BAC Information

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BAC

Clone NameB6Ng01-140M21
ChromosomeX (Build37)
Map Location 146,229,572 - 146,339,073
singlet/doubletdoublet
Overlap geneOTTMUSG00000018988, LOC100039651, EG624568
Upstream geneEG624260, LOC434865, EG624310, Ott, LOC666888, LOC100039598, LOC100039890, LOC100039612, EG666923, EG624378, LOC100039934, LOC100039629, LOC382243, EG666961, EG666968
Downstream geneLOC382244, LOC100039669, EG666982, EG624631, EG546387, LOC333588, Tmem29, LOC100040101, Alas2, Apex2, Pfkfb1, Tro, LOC100039716, Maged2, Itih5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140M21.bB6Ng01-140M21.g
ACCDH939433DH939434
length1,043850
definitionDH939433|Mus musculus domesticus DNA, BAC clone: B6Ng01-140M21, 5' end.DH939434|Mus musculus domesticus DNA, BAC clone: B6Ng01-140M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,229,572 - 146,230,627)(146,338,225 - 146,339,073)
sequence
gaattctttgtatattttggttattagcactctatagaatgtagggttgg
tgaagatctttggccaatctgttggttcccgttttctccttttaacagtg
tcctttgcctttcagaagcttttcaattttataaagtcacattttcaatt
gttgatcttagagcctgagccatcagtgttctgttcaggaaattttcccc
tgtgcagatgtgttagaggctctttcctaacttttcttctatcagtgtat
ctggtttcatgtgaaggtccttgatctacttggacttgatctctgatcct
gtatcttctcctatttttagttagacaggatctgtctgcatagcaccggc
tgccccttgttttccttttctcatttctgccctctagtgtcagaatttgt
tactgtaagccaccaaaccaggaagttggtgctttgtgttacctttatct
cctatgaaatgagttgtgtgctgttcctgggtcacaaataatataccgta
attttcacaggccacatggatacatttgagaaaaaaagttttctgttaaa
aaaaaactatttcaatttcataccaatttcatttactgtagtaatcaaat
acaaactgcataatgtgagaaattttcttttgcacttttcctaacaaatt
gttgtatgtgtgtgtgtagacaagttcatttgcaggtgtatatatacatg
tgtgtaagcatgtttgtgtgtacacggtagctgttacatgtgtaggaatt
cttgtacaagattgaaaataccctagaggtcaaatttgagtcttattccc
caggagccatcttcctgtgtgttttgttttttcttgttgtgtgttgtgtt
gttgtttcgaaagaagtctctctctgagacttggaattattgattaggtt
agattgatctgtcaagtaagtccaggcttctcttgtcttttttcttctaa
agttcataaattattaccttggtcaaacttttcaagttttcggtatattg
ctttgtgtgtgttcagggcttgagtgtctaggttacagcgtac
gaattctccccactggggaaagaaatcagttatgctcctactcttcctgt
tcccccttccactcttagttactgttgtattgctgtgaaaagacaatata
accagtgaaacttagaaatcactcaattggggctagcttacaggtttaga
gggttagtccaaggccattccactggagagtggtagcagacaggcaggga
gggaggcaggcagatgtggcactggagcagtagctgagagcttacatctt
ggcagcataaaataaggagagagaagaaagggggtgctgggtctgctgta
ggttctgaaatctcaaagaccaccgccagcacaccctctccaaggccgtg
cttctacttctttttaaacagaacaccaactggggaggaaacattcaagt
ctatactttatttgtttgtttgtttttgttttttgtttgtgttttgagac
agggtttctctgtgtagccctggctgtcctggaactcactctgtagacca
ggttggcctcgaactcagaaatctgcctgcctctgcctcccaagtgctgg
gattaatggcatgcaccaccaatgcccggatcaagtatatacttctatgg
gggtcattttcactcaaaccatcacattctcctcctaaaggtggagcagt
gtcttactttgtagcattgactagaatagaacttgttacattgttattat
ctaggcaattgtgaggctggtttgtcaggagatcaaggttattttcatct
atgtagtcagtctatagtatatgcgacacatttcaatgaacaacaaataa
cagcagcaacaaacaaaacaaaacctaatgggagggggaaggagtggggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_146229572_146230627
seq2: B6Ng01-140M21.b_46_1088

seq1  GAATTCTTTGTATATTTTGGTTATTAGCACTCTATAGAATGTAGGGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTATATTTTGGTTATTAGCACTCTATAGAATGTAGGGTTGG  50

seq1  TGAAGATCTTTGGCCAATCTGTTGGTTCCCGTTTTCTCCTTTTAACAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATCTTTGGCCAATCTGTTGGTTCCCGTTTTCTCCTTTTAACAGTG  100

seq1  TCCTTTGCCTTTCAGAAGCTTTTCAATTTTATAAAGTCACATTTTCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCCTTTCAGAAGCTTTTCAATTTTATAAAGTCACATTTTCAATT  150

seq1  GTTGATCTTAGAGCCTGAGCCATCAGTGTTCTGTTCAGGAAATTTTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATCTTAGAGCCTGAGCCATCAGTGTTCTGTTCAGGAAATTTTCCCC  200

seq1  TGTGCAGATGTGTTAGAGGCTCTTTCCTAACTTTTCTTCTATCAGTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGATGTGTTAGAGGCTCTTTCCTAACTTTTCTTCTATCAGTGTAT  250

seq1  CTGGTTTCATGTGAAGGTCCTTGATCTACTTGGACTTGATCTCTGATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCATGTGAAGGTCCTTGATCTACTTGGACTTGATCTCTGATCCT  300

seq1  GTATCTTCTCCTATTTTTAGTTAGACAGGATCTGTCTGCATAGCACCGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTCTCCTATTTTTAGTTAGACAGGATCTGTCTGCATAGCACCGGC  350

seq1  TGCCCCTTGTTTTCCTTTTCTCATTTCTGCCCTCTAGTGTCAGAATTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTTGTTTTCCTTTTCTCATTTCTGCCCTCTAGTGTCAGAATTTGT  400

seq1  TACTGTAAGCCACCAAACCAGGAAGTTGGTGCTTTGTGTTACCTTTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAAGCCACCAAACCAGGAAGTTGGTGCTTTGTGTTACCTTTATCT  450

seq1  CCTATGAAATGAGTTGTGTGCTGTTCCTGGGTCACAAATAATATACCGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGAAATGAGTTGTGTGCTGTTCCTGGGTCACAAATAATATACCGTA  500

seq1  ATTTTCACAGGCCACATGGATACATTTGAGAAAAAAAGTTTTCTGTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACAGGCCACATGGATACATTTGAGAAAAAAAGTTTTCTGTTAAA  550

seq1  AAAAAACTATTTCAATTTCATACCAATTTCATTTACTGTAGTAATCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTATTTCAATTTCATACCAATTTCATTTACTGTAGTAATCAAAT  600

seq1  ACAAACTGCATAATGTGAGAAATTTTCTTTTGCACTTTTCCTAACAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTGCATAATGTGAGAAATTTTCTTTTGCACTTTTCCTAACAAATT  650

seq1  GTTGTATGTGTGTGTGTAGACAAGTTCATTTGCAGGTGTATATATACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATGTGTGTGTGTAGACAAGTTCATTTGCAGGTGTATATATACATG  700

seq1  TGTGTAAGCATGTTTGTGTGTACACGGTAGCTGTTACATGTGTAGGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAGCATGTTTGTGTGTACACGGTAGCTGTTACATGTGTAGGAATT  750

seq1  CTTGTACAAGATTGAAAATACCCTAGAGGTCAAATTTGAGTCTTATTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACAAGATTGAAAATACCCTAGAGGTCAAATTTGAGTCTTATTCCC  800

seq1  CAGGAGCCATCTTCCTGTGTGTTTTGTTTTTTTCTTGTTGTTGTTGTTGT  850
      |||||||||||||||||||||||||| ||||||||||||||   ||||| 
seq2  CAGGAGCCATCTTCCTGTGTGTTTTG-TTTTTTCTTGTTGT--GTGTTG-  846

seq1  TGTTGTTGTTTTGAAAGAAGTCTCTCCCTGAGACTTGGAATTTATTGATT  900
      ||||||||||| |||||||||||||| ||||||||||||| |||||||||
seq2  TGTTGTTGTTTCGAAAGAAGTCTCTCTCTGAGACTTGGAA-TTATTGATT  895

seq1  AGGCTAGATTGA-CTGTCCAGTAAGTCCCAGGGCTTCTCCTGTCTTTTTT  949
      ||| |||||||| ||||| |||||||||   |||||||| ||||||||||
seq2  AGGTTAGATTGATCTGTCAAGTAAGTCC--AGGCTTCTCTTGTCTTTTTT  943

seq1  CCTTCTAAAAGTTCATAATTTATATACCCTTTGGTTCAAACATTTTCAAG  999
       ||||| ||||||||||| |||| ||||  |||| |||||| ||||||||
seq2  -CTTCT-AAAGTTCATAAATTAT-TACC--TTGG-TCAAAC-TTTTCAAG  986

seq1  TTTTCTGTTAATTTGCTTTGTGTGTGTTCAGGGCTTGTGTGTC-ATGTTA  1048
      ||||| | ||  ||||||||||||||||||||||||| ||||| | ||||
seq2  TTTTC-GGTATATTGCTTTGTGTGTGTTCAGGGCTTGAGTGTCTAGGTTA  1035

seq1  CAGTGTAC  1056
      ||| ||||
seq2  CAGCGTAC  1043

seq1: chrX_146338225_146339073
seq2: B6Ng01-140M21.g_69_918 (reverse)

seq1  CCCCCACTCCTCCCCCCT-CCATTAGGTTTTGTTTTGTTTGTTGCTGCTG  49
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  CCCCCACTCCTTCCCCCTCCCATTAGGTTTTGTTTTGTTTGTTGCTGCTG  50

seq1  TTA-TTGTTGTTCATTGAAATTGTGTCGCATATACTATAGACTGACTACA  98
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTATTTGTTGTTCATTGAAA-TGTGTCGCATATACTATAGACTGACTACA  99

seq1  TAGATGAAAATAACCTTGATCTCCTGACAAACCAGCCTCACAATTGCCTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAAAATAACCTTGATCTCCTGACAAACCAGCCTCACAATTGCCTA  149

seq1  GATAATAACAATGTAACAAGTTCTATTCTAGTCAATGCTACAAAGTAAGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATAACAATGTAACAAGTTCTATTCTAGTCAATGCTACAAAGTAAGA  199

seq1  CACTGCTCCACCTTTAGGAGGAGAATGTGATGGTTTGAGTGAAAATGACC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTCCACCTTTAGGAGGAGAATGTGATGGTTTGAGTGAAAATGACC  249

seq1  CCCATAGAAGTATATACTTGATCCGGGCATTGGTGGTGCATGCCATTAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGAAGTATATACTTGATCCGGGCATTGGTGGTGCATGCCATTAAT  299

seq1  CCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAAC  349

seq1  CTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCC  399

seq1  TGTCTCAAAACACAAACAAAAAACAAAAACAAACAAACAAATAAAGTATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAAACACAAACAAAAAACAAAAACAAACAAACAAATAAAGTATA  449

seq1  GACTTGAATGTTTCCTCCCCAGTTGGTGTTCTGTTTAAAAAGAAGTAGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAATGTTTCCTCCCCAGTTGGTGTTCTGTTTAAAAAGAAGTAGAA  499

seq1  GCACGGCCTTGGAGAGGGTGTGCTGGCGGTGGTCTTTGAGATTTCAGAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGCCTTGGAGAGGGTGTGCTGGCGGTGGTCTTTGAGATTTCAGAAC  549

seq1  CTACAGCAGACCCAGCACCCCCTTTCTTCTCTCTCCTTATTTTATGCTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCAGACCCAGCACCCCCTTTCTTCTCTCTCCTTATTTTATGCTGC  599

seq1  CAAGATGTAAGCTCTCAGCTACTGCTCCAGTGCCACATCTGCCTGCCTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGTAAGCTCTCAGCTACTGCTCCAGTGCCACATCTGCCTGCCTCC  649

seq1  CTCCCTGCCTGTCTGCTACCACTCTCCAGTGGAATGGCCTTGGACTAACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGCCTGTCTGCTACCACTCTCCAGTGGAATGGCCTTGGACTAACC  699

seq1  CTCTAAACCTGTAAGCTAGCCCCAATTGAGTGATTTCTAAGTTTCACTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAACCTGTAAGCTAGCCCCAATTGAGTGATTTCTAAGTTTCACTGG  749

seq1  TTATATTGTCTTTTCACAGCAATACAACAGTAACTAAGAGTGGAAGGGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTGTCTTTTCACAGCAATACAACAGTAACTAAGAGTGGAAGGGGG  799

seq1  AACAGGAAGAGTAGGAGCATAACTGATTTCTTTCCCCAGTGGGGAGAATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAAGAGTAGGAGCATAACTGATTTCTTTCCCCAGTGGGGAGAATT  849

seq1  C  849
      |
seq2  C  850