BAC Information

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BAC

Clone NameB6Ng01-141B09
ChromosomeX (Build37)
Map Location 42,946,097 - 43,124,794
singlet/doubletdoublet
Overlap genenone
Upstream geneWdr40b, LOC665585, 1110059M19Rik, LOC100040038, EG385346
Downstream geneLOC100040075, Actrt1, EG245405, LOC665632
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141B09.bB6Ng01-141B09.g
ACCDH939639DH939640
length1,057723
definitionDH939639|Mus musculus domesticus DNA, BAC clone: B6Ng01-141B09, 5' end.DH939640|Mus musculus domesticus DNA, BAC clone: B6Ng01-141B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,946,097 - 42,947,172)(43,124,076 - 43,124,794)
sequence
gaattcaccaaggccagacatgtgacatggaagttcctccaaggaggtac
agagtggccattgtgtgaagttgttaaggtaaaggctgggtgggttagag
atccaatatagtggcaaatttaaaccctatgatacctgctaactagaact
aaaaatgagatattgaatcagcaaaacggatatgttatagtcagtaaagc
tgaaagggaaaaacaatctaagtcctttgacattttacaataggattttg
cactgctgggtttaaatatcaccatggtctaatatttcctcattgtgcca
catttcctgccttttggaatattaaaatttattttgtgtaactgaagtat
gagttttgatttttcatggagttacagtaaaagattgcttaataagatca
gtttgtacattggttacactaaaggcagagcttctctactgctattagta
tatagtcttattactatgttattctagtggtgtatcaatcaatacattgg
agattcaaagagcagacttcccttagagaaacagtcatagggatgccaag
cagataaaggaagacactcctgagaatgtcaatctgtgggagcaaaacct
ctttccaattctacccctagtaatctaccacaactcctttgctttataac
tactaaaatattaaaataagaaaatttttgtctatatagggtcccttatt
tatttactttacaaaattagagttgtattttgataattggtatttatagt
tctaaaattgtcttaagcttagaaatatcttcctataaaaataaacacag
aaaacgttaaagatttctaatagtatttaagtgcattcttcaggtataaa
aatcagttctgttgtttatattttaaactgttcttaaagtcttttagaaa
cttaaatatgtgtatttaaaatattgtatagtttcacttatcttaatttt
gattgttactgataatatgaaatgtttaatatttaaactagcattgcagt
agttatttagagagctataggaaaatctgatattaaatatgagcttttaa
aatactc
cggaatttgagggattattgtgtatgagtcctctaaatccattgacagat
attttgggtatcaggatcaaagccaattactgggatacagaaacacataa
tgagctgggcatgcttttatcaatcactagtcaaaaacataaatcacaga
cttgcctatagccaaatcgtatctaggcatgttctcaagtgatacctcct
tttctcagaaaactagctaatttcaagttgacaaaaattatcagctggga
caagggatgtgtaagccataaattatttgttttcttcttttagtaagaag
tataatgtaagtggtagctagggttttttgtttgtttctttcaatatatg
tcacttttccttgaaaaattatattaccttctaaaaatttaaagaaataa
ctgaatttatatctgaaaaatctgttgtttaatcacacaaaattaactat
atcaattaaaatacaactcagtatagattatcttcattgatgaagtaatt
tggagactgatatggttatatatgtctatgttttctccattttacagggc
aagggaataggaaaaatgaatttgtgttcagtctaggctacatagtgaat
gcagttttactagagctgggggctagacggagatattatagaataaagaa
aagaggaaataaagtggaggaagatatggaaaagaggaaaatgaggatca
ataaatgatatagggaggaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_42946097_42947172
seq2: B6Ng01-141B09.b_50_1106

seq1  GAATTCACCAAGGCCAGACATGTGACATGGAAGTTCCTCCAAGGAGGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAAGGCCAGACATGTGACATGGAAGTTCCTCCAAGGAGGTAC  50

seq1  AGAGTGGCCATTGTGTGAAGTTGTTAAGGTAAAGGCTGGGTGGGTTAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGCCATTGTGTGAAGTTGTTAAGGTAAAGGCTGGGTGGGTTAGAG  100

seq1  ATCCAATATAGTGGCAAATTTAAACCCTATGATACCTGCTAACTAGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATATAGTGGCAAATTTAAACCCTATGATACCTGCTAACTAGAACT  150

seq1  AAAAATGAGATATTGAATCAGCAAAACGGATATGTTATAGTCAGTAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAGATATTGAATCAGCAAAACGGATATGTTATAGTCAGTAAAGC  200

seq1  TGAAAGGGAAAAACAATCTAAGTCCTTTGACATTTTACAATAGGATTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGGAAAAACAATCTAAGTCCTTTGACATTTTACAATAGGATTTTG  250

seq1  CACTGCTGGGTTTAAATATCACCATGGTCTAATATTTCCTCATTGTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTGGGTTTAAATATCACCATGGTCTAATATTTCCTCATTGTGCCA  300

seq1  CATTTCCTGCCTTTTGGAATATTAAAATTTATTTTGTGTAACTGAAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTGCCTTTTGGAATATTAAAATTTATTTTGTGTAACTGAAGTAT  350

seq1  GAGTTTTGATTTTTCATGGAGTTACAGTAAAAGATTGCTTAATAAGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTGATTTTTCATGGAGTTACAGTAAAAGATTGCTTAATAAGATCA  400

seq1  GTTTGTACATTGGTTACACTAAAGGCAGAGCTTCTCTACTGCTATTAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTACATTGGTTACACTAAAGGCAGAGCTTCTCTACTGCTATTAGTA  450

seq1  TATAGTCTTATTACTATGTTATTCTAGTGGTGTATCAATCAATACATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCTTATTACTATGTTATTCTAGTGGTGTATCAATCAATACATTGG  500

seq1  AGATTCAAAGAGCAGACTTCCCTTAGAGAAACAGTCATAGGGATGCCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAAAGAGCAGACTTCCCTTAGAGAAACAGTCATAGGGATGCCAAG  550

seq1  CAGATAAAGGAAGACACTCCTGAGAATGTCAATCTGTGGGAGCAAAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAAGGAAGACACTCCTGAGAATGTCAATCTGTGGGAGCAAAACCT  600

seq1  CTTTCCAATTCTACCCCTAGTAATCTACCACAACTCCTTTGCTTTATAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAATTCTACCCCTAGTAATCTACCACAACTCCTTTGCTTTATAAC  650

seq1  TACTAAAATATTAAAATAAGAAAATTTTTGTCTATATAGGGTCCCTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAATATTAAAATAAGAAAATTTTTGTCTATATAGGGTCCCTTATT  700

seq1  TATTTACTTTACAAAATTAGAGTTGTATTTTGATAATTGGTATTTATAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTTTACAAAATTAGAGTTGTATTTTGATAATTGGTATTTATAGT  750

seq1  TCTAAAATTGTCTTAAGCTTAGAAATATCTTCCTATAAAAATAAACACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATTGTCTTAAGCTTAGAAATATCTTCCTATAAAAATAAACACAG  800

seq1  AAAACGTTAAAGATTTCTAAAATAGTATTTAAGTGCA-TCTTCAGGTATA  849
      ||||||||||||||||||  ||||||||||||||||| ||||||||||||
seq2  AAAACGTTAAAGATTTCT--AATAGTATTTAAGTGCATTCTTCAGGTATA  848

seq1  AAAATCAGTTCTGTTGTTTATATTTTAAACTGTTCTTAAAGTCTCTAAGA  899
      |||||||||||||||||||||||||||||||||||||||||||| | |||
seq2  AAAATCAGTTCTGTTGTTTATATTTTAAACTGTTCTTAAAGTCTTTTAGA  898

seq1  AACATAAAATATGTTGTATTTAAAATAATTGTATAGTTTCACTTATCTTA  949
      ||| | ||||||| |||||||||||| |||||||||||||||||||||||
seq2  AAC-TTAAATATG-TGTATTTAAAAT-ATTGTATAGTTTCACTTATCTTA  945

seq1  ATTTTGATATGTTACTGTATAATATGGAAATGTTTAATATTTAAACTAGC  999
      |||||||| |||||||| ||||||| ||||||||||||||||||||||||
seq2  ATTTTGAT-TGTTACTG-ATAATAT-GAAATGTTTAATATTTAAACTAGC  992

seq1  AATTGCAGTAGTTTATTTTAAGAGAAGCCATATATGAAAAATCATGATTA  1049
       |||||||||| ||||||  |||| ||| |||   | |||||| ||| ||
seq2  -ATTGCAGTAG-TTATTT--AGAG-AGCTATA---GGAAAATC-TGA-TA  1032

seq1  TTAAATTATGAGCTTTATAAAATACTC  1076
      ||||| |||||||||| ||||||||||
seq2  TTAAA-TATGAGCTTT-TAAAATACTC  1057

seq1: chrX_43124076_43124794
seq2: B6Ng01-141B09.g_69_789 (reverse)

seq1  CCCTTCCTCCCTATATCATTTATTGATCCTCATTTTCCTCTTTTCCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTCCCTATATCATTTATTGATCCTCATTTTCCTCTTTTCCATAT  50

seq1  CTTCCTCCACTTTATTTCCTCTTT--CTTATTCTATAATATCTCCGTCTA  98
      ||||||||||||||||||||||||   |||||||||||||||||||||||
seq2  CTTCCTCCACTTTATTTCCTCTTTTCTTTATTCTATAATATCTCCGTCTA  100

seq1  GCCCCCAGCTCTAGT-AAACTGCATTCACTATGTAGCCTAGACTGAACAC  147
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCCCCCAGCTCTAGTAAAACTGCATTCACTATGTAGCCTAGACTGAACAC  150

seq1  AAATTCATTTTTCCTATTCCCTTGCCCTGTAAAATGGAGAAAACATAGAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATTTTTCCTATTCCCTTGCCCTGTAAAATGGAGAAAACATAGAC  200

seq1  ATATATAACCATATCAGTCTCCAAATTACTTCATCAATGAAGATAATCTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAACCATATCAGTCTCCAAATTACTTCATCAATGAAGATAATCTA  250

seq1  TACTGAGTTGTATTTTAATTGATATAGTTAATTTTGTGTGATTAAACAAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGTTGTATTTTAATTGATATAGTTAATTTTGTGTGATTAAACAAC  300

seq1  AGATTTTTCAGATATAAATTCAGTTATTTCTTTAAATTTTTAGAAGGTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTCAGATATAAATTCAGTTATTTCTTTAAATTTTTAGAAGGTAA  350

seq1  TATAATTTTTCAAGGAAAAGTGACATATATTGAAAGAAACAAACAAAAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTTTCAAGGAAAAGTGACATATATTGAAAGAAACAAACAAAAAA  400

seq1  CCCTAGCTACCACTTACATTATACTTCTTACTAAAAGAAGAAAACAAATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGCTACCACTTACATTATACTTCTTACTAAAAGAAGAAAACAAATA  450

seq1  ATTTATGGCTTACACATCCCTTGTCCCAGCTGATAATTTTTGTCAACTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGGCTTACACATCCCTTGTCCCAGCTGATAATTTTTGTCAACTTG  500

seq1  AAATTAGCTAGTTTTCTGAGAAAAGGAGGTATCACTTGAGAACATGCCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGCTAGTTTTCTGAGAAAAGGAGGTATCACTTGAGAACATGCCTA  550

seq1  GATACGATTTGGCTATAGGCAAGTCTGTGATTTATGTTTTTGACTAGTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACGATTTGGCTATAGGCAAGTCTGTGATTTATGTTTTTGACTAGTGA  600

seq1  TTGATAAAAGCATGCCCAGCTCATTATGTGTTTCTGTATCCCAGTAATTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAAAGCATGCCCAGCTCATTATGTGTTTCTGTATCCCAGTAATTG  650

seq1  GCTTTGATCCTGATACCCAAAGTATCTGTCAATGGATTTAGAGGACTCAT  697
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCTTTGATCCTGATACCCAAAATATCTGTCAATGGATTTAGAGGACTCAT  700

seq1  ACACAATAATACCTCAGAATTC  719
      |||||||||| ||||| |||||
seq2  ACACAATAATCCCTCA-AATTC  721