This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
B6Ng01-140J20
Chromosome
X (Build37)
Map Location
117,592,506 - 117,728,797
singlet/doublet
doublet
Overlap gene
Pcdh11x
Upstream gene
Pabpc5
,
LOC236983
,
LOC674318
,
EG545741
,
LOC100039461
,
H2afb3
Downstream gene
LOC245576
,
LOC385419
,
EG434907
Link
Open Mouse BAC browser
Click to get alignment info.
name
Pabpc5
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:93728
MGI:2136401
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC236983
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:236983
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 17 Proteins
pseudo
: _no_value
name
LOC674318
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:674318
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins
pseudo
: _no_value
name
EG545741
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:545741
MGI:3648580
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 mRNAs, 234 ESTs, 25 Proteins
name
LOC100039461
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100039461
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs
name
Pcdh11x
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:245578
MGI:2442849
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
H2afb3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:624957
MGI:3644875
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins
name
LOC245576
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:245576
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 26 Proteins
pseudo
: _no_value
name
LOC385419
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:385419
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 17 Proteins
pseudo
: _no_value
name
EG434907
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:434907
MGI:3647868
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 329 ESTs, 8 Proteins
name
Pabpc5
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142370786
GeneID:93728
MGI:2136401
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: poly A binding protein, cytoplasmic 5
transcript_id
: NM_053114.2
name
EG545741
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149272160
GeneID:545741
MGI:3648580
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 mRNAs, 233 ESTs, 25 Proteins
product
: predicted gene, EG545741, transcript variant 1
transcript_id
: XM_001487781.1
name
EG545741
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94408117
GeneID:545741
MGI:3648580
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 177 ESTs, 2 Proteins
product
: predicted gene, EG545741, transcript variant 2
transcript_id
: XM_974196.1
name
LOC100039461
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149272149
GeneID:100039461
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs
product
: hypothetical protein LOC100039461
transcript_id
: XM_001472925.1
name
Pcdh11x
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:124487050
GeneID:245578
MGI:2442849
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: protocadherin 11 X-linked
transcript_id
: NM_001081385.1
name
H2afb3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94408124
GeneID:624957
MGI:3644875
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins
product
: H2A histone family, member B3
transcript_id
: XM_889501.2
name
EG434907
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149272151
GeneID:434907
MGI:3647868
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 329 ESTs, 8 Proteins
product
: predicted gene, EG434907
transcript_id
: XM_486849.5
name
Pabpc5
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:29336045
CCDS:CCDS30369.1
GeneID:93728
MGI:2136401
definition
GO_component
: GO:0005575 - cellular_component [Evidence ND]
GO_function
: GO:0003674 - molecular_function [Evidence ND]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO_process
: GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
note
: poly A binding protein cytoplasmic 5
product
: poly A binding protein, cytoplasmic 5
protein_id
: NP_444344.1
name
EG545741
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149272161
GeneID:545741
MGI:3648580
definition
codon_start
: 1
product
: similar to glyceraldehyde-3-phosphate-dehydrogenase isoform 1
protein_id
: XP_001487831.1
name
EG545741
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94408118
GeneID:545741
MGI:3648580
definition
codon_start
: 1
product
: similar to glyceraldehyde-3-phosphate-dehydrogenase isoform 2
protein_id
: XP_979290.1
name
LOC100039461
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149272150
GeneID:100039461
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001472975.1
name
H2afb3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:83003549
GeneID:624957
MGI:3644875
definition
codon_start
: 1
product
: similar to H2A-Bbd
protein_id
: XP_894594.1
name
Pcdh11x
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124487051
GeneID:245578
MGI:2442849
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]
GO_process
: GO:0007156 - homophilic cell adhesion [Evidence IEA]
codon_start
: 1
product
: protocadherin 11 X-linked
protein_id
: NP_001074854.1
name
EG434907
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149272152
GeneID:434907
MGI:3647868
definition
codon_start
: 1
product
: similar to Ubiquitin-like, containing PHD and RING finger domains, 1
protein_id
: XP_486849.5
name
LOC236983
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:236983
definition
number
: 1
pseudo
: _no_value
name
LOC674318
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:674318
definition
number
: 1
pseudo
: _no_value
name
LOC674318
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:674318
definition
number
: 2
pseudo
: _no_value
name
LOC245576
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:245576
definition
number
: 1
pseudo
: _no_value
name
LOC245576
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:245576
definition
number
: 2
pseudo
: _no_value
name
LOC385419
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:385419
definition
number
: 2
pseudo
: _no_value
name
LOC385419
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:385419
definition
number
: 1
pseudo
: _no_value
clone name
MSMg01-144A12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-532I05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-210E05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-493M07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-422O20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-046J19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-231A20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-062I11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-444M04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-416A23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-514M14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-491G14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-111I01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-468J19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-047O19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-449O19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-520L24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-453E15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-045B24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-045C24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-405E10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-075B22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-080D10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-143E07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-160A18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-467O16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-274L15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-482A02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-146K14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-518F22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-407N19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-406G02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-126M02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-171F17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-318O08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-493I10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-195L14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-045J03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-480C14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-533E22
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-435D19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-215H18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-371K22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-189D01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-276M15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-004C01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-341G22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-082B09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-172O09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-175F04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-069B08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-211N08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-029I02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-300B02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-345O20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-065L05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-173N10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-238L14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-093M18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-129J17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-348N04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-268L13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-001B24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-309A20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-329N09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-129E04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-229A10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-293F02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-229P01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-224M14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-001O22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-140J20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-307K02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-161L11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-095E22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-080F07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-055H11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-061A17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-226B06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-101A20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-273F05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-288L06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-262D24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-109H16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-019O10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-015G09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-315B02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-101C15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-123M06
singlet/doublet
singlet
plural/unique
unique
