BAC Information

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BAC

Clone NameB6Ng01-139H23
ChromosomeX (Build37)
Map Location 143,083,475 - 143,222,712
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC623697, LOC623731, LOC237096, LOC100039558, EG666730
Downstream geneEG245663, Htr2c, Il13ra2, V1rb10, Lrch2, LOC100039462, LOC666789, LOC434863
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139H23.bB6Ng01-139H23.g
ACCDH938464DH938465
length1,1511,105
definitionDH938464|Mus musculus domesticus DNA, BAC clone: B6Ng01-139H23, 5' end.DH938465|Mus musculus domesticus DNA, BAC clone: B6Ng01-139H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,221,552 - 143,222,712)(143,083,475 - 143,084,592)
sequence
gaattccattagtcccacaatcttcctctccccaaaactcccctggactc
ccctctccattattgcacaaccctcttgaattttcctcactcatcattat
atattggtatataatacttaataaacatcgtgagccgaatttgtaaatgg
gaacagaattacaattacagcatttgtttcttagtccattggcagttgga
aaagaacataatttactcttatggagcaatataattgagccactagtgta
tcttttactgtaagttattagtggtaaatccttggctatgtgttttcttt
gaaaaatattaataatatttctcttatgtttatctgtcacttttgagatg
tcacacatggaatctttgatatataatatattgcattcatttaagggtta
acatatattcatctgatcatattattttatgaaagtgaatgcatctgtaa
ccttatcattcattctatctggtaaaaaagtatttataaaacacatgagt
catgaaagaggacatagagctagttgttttcctagttttagctctataat
tgattttttttctgtaaaactttggtggataaaggtataaacataaaatt
gattgaaaaactataaaatctgtgatgctccacatagtcaaaattgctat
tttgaccatatagttcattgaaatggatagactttggttgtagctaatat
caatgtggacatactttttaaaaatttggtatgaaaataggttcatatat
ctttcatatgttaacataatattcataaattataactatatagtttgttg
aactttagcaaactgaacaaatatgtgacattgatatctaagctaaagga
gaataatcttaccccaagggttaggtcatgtttccatccctttactatgt
accaagagtggttgcttttggtaaatgaattaatgcagaatatacttccc
tgtacattcaactacattttgttcaaactacatttgtttgaaaattcata
ttattgcatatagtgtacaggattcatgaatactgctttaatttttccta
tggagtatactatacttttatcccattactgataaaatttctaaggtttc
agttgggacaacctgtggaactgcatgacttcatatagaaattttctgct
g
gaattcattagctgaatgtaaggtaatagtattaatggaaggttctttaa
tgaggcatagaaaaggataacctaatgagagttgataattttcacttgga
tgtggtatgttggagtcatgacaaaattttataaaggcaaaatggaatat
aacggccttggagtcaaagctgggttggttatattattgatgtaagaatc
ctaaaggaacagatggcactgtaaaactcagcctttacttttgcttttgc
ccttcatgccaaaaataaggggtaggaggagtgattcctgggccgtcaag
cttaggctgagactgcagtattcatttgcttaaatataagtcaaagtggc
agttccagtttctcagccatcaagtagtctttatgtgatcacacagtagt
aatccatttctcacactctgtggaaaagcaatgtaacgtgaaatcccctt
cacaattcatttttaggatgacattgaccactgaggtatcaactccaaaa
tttgtttttgtgcaaactagaaaagttcccattttcttcaacagttttca
ttgctgaagtttaacttggggttatcattctagattggcctagcaacttc
atgtaagctttctgttaagtgaaggttatgaaatggtggagagaaatttc
ctaaaggatactgatctgaaatataaattcctgtaagtttctattgcaaa
tggaaatgtattacaccagggaagaaagataattgtcttttcatcaggct
cacatccttttatcactatcacaatatgagacattacaatattactaatt
tggcactttaagtgatagagttaagctaatagaaagtttaacacagtccc
aaaacatgtcagatatctagaagcatgtgtgaaaattcttttgtcaccca
ccattaattattcaaaacactctcacatcctaatgagtgatattccttgg
aaaatgtggcaggataacagagaactgtttggatttgtttaatgtgtttc
tggctttatatagccactatttcaattacatatgctatcactttatacac
aaaatcaaagctaaggatgattagaatggctgtcctatctttgcataaat
aaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_143221552_143222712
seq2: B6Ng01-139H23.b_48_1198 (reverse)

seq1  CAGCAGAAAATTTCTATATGAATGTTCATTGCAGTTTTCACA-GTTGTCC  49
      ||||||||||||||||||||||   ||| ||||| || |||| |||||||
seq2  CAGCAGAAAATTTCTATATGAA--GTCA-TGCAG-TTCCACAGGTTGTCC  46

seq1  CAAACTGGAAACCCTTAGAAATATTTATCAGTAATGGGATAAAAGTATAG  99
      | |||||  || |||||||||| |||||||||||||||||||||||||||
seq2  C-AACTG--AAACCTTAGAAAT-TTTATCAGTAATGGGATAAAAGTATAG  92

seq1  TATATTCCCATAAGAAAAATGTAAAGCAGTA-TCATGAATACTGTACAAC  148
      |||| | ||||| ||||||| |||||||||| |||||||| |||||| ||
seq2  TATACT-CCATAGGAAAAAT-TAAAGCAGTATTCATGAATCCTGTAC-AC  139

seq1  TATATGCAATAATATGAATTTTTCAAACAAATGTAGTTTGAACAAAATGT  198
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATATGCAATAATATGAA-TTTTCAAACAAATGTAGTTTGAACAAAATGT  188

seq1  AGTTGAATGTACAGGGAAGTATATTCTGCATTAATTCATTTACCAAAAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATGTACAGGGAAGTATATTCTGCATTAATTCATTTACCAAAAGC  238

seq1  AACCACTCTTGGTACATAGTAAAGGGATGGAAACATGACCTAACCCTTGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTCTTGGTACATAGTAAAGGGATGGAAACATGACCTAACCCTTGG  288

seq1  GGTAAGATTATTCTCCTTTAGCTTAGATATCAATGTCACATATTTGTTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGATTATTCTCCTTTAGCTTAGATATCAATGTCACATATTTGTTCA  338

seq1  GTTTGCTAAAGTTCAACAAACTATATAGTTATAATTTATGAATATTATGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTAAAGTTCAACAAACTATATAGTTATAATTTATGAATATTATGT  388

seq1  TAACATATGAAAGATATATGAACCTATTTTCATACCAAATTTTTAAAAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATATGAAAGATATATGAACCTATTTTCATACCAAATTTTTAAAAAG  438

seq1  TATGTCCACATTGATATTAGCTACAACCAAAGTCTATCCATTTCAATGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCACATTGATATTAGCTACAACCAAAGTCTATCCATTTCAATGAA  488

seq1  CTATATGGTCAAAATAGCAATTTTGACTATGTGGAGCATCACAGATTTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGGTCAAAATAGCAATTTTGACTATGTGGAGCATCACAGATTTTA  538

seq1  TAGTTTTTCAATCAATTTTATGTTTATACCTTTATCCACCAAAGTTTTAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTCAATCAATTTTATGTTTATACCTTTATCCACCAAAGTTTTAC  588

seq1  AGAAAAAAAATCAATTATAGAGCTAAAACTAGGAAAACAACTAGCTCTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAATCAATTATAGAGCTAAAACTAGGAAAACAACTAGCTCTAT  638

seq1  GTCCTCTTTCATGACTCATGTGTTTTATAAATACTTTTTTACCAGATAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTTTCATGACTCATGTGTTTTATAAATACTTTTTTACCAGATAGA  688

seq1  ATGAATGATAAGGTTACAGATGCATTCACTTTCATAAAATAATATGATCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGATAAGGTTACAGATGCATTCACTTTCATAAAATAATATGATCA  738

seq1  GATGAATATATGTTAACCCTTAAATGAATGCAATATATTATATATCAAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATATATGTTAACCCTTAAATGAATGCAATATATTATATATCAAAG  788

seq1  ATTCCATGTGTGACATCTCAAAAGTGACAGATAAACATAAGAGAAATATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGTGTGACATCTCAAAAGTGACAGATAAACATAAGAGAAATATT  838

seq1  ATTAATATTTTTCAAAGAAAACACATAGCCAAGGATTTACCACTAATAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATTTTTCAAAGAAAACACATAGCCAAGGATTTACCACTAATAAC  888

seq1  TTACAGTAAAAGATACACTAGTGGCTCAATTATATTGCTCCATAAGAGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTAAAAGATACACTAGTGGCTCAATTATATTGCTCCATAAGAGTA  938

seq1  AATTATGTTCTTTTCCAACTGCCAATGGACTAAGAAACAAATGCTGTAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTTCTTTTCCAACTGCCAATGGACTAAGAAACAAATGCTGTAAT  988

seq1  TGTAATTCTGTTCCCATTTACAAATTCGGCTCACGATGTTTATTAAGTAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTCTGTTCCCATTTACAAATTCGGCTCACGATGTTTATTAAGTAT  1038

seq1  TATATACCAATATATAATGATGAGTGAGGAAAATTCAAGAGGGTTGTGCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACCAATATATAATGATGAGTGAGGAAAATTCAAGAGGGTTGTGCA  1088

seq1  ATAATGGAGAGGGGAGTCCAGGGGAGTTTTGGGGAGAGGAAGATTGTGGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGAGAGGGGAGTCCAGGGGAGTTTTGGGGAGAGGAAGATTGTGGG  1138

seq1  ACTAATGGAATTC  1161
      |||||||||||||
seq2  ACTAATGGAATTC  1151

seq1: chrX_143083475_143084592
seq2: B6Ng01-139H23.g_68_1172

seq1  GAATTCATTAGCTGAATGTAAGGTAATAGTATTAATGGAAGGTTCTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGCTGAATGTAAGGTAATAGTATTAATGGAAGGTTCTTTAA  50

seq1  TGAGGCATAGAAAAGGATAACCTAATGAGAGTTGATAATTTTCACTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATAGAAAAGGATAACCTAATGAGAGTTGATAATTTTCACTTGGA  100

seq1  TGTGGTATGTTGGAGTCATGACAAAATTTTATAAAGGCAAAATGGAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTATGTTGGAGTCATGACAAAATTTTATAAAGGCAAAATGGAATAT  150

seq1  AACGGCCTTGGAGTCAAAGCTGGGTTGGTTATATTATTGATGTAAGAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGCCTTGGAGTCAAAGCTGGGTTGGTTATATTATTGATGTAAGAATC  200

seq1  CTAAAGGAACAGATGGCACTGTAAAACTCAGCCTTTACTTTTGCTTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGAACAGATGGCACTGTAAAACTCAGCCTTTACTTTTGCTTTTGC  250

seq1  CCTTCATGCCAAAAATAAGGGGTAGGAGGAGTGATTCCTGGGCCGTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGCCAAAAATAAGGGGTAGGAGGAGTGATTCCTGGGCCGTCAAG  300

seq1  CTTAGGCTGAGACTGCAGTATTCATTTGCTTAAATATAAGTCAAAGTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCTGAGACTGCAGTATTCATTTGCTTAAATATAAGTCAAAGTGGC  350

seq1  AGTTCCAGTTTCTCAGCCATCAAGTAGTCTTTATGTGATCACACAGTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGTTTCTCAGCCATCAAGTAGTCTTTATGTGATCACACAGTAGT  400

seq1  AATCCATTTCTCACACTCTGTGGAAAAGCAATGTAACGTGAAATCCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATTTCTCACACTCTGTGGAAAAGCAATGTAACGTGAAATCCCCTT  450

seq1  CACAATTCATTTTTAGGATGACATTGACCACTGAGGTATCAACTCCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTCATTTTTAGGATGACATTGACCACTGAGGTATCAACTCCAAAA  500

seq1  TTTGTTTTTGTGCAAACTAGAAAAGTTCCCATTTTCTTCAACAGTTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTGCAAACTAGAAAAGTTCCCATTTTCTTCAACAGTTTTCA  550

seq1  TTGCTGAAGTTTAACTTGGGGTTATCATTCTAGATTGGCCTAGCAACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAAGTTTAACTTGGGGTTATCATTCTAGATTGGCCTAGCAACTTC  600

seq1  ATGTAAGCTTTCTGTTAAGTGAAGGTTATGAAATGGTGGAGAGAAATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGCTTTCTGTTAAGTGAAGGTTATGAAATGGTGGAGAGAAATTTC  650

seq1  CTAAAGGATACTGATCTGAAATATAAATTCCTGTAAGTTTCTATTGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGATACTGATCTGAAATATAAATTCCTGTAAGTTTCTATTGCAAA  700

seq1  TGGAAATGTATTACACCAGGGAAGAAAGATAATTGTCTTTTCATCAGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGTATTACACCAGGGAAGAAAGATAATTGTCTTTTCATCAGGCT  750

seq1  CACATCCTTTTATCACTATCACAATATGAGACATTACAATATTACTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCTTTTATCACTATCACAATATGAGACATTACAATATTACTAATT  800

seq1  TGGCACTTTAAGTGATAGAGTTAAGCTAATAGAAAGTTTAACACAGTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTTTAAGTGATAGAGTTAAGCTAATAGAAAGTTTAACACAGTCCC  850

seq1  AAAACATGTCAGATATCTAGAAGCATGTGTGAAAATTCTTTTGTCACCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGTCAGATATCTAGAAGCATGTGTGAAAATTCTTTTGTCACCCA  900

seq1  CCATTAATTATTCAAAACACTCTCAACATCCTAATGAGTGATATTCCTTG  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCATTAATTATTCAAAACACTCTC-ACATCCTAATGAGTGATATTCCTTG  949

seq1  GAAAATGTTGGCAGGATAACAGAGAACTGTTTGGATTTGTTTAATGTGTT  1000
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATG-TGGCAGGATAACAGAGAACTGTTTGGATTTGTTTAATGTGTT  998

seq1  TCT-GCTTTATATAG-CACTATTTTCAATTACATATGCTTAATCACATAT  1048
      ||| ||||||||||| ||||| |||||||||||||||||  ||||| | |
seq2  TCTGGCTTTATATAGCCACTA-TTTCAATTACATATGCT--ATCAC-TTT  1044

seq1  ATACACAAAAAACAAAAGCTAAAAGGATGTATTTAGTATTTGGCTGTCCT  1098
      ||||||  ||||  ||||||  |||||||   |||| |  ||||||||||
seq2  ATACAC--AAAATCAAAGCT--AAGGATG--ATTAGAA--TGGCTGTCCT  1086

seq1  ATCTTTGCATATAATAAATT  1118
      ||||||||||| ||||||||
seq2  ATCTTTGCATA-AATAAATT  1105