BAC Information

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BAC

Clone NameB6Ng01-140J20
ChromosomeX (Build37)
Map Location 117,592,506 - 117,728,797
singlet/doubletdoublet
Overlap genePcdh11x
Upstream genePabpc5, LOC236983, LOC674318, EG545741, LOC100039461, H2afb3
Downstream geneLOC245576, LOC385419, EG434907
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140J20.bB6Ng01-140J20.g
ACCDH939294DH939295
length1,1901,136
definitionDH939294|Mus musculus domesticus DNA, BAC clone: B6Ng01-140J20, 5' end.DH939295|Mus musculus domesticus DNA, BAC clone: B6Ng01-140J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,592,506 - 117,593,709)(117,727,664 - 117,728,797)
sequence
gaattcaatgtactgataaatctaaattagaatatcttaatttgtttcat
atttgtttctctactgttactttgtgacagaattctcctagtttgcaatt
tctatgtacctcctattttctctctgctaaatacaacataatatttgaca
aagatttatctacttattagacaacatattcaatcaattagccaggaaat
ttttattttttcctaatttctttcaaaattaaatgataagctgttgcttt
tttcttgtagtaattcaattttaaaatttaaatgatatattttatagaat
gatatattgttacaagcaggaaagaaatacaccatcaacttcacctttga
tctgtacaaatttgaaacagaagaacagggagatggctgtgagaattttg
tgccttgtaaaattgtcacagaaactatattcatgaagtctctccagcat
gactgcctaaacatgacctgatctaggacaacaataagcatgactgtcta
aacatgacctgatctaggacaacaataatcggtatgcaaatatgggctga
gaaaagctcaaagggaaacctcatccttccacagagaaataaaggcaatt
gttgagagcaggagaaatagtcttatctaaggaaaaacacaccaattaag
ttatccaataccactggaaacacatacataaaagtaacattaaacagact
aagctcatcatatttttatgtgtattaaaatggcttacagaatatggttg
aaacggcctcaaatctagcagttgttgagtatgtgaggctggttgtctca
gcggtccaaatctggtgctggagttgtggagcattcctggagaactgtta
gtctttagcctatgctggtgtcctgatggatttggatttatttctggcca
catcaacaagagaaagatacacatgccagtgagtatttgggtaaaaaaac
caaaccaaacactcagcaaccaacaaccaaccaaaaaccaaacagtttcc
tccttccatttccttgtatggggctgccactgaagaatgtagttcgaaaa
tgcagtacccatcaccgtggatttagttgattccagaaggattccagttg
accaccctatatttagtccatgaaagtccaaacttggtcaggtggggggc
agtcactcccttagccttgattattcgaaattaaaccaca
gaattctatacctattatttctttcctaacttaattgcagtcatctctaa
aggctcaactcaaattacaccttttctaatgagtattttctgcgtacaat
aacctacttctgtttcactggactttaactcctgtgttacccaacatctg
aaatgcacaatttagtgtaaggttacatgagagtttttatttctaatgta
aattattttgcttcaatcatgctactagtttgctagaagaaaaaaaaaag
aggttcttgaatatgcaataacccatagcctaaaaatcgaaacacacaca
catatacattgagtcactagtgagagtaacagcactttgtcaattggtat
atcattaataaggataaaaaaatgtctgcctattccaaatttctgagtat
gttgtattaaatccatcaaaataaaactggctcaatggatagcaaacaaa
agcagaaaagtttctgtcaaaattgagtgtaaatgaagttatatcattcg
aacttacccttttaatttttaaaatttgagcataaatattttgtagcacc
atgacttaaggtacagcccatgtatgtcttaaagaacttgaaaaatagta
tttacttttttaatgtgaataggtaggtaggttactcaacatatattttt
gctggagagatatatatctcaaaaaagcaaaacaaatcaatgtgaaatta
atccagtggacttataactctttataaatgtattgacacaactctgataa
tcaaaatgtaatttttaagaaaatgaaacttttaggtggacaatgatcat
gtaaacaaggaaatctgtgtctatgtctgccattgactgcttatgtgaat
gagtgtgagacataatacctactaccactgagttgatttttcaagtatta
aatgactgtttacctaagtggttctacattgattcagtatcattgtcact
taaaatattacacatgtggtattatgtcacatgctgcccaagtcatattt
cctattctcaacattccaatcttgatttctaggattactattatacctat
caagagctcattttctggatctctacggttagatccaaatgagaaaagat
tttgataggtcataacatgtactatttcaaccattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_117592506_117593709
seq2: B6Ng01-140J20.b_44_1233

seq1  GAATTCAATGTACTGATAAATCTAAATTAGAATATCTTAATTTGTTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTACTGATAAATCTAAATTAGAATATCTTAATTTGTTTCAT  50

seq1  ATTTGTTTCTCTACTGTTACTTTGTGACAGAATTCTCCTAGTTTGCAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTCTCTACTGTTACTTTGTGACAGAATTCTCCTAGTTTGCAATT  100

seq1  TCTATGTACCTCCTATTTTCTCTCTGCTAAATACAACATAATATTTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTACCTCCTATTTTCTCTCTGCTAAATACAACATAATATTTGACA  150

seq1  AAGATTTATCTACTTATTAGACAACATATTCAATCAATTAGCCAGGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTATCTACTTATTAGACAACATATTCAATCAATTAGCCAGGAAAT  200

seq1  TTTTATTTTTTCCTAATTTCTTTCAAAATTAAATGATAAGCTGTTGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTTCCTAATTTCTTTCAAAATTAAATGATAAGCTGTTGCTTT  250

seq1  TTTCTTGTAGTAATTCAATTTTAAAATTTAAATGATATATTTTATAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTAGTAATTCAATTTTAAAATTTAAATGATATATTTTATAGAAT  300

seq1  GATATATTGTTACAAGCAGGAAAGAAATACACCATCAACTTCACCTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATTGTTACAAGCAGGAAAGAAATACACCATCAACTTCACCTTTGA  350

seq1  TCTGTACAAATTTGAAACAGAAGAACAGGGAGATGGCTGTGAGAATTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACAAATTTGAAACAGAAGAACAGGGAGATGGCTGTGAGAATTTTG  400

seq1  TGCCTTGTAAAATTGTCACAGAAACTATATTCATGAAGTCTCTCCAGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTAAAATTGTCACAGAAACTATATTCATGAAGTCTCTCCAGCAT  450

seq1  GACTGCCTAAACATGACCTGATCTAGGACAACAATAAGCATGACTGTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCTAAACATGACCTGATCTAGGACAACAATAAGCATGACTGTCTA  500

seq1  AACATGACCTGATCTAGGACAACAATAATCGGTATGCAAATATGGGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGACCTGATCTAGGACAACAATAATCGGTATGCAAATATGGGCTGA  550

seq1  GAAAAGCTCAAAGGGAAACCTCATCCTTCCACAGAGAAATAAAGGCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTCAAAGGGAAACCTCATCCTTCCACAGAGAAATAAAGGCAATT  600

seq1  GTTGAGAGCAGGAGAAATAGTCTTATCTAAGGAAAAACACACCAATTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAGCAGGAGAAATAGTCTTATCTAAGGAAAAACACACCAATTAAG  650

seq1  TTATCCAATACCACTGGAAACACATACATAAAAGTAACATTAAACAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAATACCACTGGAAACACATACATAAAAGTAACATTAAACAGACT  700

seq1  AAGCTCATCATATTTTTATGTGTATTAAAATGGCTTACAGAATATGGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATCATATTTTTATGTGTATTAAAATGGCTTACAGAATATGGTTG  750

seq1  AAACGGCCTCAAATCTAGCAGTTGTTGAGTATGTGAGGCTGGTTGTCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGCCTCAAATCTAGCAGTTGTTGAGTATGTGAGGCTGGTTGTCTCA  800

seq1  GCGGTCCAAATCTGGTGCTGGAGTTGTGGAGCATTCCTGGAGAACTGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCCAAATCTGGTGCTGGAGTTGTGGAGCATTCCTGGAGAACTGTTA  850

seq1  GTCTTTAGCCTATGCTGGTGTCCTGATGGATTTGGATTTATTTCTGGCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAGCCTATGCTGGTGTCCTGATGGATTTGGATTTATTTCTGGCCA  900

seq1  CATCAACAAGAGAAAGATACACATGCCAGTGAGTATTTGGGTAAAAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATCAACAAGAGAAAGATACACATGCCAGTGAGTATTTGGGTAAAAAAA-  949

seq1  CCAAAACCAAAACAACCAAGCAAACAAACAAACAAACAAAAAACCAAAAC  1000
       | ||||||||   ||  ||||| |||   ||| ||| ||||||||||  
seq2  -CCAAACCAAA--CACTCAGCAACCAA--CAACCAACCAAAAACCAAA--  992

seq1  AAGTTTCCTCCTTCCATTTTCTTGTATGGGGCTGCCACTGAAAGATGTAG  1050
       |||||||||||||||||| ||||||||||||||||||||||  ||||||
seq2  CAGTTTCCTCCTTCCATTTCCTTGTATGGGGCTGCCACTGAAGAATGTAG  1042

seq1  TTCAGAAAATGCAGTACCCATCAGCGTGAATTTTAGTTGATTCCAGATGT  1100
      ||| ||||||||||||||||||| |||| | |||||||||||||||| | 
seq2  TTC-GAAAATGCAGTACCCATCACCGTGGA-TTTAGTTGATTCCAGAAGG  1090

seq1  ATTCCAGTTGA-CAACCTATA-TTAGTCAATGAAAGTCCAAACCTGGTCA  1148
      ||||||||||| || |||||| |||||| |||||||||||||| ||||||
seq2  ATTCCAGTTGACCACCCTATATTTAGTCCATGAAAGTCCAAACTTGGTCA  1140

seq1  GGTTGGTGGACAGTCACATCCCTTAAGCCATGATTAATTTAGAAATATAA  1198
      || ||| || ||||||| |||||| |||| ||||||  || ||||| |||
seq2  GG-TGGGGGGCAGTCAC-TCCCTT-AGCCTTGATTA--TTCGAAAT-TAA  1184

seq1  ACCACA  1204
      ||||||
seq2  ACCACA  1190

seq1: chrX_117727664_117728797
seq2: B6Ng01-140J20.g_67_1202 (reverse)

seq1  AAATGGTTGAATATGTAACATGTTATGACCATACAAAA--TTATTTCATT  48
      ||||||||||| ||   |||||||||||||   |||||  || | |||||
seq2  AAATGGTTGAA-ATAGTACATGTTATGACCTATCAAAATCTTTTCTCATT  49

seq1  TG--ACTAAACGTAGAGAT-CAGAAAATGAGCTCTTGATAGTAATAATAG  95
      ||   |||| ||||||||| |||||||||||||||||||||  |||||||
seq2  TGGATCTAACCGTAGAGATCCAGAAAATGAGCTCTTGATAGGTATAATAG  99

seq1  TAAT-CTAGAAATCAAAGATTGGAATGTTGAGAATAGG-AATATGACTTG  143
      |||| ||||||||| ||||||||||||||||||||||| |||||||||||
seq2  TAATCCTAGAAATC-AAGATTGGAATGTTGAGAATAGGAAATATGACTTG  148

seq1  GGCAGCATGGTGACATAATACCACATGTGTAATATTTGTAAGTGACAATG  193
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  GGCAGCAT-GTGACATAATACCACATGTGTAATATTT-TAAGTGACAATG  196

seq1  ATACTGAATCAATGTAGAACCACTTAGGTAAAACAGTCATTTAATACTTG  243
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATACTGAATCAATGTAGAACCACTTAGGT-AAACAGTCATTTAATACTTG  245

seq1  AAAAATCAACTCAGTGGTAGTAGGTATTATGTCTCACACTCATTCACATA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAACTCAGTGGTAGTAGGTATTATGTCTCACACTCATTCACATA  295

seq1  AGCAGTCAATGGCAGACATAGACACAGATTTCCTTGTTTACATGATCATT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCAATGGCAGACATAGACACAGATTTCCTTGTTTACATGATCATT  345

seq1  GTCCACCTAAAAGTTTCATTTTCTTAAAAATTACATTTTGATTATCAGAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCTAAAAGTTTCATTTTCTTAAAAATTACATTTTGATTATCAGAG  395

seq1  TTGTGTCAATACATTTATAAAGAGTTATAAGTCCACTGGATTAATTTCAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCAATACATTTATAAAGAGTTATAAGTCCACTGGATTAATTTCAC  445

seq1  ATTGATTTGTTTTGCTTTTTTGAGATATATATCTCTCCAGCAAAAATATA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTGTTTTGCTTTTTTGAGATATATATCTCTCCAGCAAAAATATA  495

seq1  TGTTGAGTAACCTACCTACCTATTCACATTAAAAAAGTAAATACTATTTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGTAACCTACCTACCTATTCACATTAAAAAAGTAAATACTATTTT  545

seq1  TCAAGTTCTTTAAGACATACATGGGCTGTACCTTAAGTCATGGTGCTACA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTCTTTAAGACATACATGGGCTGTACCTTAAGTCATGGTGCTACA  595

seq1  AAATATTTATGCTCAAATTTTAAAAATTAAAAGGGTAAGTTCGAATGATA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTATGCTCAAATTTTAAAAATTAAAAGGGTAAGTTCGAATGATA  645

seq1  TAACTTCATTTACACTCAATTTTGACAGAAACTTTTCTGCTTTTGTTTGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCATTTACACTCAATTTTGACAGAAACTTTTCTGCTTTTGTTTGC  695

seq1  TATCCATTGAGCCAGTTTTATTTTGATGGATTTAATACAACATACTCAGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATTGAGCCAGTTTTATTTTGATGGATTTAATACAACATACTCAGA  745

seq1  AATTTGGAATAGGCAGACATTTTTTTATCCTTATTAATGATATACCAATT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGAATAGGCAGACATTTTTTTATCCTTATTAATGATATACCAATT  795

seq1  GACAAAGTGCTGTTACTCTCACTAGTGACTCAATGTATATGTGTGTGTGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGTGCTGTTACTCTCACTAGTGACTCAATGTATATGTGTGTGTGT  845

seq1  TTCGATTTTTAGGCTATGGGTTATTGCATATTCAAGAACCTCTTTTTTTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATTTTTAGGCTATGGGTTATTGCATATTCAAGAACCTCTTTTTTTT  895

seq1  TTCTTCTAGCAAACTAGTAGCATGATTGAAGCAAAATAATTTACATTAGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTAGCAAACTAGTAGCATGATTGAAGCAAAATAATTTACATTAGA  945

seq1  AATAAAAACTCTCATGTAACCTTACACTAAATTGTGCATTTCAGATGTTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACTCTCATGTAACCTTACACTAAATTGTGCATTTCAGATGTTG  995

seq1  GGTAACACAGGAGTTAAAGTCCAGTGAAACAGAAGTAGGTTATTGTACGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACACAGGAGTTAAAGTCCAGTGAAACAGAAGTAGGTTATTGTACGC  1045

seq1  AGAAAATACTCATTAGAAAAGGTGTAATTTGAGTTGAGCCTTTAGAGATG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATACTCATTAGAAAAGGTGTAATTTGAGTTGAGCCTTTAGAGATG  1095

seq1  ACTGCAATTAAGTTAGGAAAGAAATAATAGGTATAGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAATTAAGTTAGGAAAGAAATAATAGGTATAGAATTC  1136