MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-140I20
Chromosome	X (Build37)
Map Location	63,407,932 - 63,409,066
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC671840
Downstream gene	Slitrk2, LOC666824, LOC627734
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC671840 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:671840
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Slitrk2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245450 MGI:2679449
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666824 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666824
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC627734 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:627734
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins pseudo : _no_value

name	Slitrk2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110350663 GeneID:245450 MGI:2679449
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SLIT and NTRK-like family, member 2 transcript_id : NM_198863.1

name	Slitrk2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110350664 CCDS:CCDS30169.1 GeneID:245450 MGI:2679449
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007409 - axonogenesis [Evidence IDA] codon_start : 1 exception : mismatches in translation note : slit and trk like gene 2 product : SLIT and NTRK-like family, member 2 protein_id : NP_942563.1

name	LOC671840 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:671840
definition	number : 1 pseudo : _no_value

name	LOC671840 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:671840
definition	number : 2 pseudo : _no_value

name	LOC671840 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:671840
definition	number : 3 pseudo : _no_value

name	LOC671840 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:671840
definition	number : 4 pseudo : _no_value

name	LOC666824 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666824
definition	number : 1 pseudo : _no_value

name	LOC627734 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271665 GeneID:627734
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins product : similar to checkpoint suppressor 1 pseudo : _no_value transcript_id : XR_031567.1

clone name	MSMg01-151B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-173C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303I09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-400D15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-494B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-190B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074H24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-444J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258A12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202K02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-183G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159K05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308L22
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-140I20.b	B6Ng01-140I20.g
ACC	DH939250	DH939251
length	1,126	1,170
definition	DH939250\|Mus musculus domesticus DNA, BAC clone: B6Ng01-140I20, 5' end.	DH939251\|Mus musculus domesticus DNA, BAC clone: B6Ng01-140I20, 3' end.
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattcatttgttggtttttctgaaatgcctgtattcttaccacaaatgg tgaattactatgactttagcatttaaatattacttggttattttcatcag tgttaagaaatgagatgaaaggatcagataaatgttcaaaattcattttt ctgttcagggagtgggtttattatagaaaaggtgagaatattaaaatcca gagggttattcatacattttgtgtgctattaaaaacatggttacaggcat gatgtacttaaatgcaacaataataaaatgcactaaaataattagatatg gtaaattactcactttgacataatttattttatgtagaatattactttaa ttttcattgcttttctgtttaattcataccttgcagaattgggctggaga gaaggcccagtcagtaaagtgcttgacttaaaagcatgacaacctaagtt atgtgcctagaacccatttctaaaaacaagtagctctgtgtggtgatgtt cacgtctaatcctaacactgggtaggtagagagaattttgtgatcactgg agcttgctagccacacaacatatttactgtgtctcaaaggattcatgtct agattgtatggaccaataagaaaagaaaattcaatgaatccaaaatagaa gggcaaacaagagaagttggatttttcctggggggaaaagtatgtgaaat tgatctctgggtaagcacacacacacacacacacacacacacacacacac acacacacacacatgtatacacacaagagtgcatgtgcacacactttttc tcacacatatatgcatgtacttacttaaaaagtagtgtaagcacattatc ttcatatttgcacaagcaaagatatgcatgaatgcaaacatataaatact taaacataagagttgatttcctcatgctaatggaagttatctctaataaa aaatgtatctgaaaatcggaagaaatgcttgagacatgctcatagatgtg gcctttcatgaatcttaaccaggaaaatggaataaataatacctattgaa agattctgtgtcctctttttaagttgaaagactctgaagtatttcaatac tggaatacaaatatgaattatcacat	gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc agatgctggcgaggatgtggagaaagaggaacaatcctccattgttggtg ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc atatatccagaagatgccccaacaggtaagaaggacacatgctccactat gttcatagcagccttatttataatagccagaagctggaaagaacctagat gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa gaaactcacacaatatgtattcactgataagtggatattagccccaaacc taggatacccaagatataagatataatttgctaaacacatgaaactcaag gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa caaaacacccatggaaggagttacagagatggagtttggagctgagatga aaggatggaccatgtagagactgccatagcccagggatccaccccatatc agcatccaaacgctgacaccattgcatacactagcaagattttattgaag ggacgcagatgtagctgtctcttgtgagactatgccagggcccaacaaac acagaagtggatgctcacagtcagctaatggatggatcatagggctccca atggaggagctagagaaagtacccaaggagctaaagggatcttgcaccct tatagtgggacaacatatgactatcagtacccgggagctcttgactctgc tgcctatgtatcaaaagaggctatccgggcttctgaagagagggccaatg ggactgcaacttttatgtcgagtacgggaagactgggccaatggggagtg gtgcggagagagatagggct
quality values	Open. 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Alignment Information

BAC End 1

BAC End 2

seq1: chrX_63407932_63409066
seq2: B6Ng01-140I20.b_40_1165 (reverse)

seq1  ATGTGTATAATTCATATTTGTTATTTCCAGTATTTGAAATAACTTTCAGA  50
      ||||| |||||||||||||||   |||||||| ||||||||   ||||||
seq2  ATGTG-ATAATTCATATTTGT--ATTCCAGTA-TTGAAATA--CTTCAGA  44

seq1  GTTCTTCAACTTAAAAAGAGGACACAGAATCTTCAAATAGTTAATTATTT  100
      ||  |||||||||||||||||||||||||||||  ||||| | |||||||
seq2  GTCTTTCAACTTAAAAAGAGGACACAGAATCTTTCAATAGGT-ATTATTT  93

seq1  AATTCCATTTTCCTGGTT-AGATCCAATGGAAAGCCACATCTATGAGCAT  149
       ||||||||||||||||| |||| | ||| || |||||||||||||||||
seq2  -ATTCCATTTTCCTGGTTAAGATTC-ATGAAAGGCCACATCTATGAGCAT  141

seq1  GTCTCAAGCATTTCTTCCGATTTTCAGATACATTTTTTTATTAGAGATAA  199
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTCTCAAGCATTTCTTCCGATTTTCAGATACA-TTTTTTATTAGAGATAA  190

seq1  CTTCCATTAGCATGAGGAAATCAACTCTTATGTTTTAAGTATTTATATGT  249
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTCCATTAGCATGAGGAAATCAACTCTTATG-TTTAAGTATTTATATGT  239

seq1  TTGCATTCATGCATATCTTTGCTTGTGCAAATATGAAGATAATGTGCTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTCATGCATATCTTTGCTTGTGCAAATATGAAGATAATGTGCTTA  289

seq1  CACTACTTTTTAAGTAAGTACATGCATATATGTGTGAG-AAAAGTGTGTG  348
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACTACTTTTTAAGTAAGTACATGCATATATGTGTGAGAAAAAGTGTGTG  339

seq1  CACATGCACTCTTGTGTGTATACATGTGTGTGTGTGTGTGTGTGTGTGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCACTCTTGTGTGTATACATGTGTGTGTGTGTGTGTGTGTGTGTG  389

seq1  TGTGTGTGTGTGTGTGTGTGTGCTTACCCAGAGATCAATTTCACATACTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGCTTACCCAGAGATCAATTTCACATACTT  439

seq1  TTCCCCCCAGGAAAAATCCAACTTCTCTTGTTTGCCCTTCTATTTTGGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCCAGGAAAAATCCAACTTCTCTTGTTTGCCCTTCTATTTTGGAT  489

seq1  TCATTGAATTTTCTTTTCTTATTGGTCCATACAATCTAGACATGAATCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAATTTTCTTTTCTTATTGGTCCATACAATCTAGACATGAATCCT  539

seq1  TTGAGACACAGTAAATATGTTGTGTGGCTAGCAAGCTCCAGTGATCACAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACACAGTAAATATGTTGTGTGGCTAGCAAGCTCCAGTGATCACAA  589

seq1  AATTCTCTCTACCTACCCAGTGTTAGGATTAGACGTGAACATCACCACAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTCTACCTACCCAGTGTTAGGATTAGACGTGAACATCACCACAC  639

seq1  AGAGCTACTTGTTTTTAGAAATGGGTTCTAGGCACATAACTTAGGTTGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTACTTGTTTTTAGAAATGGGTTCTAGGCACATAACTTAGGTTGTC  689

seq1  ATGCTTTTAAGTCAAGCACTTTACTGACTGGGCCTTCTCTCCAGCCCAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTAAGTCAAGCACTTTACTGACTGGGCCTTCTCTCCAGCCCAAT  739

seq1  TCTGCAAGGTATGAATTAAACAGAAAAGCAATGAAAATTAAAGTAATATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAGGTATGAATTAAACAGAAAAGCAATGAAAATTAAAGTAATATT  789

seq1  CTACATAAAATAAATTATGTCAAAGTGAGTAATTTACCATATCTAATTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAAAATAAATTATGTCAAAGTGAGTAATTTACCATATCTAATTAT  839

seq1  TTTAGTGCATTTTATTATTGTTGCATTTAAGTACATCATGCCTGTAACCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGCATTTTATTATTGTTGCATTTAAGTACATCATGCCTGTAACCA  889

seq1  TGTTTTTAATAGCACACAAAATGTATGAATAACCCTCTGGATTTTAATAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAATAGCACACAAAATGTATGAATAACCCTCTGGATTTTAATAT  939

seq1  TCTCACCTTTTCTATAATAAACCCACTCCCTGAACAGAAAAATGAATTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTTTTCTATAATAAACCCACTCCCTGAACAGAAAAATGAATTTT  989

seq1  GAACATTTATCTGATCCTTTCATCTCATTTCTTAACACTGATGAAAATAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTATCTGATCCTTTCATCTCATTTCTTAACACTGATGAAAATAA  1039

seq1  CCAAGTAATATTTAAATGCTAAAGTCATAGTAATTCACCATTTGTGGTAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTAATATTTAAATGCTAAAGTCATAGTAATTCACCATTTGTGGTAA  1089

seq1  GAATACAGGCATTTCAGAAAAACCAACAAATGAATTC  1135
      |||||||||||||||||||||||||||||||||||||
seq2  GAATACAGGCATTTCAGAAAAACCAACAAATGAATTC  1126

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information