BAC Information

Click to search

BAC

Clone NameB6Ng01-141E11
ChromosomeX (Build37)
Map Location 123,303,826 - 123,328,013
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665611, EG626048, LOC100040410, LOC100039903, LOC665679
Downstream gene4932411N23Rik, Gm381, LOC100040472, Gm382, 4921511C20Rik, 4930412D23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141E11.bB6Ng01-141E11.g
ACCDH939776DH939777
length927739
definitionDH939776|Mus musculus domesticus DNA, BAC clone: B6Ng01-141E11, 5' end.DH939777|Mus musculus domesticus DNA, BAC clone: B6Ng01-141E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,327,085 - 123,328,013)(123,303,826 - 123,304,562)
sequence
gaattctacatcttgattggagggagaccaggagaagattttcttctgta
ctgggtggaacctgagaataggagattgcaaaaaccttctatactgtaac
acacttcttctaacacggtcacacctactccaatgaggccacacctccta
attatttttctacattttccatttgaccagtcatttttccatcaatttcc
tacattttaaccacctttatttctggagttttcttacatttttatcagaa
atagtgtataaggacatctaaagttttatcagataatgttactctcaatt
tgctcccatatgaaaaatatttttctatgtttacctttataccagtattt
ttccatcaaatacttccatcttaacaaatttttcaataaattttcatcaa
ttttgtcacaaatacttttgaaaaaaatcttgtattttatcttaaaatga
tgatctctattttgtcaagtagtgaatatgaattttctgttttccatttg
aacaatcatttttttcatcaatttcctacattttaaacatattttttctg
tactttttttcatttctatcaaaaatgctgtataagaacatctccatttt
atcagaaaatgtttctctccactttctctaataggaaaaatatgttttct
atgttttcctttctaccagtacgtttttttttcatcgaattcttccattt
taacatattttcctataaattttgtaatattctcaaaactacattggaat
aatatcttttatttcatctttaaaattatgatctctactttctgaaatag
tggaacatgagttttctaaaatttcaattggaccagtcggttttccatca
atttcctccatttaaccatgtttttctggagattcttacattttcattag
aagtagtgtttaagacatcatgaattc
gaattctttggaaaacactactggtagaaaggaatgcgtattaaacatat
ttttctaataggagaaaattgagagaaacattatttgatgaaattcgaga
tgttctaatacattatttctgataaaaatgtaagaaaactacaggaaaaa
atgtggttaaaatggatgaaattgatggaaaaacaggctgttcaaatgga
aaacttagaaaattcatgttcactattttcaaaactatagatcatcatat
tacgataaaataaaagattatattcgaatgtatttgtgacaaaattgaaa
aaaaatattttaaaaacgtgttaaaatggaaataatagattgaaaaatca
ccgggtaaagaggaaaacgtagaaaacatattctttttcattagagaaaa
aggagagaaacattttctgataaatttcgagatgttcttatacactattt
ctgataaaagtgaaaactgtacagaaaaatgtggttaaaatggaggaaat
tgattgaaaaacgattggtcaaatcgaaaatggagaaaactcatgttcac
tatgagagacagctgaggtcatcattgtaagataggggagtgcgagggag
ggtatgggggactttttgggatagaattgggaaacgtaattgaggaaaat
acctaatttaaaaaaaaatacaagatgttattcaatatatttttgagaaa
attgacaaaatatacagaataaatgtttataatggaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_123327085_123328013
seq2: B6Ng01-141E11.b_47_973 (reverse)

seq1  GAATTCATGATGTTCTTATACACTACTTCTAATGAAAATGTAAGAAATCT  50
      |||||||||||| ||||| ||||||||||||||||||||||||| |||||
seq2  GAATTCATGATG-TCTTAAACACTACTTCTAATGAAAATGTAAG-AATCT  48

seq1  CCAGAAAAACATGGTTAAAATGGAGGAAATTGATGGAAAAACCGACTGGT  100
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  CCAGAAAAACATGGTT-AAATGGAGGAAATTGATGG-AAAACCGACTGGT  96

seq1  CAAATTGAAAATTTAGAAAACTCATGTT-CACTATTTCAGAAAGTAGAGA  149
      | |||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  CCAATTGAAATTTTAGAAAACTCATGTTCCACTATTTCAGAAAGTAGAGA  146

seq1  TCATAATTTT-AAGATGAAATAAAAGATATTATTCCAATGTAGTTTTGAG  198
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCATAATTTTAAAGATGAAATAAAAGATATTATTCCAATGTAGTTTTGAG  196

seq1  AATATTTACAAAATTTATAGGAAAATATGTTAAAATGGAAGAATTCGATG  248
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATA-TTACAAAATTTATAGGAAAATATGTTAAAATGGAAGAATTCGATG  245

seq1  AAAAAAAAACGTACTGGTAGAAAGGAAAACATAGAAAACATATTTTTCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACGTACTGGTAGAAAGGAAAACATAGAAAACATATTTTTCCT  295

seq1  ATTAGAGAAAGTGGAGAGAAACATTTTCTGATAAAATGGAGATGTTCTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGAAAGTGGAGAGAAACATTTTCTGATAAAATGGAGATGTTCTTA  345

seq1  TACAGCATTTTTGATAGAAATGAAAAAAAGTACAGAAAAAATATGTTTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCATTTTTGATAGAAATGAAAAAAAGTACAGAAAAAATATGTTTAA  395

seq1  AATGTAGGAAATTGATGAAAAAAATGATTGTTCAAATGGAAAACAGAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGGAAATTGATGAAAAAAATGATTGTTCAAATGGAAAACAGAAAA  445

seq1  TTCATATTCACTACTTGACAAAATAGAGATCATCATTTTAAGATAAAATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTCACTACTTGACAAAATAGAGATCATCATTTTAAGATAAAATA  495

seq1  CAAGATTTTTTTCAAAAGTATTTGTGACAAAATTGATG-AAATTTATTGA  547
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAAGATTTTTTTCAAAAGTATTTGTGACAAAATTGATGAAAATTTATTGA  545

seq1  AAAATTTGTTAAGATGGAAGTATTTGATGGAAAAATACTGGTATAAAGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGTTAAGATGGAAGTATTTGATGGAAAAATACTGGTATAAAGGT  595

seq1  AAACATAGAAAAATATTTTTCATATGGGAGCAAATTGAGAGTAACATTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAGAAAAATATTTTTCATATGGGAGCAAATTGAGAGTAACATTAT  645

seq1  CTGATAAAACTTTAGATGTCCTTATACACTATTTCTGATAAAAATGTAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAAACTTTAGATGTCCTTATACACTATTTCTGATAAAAATGTAAG  695

seq1  AAAACTCCAGAAATAAAGGTGGTTAAAATGTAGGAAATTGATGGAAAAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCCAGAAATAAAGGTGGTTAAAATGTAGGAAATTGATGGAAAAAT  745

seq1  GACTGGTCAAATGGAAAATGTAGAAAAATAATTAGGAGGTGTGGCCTCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTCAAATGGAAAATGTAGAAAAATAATTAGGAGGTGTGGCCTCAT  795

seq1  TGGAGTAGGTGTGACCGTGTTAGAAGAAGTGTGTTACAGTATAGAAGGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAGGTGTGACCGTGTTAGAAGAAGTGTGTTACAGTATAGAAGGTT  845

seq1  TTTGCAATCTCCTATTCTCAGGTTCCACCCAGTACAGAAGAAAATCTTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAATCTCCTATTCTCAGGTTCCACCCAGTACAGAAGAAAATCTTCT  895

seq1  CCTGGTCTCCCTCCAATCAAGATGTAGAATTC  929
      ||||||||||||||||||||||||||||||||
seq2  CCTGGTCTCCCTCCAATCAAGATGTAGAATTC  927

seq1: chrX_123303826_123304562
seq2: B6Ng01-141E11.g_69_807

seq1  GAATTCTTTGGAAAACACTACTGGTAGAAAGGAATGCGTATTAAACATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGAAAACACTACTGGTAGAAAGGAATGCGTATTAAACATAT  50

seq1  TTTTCTAATAGGAGAAAATTGAGAGAAACATTATTTGATGAAATTCGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAATAGGAGAAAATTGAGAGAAACATTATTTGATGAAATTCGAGA  100

seq1  TGTTCTAATACATTATTTCTGATAAAAATGTAAGAAAACTACAGGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAATACATTATTTCTGATAAAAATGTAAGAAAACTACAGGAAAAA  150

seq1  ATGTGGTTAAAATGGATGAAATTGATGGAAAAACAGGCTGTTCAAATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTAAAATGGATGAAATTGATGGAAAAACAGGCTGTTCAAATGGA  200

seq1  AAACTTAGAAAATTCATGTTCACTATTTTCAAAACTATAGATCATCATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAGAAAATTCATGTTCACTATTTTCAAAACTATAGATCATCATAT  250

seq1  TACGATAAAATAAAAGATTATATTCGAATGTATTTGTGACAAAATTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGATAAAATAAAAGATTATATTCGAATGTATTTGTGACAAAATTGAAA  300

seq1  AAAAATATTTTAAAAACGTGTTAAAATGGAAATAATAGATTGAAAAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTTTAAAAACGTGTTAAAATGGAAATAATAGATTGAAAAATCA  350

seq1  CCGGGTAAAGAGGAAAACGTAGAAAACATATTCTTTTTCATTAGAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTAAAGAGGAAAACGTAGAAAACATATTCTTTTTCATTAGAGAAAA  400

seq1  AGGAGAGAAACATTTTCTGATAAATTTTGAGATGTTCTTATACACTATTT  450
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGGAGAGAAACATTTTCTGATAAATTTCGAGATGTTCTTATACACTATTT  450

seq1  CTGATAAAAGTGAAAACTGTACAGAAAAATGTGGTTAAAATGGAGGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAAAGTGAAAACTGTACAGAAAAATGTGGTTAAAATGGAGGAAAT  500

seq1  TGATTGAAAAACGATTGGTCAAATCGAAAATGGAGAAAACTCATGTTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAAAAACGATTGGTCAAATCGAAAATGGAGAAAACTCATGTTCAC  550

seq1  TATGAGAGACAGCTGAGGTCATCATTGTAAGATAGGGGAGTGCGAGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAGACAGCTGAGGTCATCATTGTAAGATAGGGGAGTGCGAGGGAG  600

seq1  GGTATGGGGGAC-TTTTGGGATAGAATT-GGAAACGTAATTGAGGAAAAT  648
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  GGTATGGGGGACTTTTTGGGATAGAATTGGGAAACGTAATTGAGGAAAAT  650

seq1  ACCTAATTT-AAAAAAAATACAAGATGTTATTCAAATATATTTTTGAGAA  697
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  ACCTAATTTAAAAAAAAATACAAGATGTTATTC-AATATATTTTTGAGAA  699

seq1  AATTGACAAAATTTATAGAA-AAATGTTTTATAATGGAAGA  737
      |||||||||||| || |||| ||||| |||||||||||| |
seq2  AATTGACAAAATATACAGAATAAATG-TTTATAATGGAAAA  739