagttttttgaat
agctataaagtgaccaagtacataaagatccagcgtcctcactaaaactc
tttatctaattctttttaatattttcaattcttatttatttcagttaatg
aagtaagtcagttatatattaacataatggataatgtttaaaaggcagtt
ttaatgtttaatcagcagtttttcatattttggtacaagtatttgatatt
tctaaaatgatatatattataaataatatatatcattttataaattatat
atagaattctaagttttataaattatacatattataaaagtatatatata
tatatatatatatatatatatatatatatatatatatatgtatatatata
cctacatctggaccagagacatgggtaatatacaacgaaaaagctcctaa
tatgtactaaatgagaaaattattctcaatgtaaatttttatgttttata
atcttttattttaaaagtaaatagtgatttcttgcattataaaagttaga
atcatctacctattattataaatagcagattcacaaacactgccccatga
ataggaacctagttcttcaaagacaacactaatttttgatattacccaat
gtgtctataagattaattaaatgcatttgtagtgctataaagtaatgcag
aatttctaaaaaagtggggatgtatcaggatgcataaatgattgtctctg
aaaattcggaattaacaaacacccagattatatgatggacgttgctcaat
gatcaatctagaactaaccttttt
gaattctttgtttagctctgagtccagctttctctgtgatcctttgcttg
tgggctcctgtgaacctgagattctaggtgtgtcagagttcttggcagta
aagttcctctgagaccctgaaatgttggtgtgaccagctccttttatcct
atgatcctgttgtcaaagatcctgggcgtggttcagtgcctggaagtgat
gtctcctttgaatagggtggagctgtctggtcagtggtcctaagattgca
tggaggtggagagtcctctaggaaccttgggggttgtctgccgactctgg
gcccaaggtgacctgatgctggtgccaactggaagggacttgtcaccctg
gtcaggccaggttttctcactattcttttttgttgaacattggaaatcat
ttatcatattgtctgctagttgaatgtattgttttggaattattagcaag
taatagtaattcacatgttgattccactattcactctcacgacatttttt
tttccttccaaatgaacctagttgtcaaaaatatacagttgtagaatatt
tgattttgaacagcaagaaccagttctataaagattaaaatttcagtccc
gtgactatacatttttgaggaagcactatgaaggctactagataaatatg
aattaacaaacagttctcttaggattcaagggacatgttagttgcatact
gtgagtgttcatattatatgcatgatgctggacttttcagtttgtgagat
tacaacagacttgaaattacatgaaattatttaactgttatatttaattc
taatccttgaactatctttcaatttggaaagttcatttttcccatcatag
ttttaaatctgagccctgtgtgtatgatctggaatcatctttgacagtat
aacttcatcttttttttattaatcatttttattgttcccgatcatgtatc
cccctactcgtctaccctcgtgtgcctcccactgcatgcccctccccttg
tttctagagaagtacttcatcttatcgcccttcttcattttgatcagtca
cagagcttttcattcatgttgaacttggttcgactgttttgaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_126564322_126565306
seq2: B6Ng01-138P09.b_47_1020 (reverse)

seq1  AAAAAGGTTAGTTCTCAGATTTGATCATTGAGCCATCGTTCCATCACATA  50
      ||||||||||||||| ||| |||||||||||| || || ||||||| |||
seq2  AAAAAGGTTAGTTCT-AGA-TTGATCATTGAG-CAACG-TCCATCATATA  46

seq1  ATATCTTGGTGTTTTGTTTACTTCCAGATTTTTCAGGAACAATCACTTTA  100
        |||| |||||||   ||| |||| || |||||||  ||||||| ||||
seq2  --ATCTGGGTGTTT--GTTAATTCC-GAATTTTCAGAGACAATCA-TTTA  90

seq1  TGCTATCCTTGAAACAT-CCCACTATTTTTAGAACTACTGCATTACTTTA  149
      ||| |||| ||| |||| |||||| ||||||||| | |||||||||||||
seq2  TGC-ATCC-TGATACATCCCCACT-TTTTTAGAAATTCTGCATTACTTTA  137

seq1  TAGCACTACAAATGCATTTTAATTTAATCTTATAGACACATTGGGTAATA  199
      |||||||||||||||||||  | |||||||||||||||||||||||||||
seq2  TAGCACTACAAATGCATTT--AATTAATCTTATAGACACATTGGGTAATA  185

seq1  TC-AAAATTAGTGTTGTCTTTGAAGAACTAGGTTCCTATTCATGGGGCAG  248
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATTAGTGTTGTCTTTGAAGAACTAGGTTCCTATTCATGGGGCAG  235

seq1  TGTTTGTGAATCTGCTATTTATAATAATAGGTAGATGATTCTAACTTTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGAATCTGCTATTTATAATAATAGGTAGATGATTCTAACTTTTA  285

seq1  TAATGCAAGAAATCACTATTTACTTTTAAATTAAAAGATTATAAAACATA  348
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAATGCAAGAAATCACTATTTACTTTTAAAATAAAAGATTATAAAACATA  335

seq1  AAAATTTAC-CTGAGAATAATTTTCTCATTTAGTACATATTAGGAGC-TT  396
      |||||||||  |||||||||||||||||||||||||||||||||||| ||
seq2  AAAATTTACATTGAGAATAATTTTCTCATTTAGTACATATTAGGAGCTTT  385

seq1  TTCGTTGTATATTACCCATGTCTCTGGTCCAGATGTAGGTA-ATAGAAAA  445
      ||||||||||||||||||||||||||||||||||||||||| |||  | |
seq2  TTCGTTGTATATTACCCATGTCTCTGGTCCAGATGTAGGTATATA-TATA  434

seq1  CATATATATATATATATATATATATATATATATATATATATATATATATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATATATATATATATATATATATATATATATATATATATATATA  484

seq1  CTTTTATAATATGTATAATTTATAAAACTTAGAATTCTATATATAATTTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATAATATGTATAATTTATAAAACTTAGAATTCTATATATAATTTA  534

seq1  TAAAATGATATATATTATTTATAATATATATCATTTTAGAAATATCAAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGATATATATTATTTATAATATATATCATTTTAGAAATATCAAAT  584

seq1  ACTTGTACCAAAATATGAAAAACTGCTGATTAAACATTAAAACTGCCTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTACCAAAATATGAAAAACTGCTGATTAAACATTAAAACTGCCTTT  634

seq1  TAAACATTATCCATTATGTTAATATATAACTGACTTACTTCATTAACTGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTATCCATTATGTTAATATATAACTGACTTACTTCATTAACTGA  684

seq1  AATAAATAAGAATTGAAAATATTAAAAAGAATTAGATAAAGAGTTTTAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAGAATTGAAAATATTAAAAAGAATTAGATAAAGAGTTTTAGT  734

seq1  GAGGACGCTGGATCTTTATGTACTTGGTCACTTTATAGCTATTCAAAAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACGCTGGATCTTTATGTACTTGGTCACTTTATAGCTATTCAAAAAA  784

seq1  CTAATTCATCAGAGAGAACAATAAGTAGTCAGATATCTTATATTACTTTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCATCAGAGAGAACAATAAGTAGTCAGATATCTTATATTACTTTG  834

seq1  TTTAATTTTTTTATTCTCAACATTAACATCTTCAGAATTTTATAGCATTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTTTTATTCTCAACATTAACATCTTCAGAATTTTATAGCATTT  884

seq1  CTTCTAAGTTGTGATTCTATATTTTTGTAAGTAGTTTGTAATTGAGAAAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAGTTGTGATTCTATATTTTTGTAAGTAGTTTGTAATTGAGAAAT  934

seq1  ACCATTTGCTCAAACAAATTTACACATGTTCAGTGAATTC  985
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGCTCAAACAAATTTACACATGTTCAGTGAATTC  974

seq1: chrX_126460332_126461449
seq2: B6Ng01-138P09.g_68_1163

seq1  GAATTCTTTGTTTAGCTCTGAGTCCAGCTTTCTCTGTGATCCTTTGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGTCCAGCTTTCTCTGTGATCCTTTGCTTG  50

seq1  TGGGCTCCTGTGAACCTGAGATTCTAGGTGTGTCAGAGTTCTTGGCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCCTGTGAACCTGAGATTCTAGGTGTGTCAGAGTTCTTGGCAGTA  100

seq1  AAGTTCCTCTGAGACCCTGAAATGTTGGTGTGACCAGCTCCTTTTATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCTCTGAGACCCTGAAATGTTGGTGTGACCAGCTCCTTTTATCCT  150

seq1  ATGATCCTGTTGTCAAAGATCCTGGGCGTGGTTCAGTGCCTGGAAGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCTGTTGTCAAAGATCCTGGGCGTGGTTCAGTGCCTGGAAGTGAT  200

seq1  GTCTCCTTTGAATAGGGTGGAGCTGTCTGGTCAGTGGTCCTAAGATTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTTTGAATAGGGTGGAGCTGTCTGGTCAGTGGTCCTAAGATTGCA  250

seq1  TGGAGGTGGAGAGTCCTCTAGGAACCTTGGGGGTTGTCTGCCGACTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTGGAGAGTCCTCTAGGAACCTTGGGGGTTGTCTGCCGACTCTGG  300

seq1  GCCCAAGGTGACCTGATGCTGGTGCCAACTGGAAGGGACTTGTCACCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGGTGACCTGATGCTGGTGCCAACTGGAAGGGACTTGTCACCCTG  350

seq1  GTCAGGCCAGGTTTTCTCACTATTCTTTTTTGTTGAACATTGGAAATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCCAGGTTTTCTCACTATTCTTTTTTGTTGAACATTGGAAATCAT  400

seq1  TTATCATATTGTCTGCTAGTTGAATGTATTGTTTTGGAATTATTAGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATATTGTCTGCTAGTTGAATGTATTGTTTTGGAATTATTAGCAAG  450

seq1  TAATAGTAATTCACATGTTGATTCCACTATTCACTCTCACGACATTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTAATTCACATGTTGATTCCACTATTCACTCTCACGACATTTTTT  500

seq1  TTTCCTTCCAAATGAACCTAGTTGTCAAAAATATACAGTTGTAGAATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCCAAATGAACCTAGTTGTCAAAAATATACAGTTGTAGAATATT  550

seq1  TGATTTTGAACAGCAAGAACCAGTTCTATAAAGATTAAAATTTCAGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGAACAGCAAGAACCAGTTCTATAAAGATTAAAATTTCAGTCCC  600

seq1  GTGACTATACATTTTTGAGGAAGCACTATGAAGGCTACTAGATAAATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTATACATTTTTGAGGAAGCACTATGAAGGCTACTAGATAAATATG  650

seq1  AATTAACAAACAGTTCTCTTAGGATTCAAGGGACATGTTAGTTGCATACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACAAACAGTTCTCTTAGGATTCAAGGGACATGTTAGTTGCATACT  700

seq1  GTGAGTGTTCATATTATATGCATGATGCTGGACTTTTCAGTTTGTGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTTCATATTATATGCATGATGCTGGACTTTTCAGTTTGTGAGAT  750

seq1  TACAACAGACTTGAAATTACATGAAATTATTTAACTGTTATATTTAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAGACTTGAAATTACATGAAATTATTTAACTGTTATATTTAATTC  800

seq1  TAATCCTTGAACTATCTTTCAATTTGGAAAGTTCATTTTTCCCATCATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTTGAACTATCTTTCAATTTGGAAAGTTCATTTTTCCCATCATAG  850

seq1  TTTTAAATCTGAGCCCTGTGTGTATGATCTGGAATCATCTTTGACAGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATCTGAGCCCTGTGTGTATGATCTGGAATCATCTTTGACAGTAT  900

seq1  -ACTTCATCTTTTTTTTTATTAATCATTTTATTTGTTTCCCGATCAATGT  949
       |||||||| ||||||||||||||||||||  ||| ||||||||| ||| 
seq2  AACTTCATC-TTTTTTTTATTAATCATTTTTATTG-TTCCCGATC-ATG-  946

seq1  TATCCCCCTACCTCGTCTACCCTCCGTGTGCCTCCCACTGCATGCCCCTC  999
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  TATCCCCCTA-CTCGTCTACCCT-CGTGTGCCTCCCACTGCATGCCCCTC  994

seq1  CCCTTTGTTTCTAAGAG-AGTACTTCATCTTATTCGCCCTTCTTTTCATT  1048
      ||| |||||||| |||| |||||||||||||| |||||||||  |||| |
seq2  CCC-TTGTTTCT-AGAGAAGTACTTCATCTTA-TCGCCCTTC--TTCA-T  1038

seq1  TTTGATCAGTCACAGAGCTTTTTCATTTCATTGTTGAACTTTGGTACAGA  1098
      |||||||||||||||||| |||||| |||| |||||||| ||||| | ||
seq2  TTTGATCAGTCACAGAGC-TTTTCA-TTCA-TGTTGAAC-TTGGTTC-GA  1083

seq1  CCTTGGTCCTTTTTGAAAGA  1118
      |  ||     ||||||||||
seq2  C--TG-----TTTTGAAAGA  1096