BAC Information

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BAC

Clone NameB6Ng01-141I12
ChromosomeX (Build37)
Map Location 165,369,148 - 165,512,256
singlet/doubletdoublet
Overlap geneArhgap6
Upstream geneFrmpd4, EG667822, EG637566, Msl31
Downstream geneAmelx, Hccs, LOC100040950, BC022960, Mid1, 4933400A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141I12.bB6Ng01-141I12.g
ACCDH939968DH939969
length1,1151,154
definitionDH939968|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I12, 5' end.DH939969|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,511,116 - 165,512,256)(165,369,148 - 165,370,260)
sequence
gaattcctaagcaaaaggaataagcagggtctagggcccaacaaacatca
agaaattcaggatagccatatctaagcaactgcacaggacaactgtctgc
aaaactggcaactgaagtatctgccacaaaagttcaaaccatggccatga
gctgtatgtaaaaaccttattctctacaagaggtattcatatgctgataa
gttgttttaactgtggttctctatagaaaaagtacagtttggagcatttg
tcaattttcatgatattttatggccgatttcaaggacatggaccatgggc
ctttgaagagatttacacaattggttttccaggcagtgcaatctgaaatg
aggaaaacattagttgttacaggaaatacaaggcaggcctgaggcccagg
aggagaaataaatttcccttataaaacattttgttccaaggattagcaaa
gacagaaggtaactgttgctatgtgctaaaataagatattaattccagtg
gcaaaatcaccttggataatcaaaaactgagtacataactatttcccttg
tcattttcttccaaaaataattatatgactaatttcactattaatgacta
catattatatatatatacttgtttttaaaagggaaggcatgtccaagtag
aaaatatttcctttctcttctcataccctcatgatttagcctatgactca
ccctgtaggtgtgttgtcatcccagaaaactggaatctgtattctttata
gtaaaagtacaaaacttcactagggattctattgctttccctagaaagga
acatatatgtggaagtgtaatttgttcagatcaccacagtacagtctgag
aaaccctaacccaacaatagctctcattttcaaacctctcaaagtgaagc
agtcagctagattctagctatcatcatggcactaggaagggcttcctaga
tgtttctaagtagcagacatcgtgtttactcagtatgtatgaattcaaac
tctcttcatatcttctttactagaggcaaataaagattgagatgactgtg
tggtactcactctctactctcaaatagtaaaaggtaagtacccttggcac
ttaaactgatacttt
gaattcatgtcctcctgcctcagcctcagcattctaggtactgagacagt
acaagagctactataccctgcaatgaataatgcttacatgaagaagagac
atacacaccccttttatttaatcacaaagaggaccagaatattctctaat
agctgggcctttaacccggtaacattagtactgcagttctcaaaatgtgg
tctgaggaacacttggggatttgttggttctagaagtttcttgaagtaaa
agtgtttttagttgggcatagcagcacatcctcataatcctagctcttgg
gaagctagtccaatatggccttgaactcaaaagtctggtgactcagagtc
atggctctcttcgcacctaatgtcaataacaatccctagttgcaacaaga
gaaaatgtatcaaggtattgctaaaaatctggttgttggtaaacagccta
attgagactatctcttaaatcagattatgttgcttgtaacaggccatagt
cctggcttttgtcacatagtcatttgtaactataaacaggctgggcaaca
ataatatttattcgaggtaggttgatgccagccaaaatataatgtcctgt
ttttgtggcagaagagaacaggtatttgagggcagttcctttgggaaaag
agaatctatgtctgaaatatttgtggtggtgatagcacatttttatctgc
tccagaagaacagagacaagtcattggattttactgatgtgtttgggtat
ggacatttggaggctcttccattgaaagcaatttatttgtgggtgggttg
atgtccccctccactggaagtccagcctagctataggaagtggcttctct
aggctccatatcttctgctcctatgagtctcaactagggttacccccaaa
gtctcctgggaatctcctcacatcccacacagatctctgttcttttcagg
ctctcctgactcacacctgatctcacccattccctcctaccacctttcca
tctagtctttccggcataattaagctgccatttatttcccttctgaggga
gattcatgcatctccttgatcctctaatcctagtcttggagggaatactg
gatacgatcttagacaaatacaccgtaggataagcacagcgtcttagttt
cttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_165511116_165512256
seq2: B6Ng01-141I12.b_47_1161 (reverse)

seq1  AAAGTATACAGGTTTTATAGTGCAAAAGGGTAACTTTACCTTTTACCTAT  50
      ||||||| |||  |||| |||||  |||||||   |||||||||| ||||
seq2  AAAGTAT-CAG--TTTA-AGTGC-CAAGGGTA--CTTACCTTTTA-CTAT  42

seq1  TTGAGAGTAGGGAGTGAGTA-CACACAGTCATCTCAAATTCTTTATTTTG  99
      |||||||||| ||||||||| ||||||||||||||||  |||||| ||||
seq2  TTGAGAGTAGAGAGTGAGTACCACACAGTCATCTCAA--TCTTTA-TTTG  89

seq1  CCTCTAGGTAAAAGAAGGATAATTGAAGAGGAGTTTTGAAATTCATACCA  149
      |||||||   |||||| ||||  |||||| ||||||   |||||||| ||
seq2  CCTCTAG--TAAAGAA-GATA--TGAAGA-GAGTTT--GAATTCATA-CA  130

seq1  TACTGAGTAAACACGATGTCTGCTACTTTAGAAAACATCTAGGAAGGCCC  199
      |||||||||||||||||||||||||| |||| ||||||||||||| ||||
seq2  TACTGAGTAAACACGATGTCTGCTAC-TTAG-AAACATCTAGGAA-GCCC  177

seq1  TTCCCTAGTGCCATTGATGATAGCTAGAATCTAGCTGACTGCTTCACTTT  249
      || |||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  TT-CCTAGTGCCA-TGATGATAGCTAGAATCTAGCTGACTGCTTCAC-TT  224

seq1  TGAGAGGTTTGAAAATGAGAGCTATTGTTTGGGTTAGGGTTTCTCAGACT  299
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGAGAGGTTTGAAAATGAGAGCTATTG-TTGGGTTAGGGTTTCTCAGACT  273

seq1  GTACTGTGGTGATCTGAACAAATTACACTTCCACATATATGTTCCTTTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGTGGTGATCTGAACAAATTACACTTCCACATATATGTTCCTTTCT  323

seq1  AGGGAAAGCAATAGAATCCCTAGTGAAGTTTTGTACTTTTACTATAAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGCAATAGAATCCCTAGTGAAGTTTTGTACTTTTACTATAAAGA  373

seq1  ATACAGATTCCAGTTTTCTGGGATGACAACACACCTACAGGGTGAGTCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGATTCCAGTTTTCTGGGATGACAACACACCTACAGGGTGAGTCAT  423

seq1  AGGCTAAATCATGAGGGTATGAGAAGAGAAAGGAAATATTTTCTACTTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAATCATGAGGGTATGAGAAGAGAAAGGAAATATTTTCTACTTGG  473

seq1  ACATGCCTTCCCTTTTAAAAACAAGTATATATATATAATATGTAGTCATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCTTCCCTTTTAAAAACAAGTATATATATATAATATGTAGTCATT  523

seq1  AATAGTGAAATTAGTCATATAATTATTTTTGGAAGAAAATGACAAGGGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGAAATTAGTCATATAATTATTTTTGGAAGAAAATGACAAGGGAA  573

seq1  ATAGTTATGTACTCAGTTTTTGATTATCCAAGGTGATTTTGCCACTGGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTATGTACTCAGTTTTTGATTATCCAAGGTGATTTTGCCACTGGAA  623

seq1  TTAATATCTTATTTTAGCACATAGCAACAGTTACCTTCTGTCTTTGCTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATCTTATTTTAGCACATAGCAACAGTTACCTTCTGTCTTTGCTAA  673

seq1  TCCTTGGAACAAAATGTTTTATAAGGGAAATTTATTTCTCCTCCTGGGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGAACAAAATGTTTTATAAGGGAAATTTATTTCTCCTCCTGGGCC  723

seq1  TCAGGCCTGCCTTGTATTTCCTGTAACAACTAATGTTTTCCTCATTTCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCTGCCTTGTATTTCCTGTAACAACTAATGTTTTCCTCATTTCAG  773

seq1  ATTGCACTGCCTGGAAAACCAATTGTGTAAATCTCTTCAAAGGCCCATGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCACTGCCTGGAAAACCAATTGTGTAAATCTCTTCAAAGGCCCATGG  823

seq1  TCCATGTCCTTGAAATCGGCCATAAAATATCATGAAAATTGACAAATGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTCCTTGAAATCGGCCATAAAATATCATGAAAATTGACAAATGCT  873

seq1  CCAAACTGTACTTTTTCTATAGAGAACCACAGTTAAAACAACTTATCAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTGTACTTTTTCTATAGAGAACCACAGTTAAAACAACTTATCAGC  923

seq1  ATATGAATACCTCTTGTAGAGAATAAGGTTTTTACATACAGCTCATGGCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATACCTCTTGTAGAGAATAAGGTTTTTACATACAGCTCATGGCC  973

seq1  ATGGTTTGAACTTTTGTGGCAGATACTTCAGTTGCCAGTTTTGCAGACAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTGAACTTTTGTGGCAGATACTTCAGTTGCCAGTTTTGCAGACAG  1023

seq1  TTGTCCTGTGCAGTTGCTTAGATATGGCTATCCTGAATTTCTTGATGTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGTGCAGTTGCTTAGATATGGCTATCCTGAATTTCTTGATGTTT  1073

seq1  GTTGGGCCCTAGACCCTGCTTATTCCTTTTGCTTAGGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGCCCTAGACCCTGCTTATTCCTTTTGCTTAGGAATTC  1115

seq1: chrX_165369148_165370260
seq2: B6Ng01-141I12.g_69_1222

seq1  GAATTCATGTCCTCCTGCCTCAGCCTCAGCATTCTAGGTACTGAGACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTCCTCCTGCCTCAGCCTCAGCATTCTAGGTACTGAGACAGT  50

seq1  ACAAGAGCTACTATACCCTGCAATGAATAATGCTTACATGAAGAAGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGCTACTATACCCTGCAATGAATAATGCTTACATGAAGAAGAGAC  100

seq1  ATACACACCCCTTTTATTTAATCACAAAGAGGACCAGAATATTCTCTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACCCCTTTTATTTAATCACAAAGAGGACCAGAATATTCTCTAAT  150

seq1  AGCTGGGCCTTTAACCCGGTAACATTAGTACTGCAGTTCTCAAAATGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGCCTTTAACCCGGTAACATTAGTACTGCAGTTCTCAAAATGTGG  200

seq1  TCTGAGGAACACTTGGGGATTTGTTGGTTCTAGAAGTTTCTTGAAGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGAACACTTGGGGATTTGTTGGTTCTAGAAGTTTCTTGAAGTAAA  250

seq1  AGTGTTTTTAGTTGGGCATAGCAGCACATCCTCATAATCCTAGCTCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTTAGTTGGGCATAGCAGCACATCCTCATAATCCTAGCTCTTGG  300

seq1  GAAGCTAGTCCAATATGGCCTTGAACTCAAAAGTCTGGTGACTCAGAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAGTCCAATATGGCCTTGAACTCAAAAGTCTGGTGACTCAGAGTC  350

seq1  ATGGCTCTCTTCGCACCTAATGTCAATAACAATCCCTAGTTGCAACAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTCTTCGCACCTAATGTCAATAACAATCCCTAGTTGCAACAAGA  400

seq1  GAAAATGTATCAAGGTATTGCTAAAAATCTGGTTGTTGGTAAACAGCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTATCAAGGTATTGCTAAAAATCTGGTTGTTGGTAAACAGCCTA  450

seq1  ATTGAGACTATCTCTTAAATCAGATTATGTTGCTTGTAACAGGCCATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGACTATCTCTTAAATCAGATTATGTTGCTTGTAACAGGCCATAGT  500

seq1  CCTGGCTTTTGTCACATAGTCATTTGTAACTATAAACAGGCTGGGCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTTTGTCACATAGTCATTTGTAACTATAAACAGGCTGGGCAACA  550

seq1  ATAATATTTATTCGAGGTAGGTTGATGCCAGCCAAAATATAATGTCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTTATTCGAGGTAGGTTGATGCCAGCCAAAATATAATGTCCTGT  600

seq1  TTTTGTGGCAGAAGAGAACAGGTATTTGAGGGCAGTTCCTTTGGGAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGCAGAAGAGAACAGGTATTTGAGGGCAGTTCCTTTGGGAAAAG  650

seq1  AGAATCTATGTCTGAAATATTTGTGGTGGTGATAGCACA-TTTTATCTGC  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAATCTATGTCTGAAATATTTGTGGTGGTGATAGCACATTTTTATCTGC  700

seq1  TCCAGAAGAACAGAGACAAGTCATTGGATTTTACTGATGTGTTTGGGTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAGAACAGAGACAAGTCATTGGATTTTACTGATGTGTTTGGGTAT  750

seq1  GGACATTTGGAGGCTCTTCCATTGAAAGCAATTTATTTGTGGGTGGGTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTTGGAGGCTCTTCCATTGAAAGCAATTTATTTGTGGGTGGGTTG  800

seq1  ATGTCCCCCTCCACTGGAAGTCCAGCCTAGCTATAGGAAGTGGCTTCTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCCCTCCACTGGAAGTCCAGCCTAGCTATAGGAAGTGGCTTCTCT  850

seq1  AGGCTCCATATCTTCTGCTCCTATGAGTCTCAACTAGGGTTACCCCCAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCATATCTTCTGCTCCTATGAGTCTCAACTAGGGTTACCCCCAAA  900

seq1  GTCTCCTGGGAATCTCCCCACATCCCCAACACAGATCTCTGTTCTCTTTC  949
      ||||||||||||||||| ||||||||  ||||||||||||||||| ||||
seq2  GTCTCCTGGGAATCTCCTCACATCCC--ACACAGATCTCTGTTCT-TTTC  947

seq1  AGGGCTCTCCCTGACTCCACACCTGATCTTCACCCCATTCCCCTCCCTAC  999
      | |||||| ||||||| ||||||||||| ||| |||||||||   |||||
seq2  A-GGCTCT-CCTGACT-CACACCTGATC-TCA-CCCATTCCC--TCCTAC  990

seq1  CACCTCTCCCATCTAGTTCTTTCCCGCCATCTATTTCAGCTGTCCATTTT  1049
      ||||| | |||||||| ||||||| ||    || || ||||| ||| |||
seq2  CACCT-TTCCATCTAG-TCTTTCCGGC---ATAATTAAGCTG-CCA-TTT  1033

seq1  ATTTCCCCTTCTGAGGGAGATTCATGCATTCTCCCTTGAGCCCTCCT-TA  1098
      |||| ||||||||||||||||||||||| ||| ||||||    |||| ||
seq2  ATTT-CCCTTCTGAGGGAGATTCATGCA-TCT-CCTTGA----TCCTCTA  1076

seq1  TTCCTTAGTTTCTTT-----------------------------------  1113
       ||| ||||    ||                                   
seq2  ATCC-TAGT---CTTGGAGGGAATACTGGATACGATCTTAGACAAATACA  1122

seq1  --------------------------------  1113
                                      
seq2  CCGTAGGATAAGCACAGCGTCTTAGTTTCTTT  1154