BAC Information

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BAC

Clone NameB6Ng01-139O01
ChromosomeX (Build37)
Map Location 101,610,469 - 101,744,803
singlet/doubletdoublet
Overlap geneUprt, Zdhhc15
Upstream geneTsx, Tsix, Xist, Rps12-ps1, LOC668406, LOC676246, ENSMUSG00000043661, LOC668412, LOC668415, B230206F22Rik, Cnbp2, LOC100042640, Slc16a2, EG621381, EG668426, LOC668430, Rnf12, C77370, Vcp-ps, EG621542
Downstream geneMagee2, LOC622098, LOC676331, 5530601H04Rik, 2610029G23Rik, Magee1, LOC622159, LOC668454, E530001F21Rik, LOC622202, LOC100043213, LOC668458, Cypt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139O01.bB6Ng01-139O01.g
ACCDH938750DH938751
length1,1211,175
definitionDH938750|Mus musculus domesticus DNA, BAC clone: B6Ng01-139O01, 5' end.DH938751|Mus musculus domesticus DNA, BAC clone: B6Ng01-139O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,610,469 - 101,611,594)(101,743,618 - 101,744,803)
sequence
gaattcataagaaaactttcaggctcaggagtccagaaagtgtatggcaa
aatagtaggagatggaacagggtgaacagaaactcttgatggcaaaatag
taggagatggaacagggtgaacagaaactcttgatggcaattttgtctta
agaaattaatgctgtgtgctgcagctattgaatgccttaatcaggagagt
aaaatgatcatacttgtatatccatcaaactatgctggattaacagtatt
tggcttaagagttggaagtgttggattagaaaaaggttcagtggccctat
aattagtcatgagttaccatctgtatgaataggaattgaacccagatcct
ttgcaagaacaaagatcacatttagcaagatcacatttagcagtgtgccc
ctaattgctaaaccaagtctccagcccccattgcctacttcttaaacata
aaactaaatgaaaatttcaagaagccatgtagaatcctatatttcaatca
gaagaagattttaaatttatgaaatacccacatctgatactatagataat
ttctcaaaatctgggcttttactagaaataccaataggtactattgacat
aaagcaacattattgaggtctttaaagattttgttttgttttgttttttt
ctagacggggtttctctgtgtagtcctggctgtcctggaactcactctgt
agaccaggctggcctcaaactcagaaatcagcctgcctctgcctcccaag
tgctgggattaaagacatgcgccaccacgcccagcttaaagatttatttt
ttaaaggtgataagaaattaatttttcttctgaaatgaaatgagaaaaaa
atacaggaattgacttgacaaacacacaaattgacttgacactgtttttc
cctcttctttattgagaatttcataaatacatacatataatgtagtttgc
tctaatcccccactgtcccattccctcccctgcaaatgttcccctatttc
accacttctctctgcaaacttcatgtgcttgttgtttagtcatagtgctg
tctatatgtgcaaggccttagacatatacttgacatgggcaccttctatg
gacaccataatctgaagaaac
gaattcaaagtatctaacaggagcaaaaagaaaacagcctaatagtgaca
ccttggaaattagtcttcacaggagtcatatccttattatgtagacattt
gggatgtttaggtaagtagatattttccaacaggctattttctttcttat
ttttacatgcaagaggcattatgattctagggtaggatgtctgtatagtt
gatcaaaaatactgcagaaaaaggaagatgaaggaaaaactaatgttcct
tctatttagttagaagataagacacttttcaaaagctgcttaaaattaca
ggtattacaatataatattttttttctcagcagagcgaggaatgcttata
atgctaacactctggaggctgatacaggaagattgtaagtttgagaatat
tcagggctacatgataaatctcaaatacacacgtacgcacacgcgcgcac
acatgcgtgtacacacacacactgattaatgagccatgttattgactaaa
tgaacagaataataaaaactgtgctataaaaattaaagataaggacgatt
tcctatggcacacctgatcaagtaaggtttcatgatataaattgaattca
aactatctaataggggcaagaagaaaacagcttaattgcagtgaagagtt
ttggcaactgagtactagatgagaacttgcctgttacatgccaggtaatt
tatagactctgtcacatttaataatcatgatccattctgtaagttgtaaa
tattcaatgaaagtgaagttcagataaacccagtgtcacataacagtgga
tcctgtctccaaatccaaactcttaattactgtaccactcaataatacct
ctccttttctatctcctttatacacttttgggcaccaattaaagaaaata
ctttttcaattcctgtgctcatctgccagaaaaagaaggaagaagaaacg
tgagtaaagttcctgtcttgggatacatttcccagccccttttctctgta
cctcagtttcggtccattattccaggctacctatcgtcagttctgccgtc
agctgaacttgagccagtcaaagtaagctgaataccccaacttgatggct
ttgccaaatgatgtcctccattttgaaagatgcataatgcctaaaggcct
gtgcaatgttttaatatgaaagagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_101610469_101611594
seq2: B6Ng01-139O01.b_49_1169

seq1  GAATTCATAAGAAAACTTTCAGGCTCAGGAGTCCAGAAAGTGTATGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGAAAACTTTCAGGCTCAGGAGTCCAGAAAGTGTATGGCAA  50

seq1  AATAGTAGGAGATGGAACAGGGTGAACAGAAACTCTTGATGGCAAAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAGGAGATGGAACAGGGTGAACAGAAACTCTTGATGGCAAAATAG  100

seq1  TAGGAGATGGAACAGGGTGAACAGAAACTCTTGATGGCAATTTTGTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGATGGAACAGGGTGAACAGAAACTCTTGATGGCAATTTTGTCTTA  150

seq1  AGAAATTAATGCTGTGTGCTGCAGCTATTGAATGCCTTAATCAGGAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTAATGCTGTGTGCTGCAGCTATTGAATGCCTTAATCAGGAGAGT  200

seq1  AAAATGATCATACTTGTATATCCATCAAACTATGCTGGATTAACAGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATCATACTTGTATATCCATCAAACTATGCTGGATTAACAGTATT  250

seq1  TGGCTTAAGAGTTGGAAGTGTTGGATTAGAAAAAGGTTCAGTGGCCCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAAGAGTTGGAAGTGTTGGATTAGAAAAAGGTTCAGTGGCCCTAT  300

seq1  AATTAGTCATGAGTTACCATCTGTATGAATAGGAATTGAACCCAGATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTCATGAGTTACCATCTGTATGAATAGGAATTGAACCCAGATCCT  350

seq1  TTGCAAGAACAAAGATCACATTTAGCAAGATCACATTTAGCAGTGTGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGAACAAAGATCACATTTAGCAAGATCACATTTAGCAGTGTGCCC  400

seq1  CTAATTGCTAAACCAAGTCTCCAGCCCCCATTGCCTACTTCTTAAACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGCTAAACCAAGTCTCCAGCCCCCATTGCCTACTTCTTAAACATA  450

seq1  AAACTAAATGAAAATTTCAAGAAGCCATGTAGAATCCTATATTTCAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAATGAAAATTTCAAGAAGCCATGTAGAATCCTATATTTCAATCA  500

seq1  GAAGAAGATTTTAAATTTATGAAATACCCACATCTGATACTATAGATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGATTTTAAATTTATGAAATACCCACATCTGATACTATAGATAAT  550

seq1  TTCTCAAAATCTGGGCTTTTACTAGAAATACCAATAGGTACTATTGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAAATCTGGGCTTTTACTAGAAATACCAATAGGTACTATTGACAT  600

seq1  AAAGCAACATTATTGAGGTCTTTAAAGATTTTGTTTTGTTTTGTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACATTATTGAGGTCTTTAAAGATTTTGTTTTGTTTTGTTTTTTT  650

seq1  CTAGACGGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACGGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGT  700

seq1  AGACCAGGCTGGCCTCAAACTCAGAAATCAGCCTGCCTCTGCCTCCCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTCAAACTCAGAAATCAGCCTGCCTCTGCCTCCCAAG  750

seq1  TGCTGGGATTAAAGACATGCGCCACCACGCCCAGCTTAAAGATTTATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTAAAGACATGCGCCACCACGCCCAGCTTAAAGATTTATTTT  800

seq1  TT-AAGGTGATAAGAAATTAATTTTTCTTCTGAAATGAAATGAGAAAAAA  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTGATAAGAAATTAATTTTTCTTCTGAAATGAAATGAGAAAAAA  850

seq1  ATACAGGAATTGACTTGACAAACACACAAATTGACTTGACACTGTTTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGAATTGACTTGACAAACACACAAATTGACTTGACACTGTTTTTC  900

seq1  CCTCTTCTTTATTGAGAATTTCATAAATACATACATATAATGTAGTTTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTTTATTGAGAATTTCATAAATACATACATATAATGTAGTTTGC  950

seq1  TCTAATCCCCCACTGTCCCATTCCCTCCCCTGCAAATGTTCCCCTATTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTAATCCCCCACTGTCCCATTCCCTCCCCTGCAAATGTTCCCCTATTT-  999

seq1  CACCACTTCTCTCTGCAAACTTCATGTGCTTGTTGTTTAAGTCCATAGTG  1049
      |||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  CACCACTTCTCTCTGCAAACTTCATGTGCTTGTTGTTT-AGT-CATAGTG  1047

seq1  CTGTCTATATGTGCAAGGGCTTAAGACCATATACTGGAACATGGGCAGCT  1099
      |||||||||||||||||| ||| ||| |||||||| | ||||||||| ||
seq2  CTGTCTATATGTGCAAGGCCTT-AGA-CATATACTTG-ACATGGGCACCT  1094

seq1  TCTTATGGACCACAT-ATCTGAAGAAAC  1126
      || |||||||  ||| ||||||||||||
seq2  TC-TATGGACACCATAATCTGAAGAAAC  1121

seq1: chrX_101743618_101744803
seq2: B6Ng01-139O01.g_69_1243 (reverse)

seq1  GCTCTCTTCATATTATAAACTTGCCACA-GCCTTTAGGACATAATAGCAT  49
      ||||| ||||||||| |||| |  |||| ||||||||| ||| || ||| 
seq2  GCTCT-TTCATATTA-AAACATTGCACAGGCCTTTAGG-CATTAT-GCA-  45

seq1  TCTTTCTAAAATGGAGACAAACTATTTGGCAAAACCCATCAGGTTGGGTT  99
      |||||| |||||||||  | |  ||||||| ||| |||||| |||||| |
seq2  TCTTTC-AAAATGGAG-GACATCATTTGGC-AAAGCCATCAAGTTGGGGT  92

seq1  ATTCAGCTTAACTTTTGACT-GCTCAAGTTCAGCTGGCTGCAGAACTGAC  148
      ||||||||||   ||||||| ||||||||||||||| | |||||||||||
seq2  ATTCAGCTTA--CTTTGACTGGCTCAAGTTCAGCTGACGGCAGAACTGAC  140

seq1  GATAGGTAGCCTGGGAATAATGGAACCGAAACTGAGGTACAGAGAAAAGG  198
      |||||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  GATAGGTAGCCT-GGAATAATGG-ACCGAAACTGAGGTACAGAGAAAAGG  188

seq1  GGCTGGGAATTGTTTCCCAGGCCAGG-ACTTTACTCACGTTTCTTCTTCC  247
      ||||||||| ||| ||||| | |||| |||||||||||||||||||||||
seq2  GGCTGGGAAATGTATCCCAAGACAGGAACTTTACTCACGTTTCTTCTTCC  238

seq1  TTCTTTTTCTGGCAGATGAGGCACAGGAATTG-AAAAGTATTTTCTTTTA  296
      ||||||||||||||||||| |||||||||||| |||||||||||| ||||
seq2  TTCTTTTTCTGGCAGATGA-GCACAGGAATTGAAAAAGTATTTTC-TTTA  286

seq1  ATTGGTGCCCAAAAGTGTATAAAGGAGATAGGAAAAGGAGAGGTATTATT  346
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTGGTGCCCAAAAGTGTATAAAGGAGATA-GAAAAGGAGAGGTATTATT  335

seq1  GAGTGGTACAGTAATTAAGAGTTTGGATTTGGAGACAGGATCCACTGTTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTACAGTAATTAAGAGTTTGGATTTGGAGACAGGATCCACTGTTA  385

seq1  TGTGACACTGGGTTTATCTGAACTTCACTTTCATTGAATATTTACAACTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACACTGGGTTTATCTGAACTTCACTTTCATTGAATATTTACAACTT  435

seq1  ACAGAATGGATCATGATTATTAAATGTGACAGAGTCTATAAATTACCTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGGATCATGATTATTAAATGTGACAGAGTCTATAAATTACCTGG  485

seq1  CATGTAACAGGCAAGTTCTCATCTAGTACTCAGTTGCCAAAACTCTTCAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAACAGGCAAGTTCTCATCTAGTACTCAGTTGCCAAAACTCTTCAC  535

seq1  TGCAATTAAGCTGTTTTCTTCTTGCCCCTATTAGATAGTTTGAATTCAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTAAGCTGTTTTCTTCTTGCCCCTATTAGATAGTTTGAATTCAAT  585

seq1  TTATATCATGAAACCTTACTTGATCAGGTGTGCCATAGGAAATCGTCCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCATGAAACCTTACTTGATCAGGTGTGCCATAGGAAATCGTCCTT  635

seq1  ATCTTTAATTTTTATAGCACAGTTTTTATTATTCTGTTCATTTAGTCAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAATTTTTATAGCACAGTTTTTATTATTCTGTTCATTTAGTCAAT  685

seq1  AACATGGCTCATTAATCAGTGTGTGTGTGTACACGCATGTGTGCGCGCGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGCTCATTAATCAGTGTGTGTGTGTACACGCATGTGTGCGCGCGT  735

seq1  GTGCGTACGTGTGTATTTGAGATTTATCATGTAGCCCTGAATATTCTCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTACGTGTGTATTTGAGATTTATCATGTAGCCCTGAATATTCTCAA  785

seq1  ACTTACAATCTTCCTGTATCAGCCTCCAGAGTGTTAGCATTATAAGCATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAATCTTCCTGTATCAGCCTCCAGAGTGTTAGCATTATAAGCATT  835

seq1  CCTCGCTCTGCTGAGAAAAAAAATATTATATTGTAATACCTGTAATTTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCTCTGCTGAGAAAAAAAATATTATATTGTAATACCTGTAATTTTA  885

seq1  AGCAGCTTTTGAAAAGTGTCTTATCTTCTAACTAAATAGAAGGAACATTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTTTTGAAAAGTGTCTTATCTTCTAACTAAATAGAAGGAACATTA  935

seq1  GTTTTTCCTTCATCTTCCTTTTTCTGCAGTATTTTTGATCAACTATACAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCTTCATCTTCCTTTTTCTGCAGTATTTTTGATCAACTATACAG  985

seq1  ACATCCTACCCTAGAATCATAATGCCTCTTGCATGTAAAAATAAGAAAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTACCCTAGAATCATAATGCCTCTTGCATGTAAAAATAAGAAAGA  1035

seq1  AAATAGCCTGTTGGAAAATATCTACTTACCTAAACATCCCAAATGTCTAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCCTGTTGGAAAATATCTACTTACCTAAACATCCCAAATGTCTAC  1085

seq1  ATAATAAGGATATGACTCCTGTGAAGACTAATTTCCAAGGTGTCACTATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAGGATATGACTCCTGTGAAGACTAATTTCCAAGGTGTCACTATT  1135

seq1  AGGCTGTTTTCTTTTTGCTCCTGTTAGATACTTTGAATTC  1186
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTTTTCTTTTTGCTCCTGTTAGATACTTTGAATTC  1175