BAC Information

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BAC

Clone NameB6Ng01-141L22
Chromosome16 (Build37)X (Build37)
Map Location 15,848,088 - 15,849,219159,491,921 - 159,492,071
singlet/doubletsingletsinglet
Overlap gene2410018G20Rik
Upstream geneEfcab1, LOC100042737, LOC665653, LOC385748, LOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc
Downstream geneCebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141L22.bB6Ng01-141L22.g
ACCDH940126DH940127
length1,123956
definitionDH940126|Mus musculus domesticus DNA, BAC clone: B6Ng01-141L22, 5' end.DH940127|Mus musculus domesticus DNA, BAC clone: B6Ng01-141L22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,848,088 - 15,849,219)(159,491,921 - 159,492,071)
sequence
gaattccaaagaaggagattctaacactaccaaagaaatgcttcagcaac
aagataaatgaaccagggaaaatgagaacaaacaggcaaaaagcaaaaac
tgccttcttccatgtcctttcatgtgggctgccaacaggtgtagcccaga
gttagtgctggtgctcccacatcatataatccagttaacgaaaatccctt
accaatgtgccagcatcttaggttttagttgattccagatgtcgtcaagt
taacaatcaagattactaatcacatatgtgcagctgaaacaggttgtatg
cagcaggaaggtgggcatctctcctgggaaacgaaatgatgagcgtgctg
cagctggagtctaccccggccctaattattgggttctgtcttttcaggaa
gaaaccgaggtggccccattcttggcaatgtgaccatatcggcagaacgt
ggaagccgtgaaagacccatccagagaatgccacgccagcccagtgcgac
tcggctgcccaaggtgggaggatctggaaaaagcaactcccgaagcagcc
cataggctgggacagaggctgcacttgacaccgtcttcaagacagatgct
atccaccttcactcctcaaacccttctgaggagctgaatgtctgtagctt
tttgatactattaaaaaatttagatttagaatgagttctatgtggagtcc
tggtttttctacagccaaactaattgggacacaacagtgatttttgtctt
tttggattttatttggagtctaagaaaatatgtatatagatgaatcttct
tcttatttatttattttcttttggctttttcaagactgggtttctctgta
tagccctgactgtcctggaacttactttgtagaccaggctggcctcgaac
tcagaaatcctcctgtctctgcctcccaagtgctgggattaaagtgtgtg
ccaccaccgcccagcatgagtcttcttataaacaagccaacatgctttca
taatgtaaaagttccctacaagtcacccatcatggtgtgtagtcgggtac
ccatatgtcacctggtgaatctgagtcctggtgtgaatgggcaggtaccc
ctctggatcatacatgttgtgaa
gaattctcgcactattattgtgcgtggtaggatgtgtgctttgagcttta
ataaaggttcaaatgctctttcatttggagcatagaggttcagaattgag
agttcatcttggtagatttttcctttgaccagtatgaagtgtcctttctt
atctttttttgataacttttggttgagagttgattttatttgatattaga
atggctagtccagaggcagaggcaattggatttctgagttcgaggccagc
ctggtctacaaagtgagttccaggacagccagtagggctatacagagaaa
ccctgtctcgaaaaaaccaaaaccaaaacaaacaaacaaacaaaaaaaga
atggctactccagtttagaaagttgttttacaacctttttttttttaatc
aatcccatttttttattagatattttctttatttacatttgaaatgttgt
cccctttccaatttcccccgaaaaatctcctatcctctcaactctccccg
tgctccctaacccacccgctccctattcctggcccaggcattcccctaca
ctggggcatagaaccttcacaggaccaagggcctctcctcccactgatga
ccaactaggccatcttcagctacatatgcagctaaattcacgagtccctc
catgtgttttctttgattggtagtttaatcccagggagctctgggggtac
tggttagttcatatggttgttactcctagggggctgcaaacccgttcagc
tccttgggtactttctctagcttccttcattggggaccctgtgctctgtc
taatggatgactgtgagcatccacttctgtatttgtcaggcactggcaga
acctctcagagacagctatatatcagctcctgtcagcaagctcttgttgg
catctgcaatagtatctgggtttggtggttgtttatgggatggatctcca
ggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_15848088_15849219
seq2: B6Ng01-141L22.b_45_1167 (reverse)

seq1  TTCACAACATGTATGATCCAGA-GGGTAACTGCCCATCCACACCAGGACT  49
      |||||||||||||||||||||| ||||| |||||||| ||||||||||||
seq2  TTCACAACATGTATGATCCAGAGGGGTACCTGCCCATTCACACCAGGACT  50

seq1  CAGACTCACCAGGTGACCATACTGGTACCCCGACCTACCAACACCATGAT  99
      |||| ||||||||||| ||||  |||| ||||| ||||  ||||||||||
seq2  CAGATTCACCAGGTGA-CATATGGGTA-CCCGA-CTAC--ACACCATGAT  95

seq1  GGGTGGGCCTTGTAGGGAACTTTTTACATTATGGAAAGCATGTTGGCTTG  149
      ||||  | |||||||||||| ||||||||||| |||||||||||||||||
seq2  GGGT--GACTTGTAGGGAAC-TTTTACATTAT-GAAAGCATGTTGGCTTG  141

seq1  TTTATAAGAAGACTCATGCTGGGCGGTGGTGGCACACACCTTTAATCCCA  199
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTATAAGAAGACTCATGCTGGGCGGTGGTGGCACACA-CTTTAATCCCA  190

seq1  GCACTTGGGAGGCAGAGACAGGAGGATTTCTGAGTTCGAGGCCAGCCTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGGAGGCAGAGACAGGAGGATTTCTGAGTTCGAGGCCAGCCTGG  240

seq1  TCTACAAAGTAAGTTCCAGGACAGTCAGGGCTATACAGAGAAACCCAGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAGTAAGTTCCAGGACAGTCAGGGCTATACAGAGAAACCCAGTC  290

seq1  TTGAAAAAGCCAAAAGAAAATAAATAAATAAGAAGAAGATTCATCTATAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAAGCCAAAAGAAAATAAATAAATAAGAAGAAGATTCATCTATAT  340

seq1  ACATATTTTCTTAGACTCCAAATAAAATCCAAAAAGACAAAAATCACTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTTCTTAGACTCCAAATAAAATCCAAAAAGACAAAAATCACTGT  390

seq1  TGTGTCCCAATTAGTTTGGCTGTAGAAAAACCAGGACTCCACATAGAACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCCAATTAGTTTGGCTGTAGAAAAACCAGGACTCCACATAGAACT  440

seq1  CATTCTAAATCTAAATTTTTTAATAGTATCAAAAAGCTACAGACATTCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAAATCTAAATTTTTTAATAGTATCAAAAAGCTACAGACATTCAG  490

seq1  CTCCTCAGAAGGGTTTGAGGAGTGAAGGTGGATAGCATCTGTCTTGAAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGAAGGGTTTGAGGAGTGAAGGTGGATAGCATCTGTCTTGAAGA  540

seq1  CGGTGTCAAGTGCAGCCTCTGTCCCAGCCTATGGGCTGCTTCGGGAGTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGTCAAGTGCAGCCTCTGTCCCAGCCTATGGGCTGCTTCGGGAGTTG  590

seq1  CTTTTTCCAGATCCTCCCACCTTGGGCAGCCGAGTCGCACTGGGCTGGCG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCAGATCCTCCCACCTTGGGCAGCCGAGTCGCACTGGGCTGGCG  640

seq1  TGGCATTCTCTGGATGGGTCTTTCACGGCTTCCACGTTCTGCCGATATGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTCTCTGGATGGGTCTTTCACGGCTTCCACGTTCTGCCGATATGG  690

seq1  TCACATTGCCAAGAATGGGGCCACCTCGGTTTCTTCCTGAAAAGACAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTGCCAAGAATGGGGCCACCTCGGTTTCTTCCTGAAAAGACAGAA  740

seq1  CCCAATAATTAGGGCCGGGGTAGACTCCAGCTGCAGCACGCTCATCATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATAATTAGGGCCGGGGTAGACTCCAGCTGCAGCACGCTCATCATTT  790

seq1  CGTTTCCCAGGAGAGATGCCCACCTTCCTGCTGCATACAACCTGTTTCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCCCAGGAGAGATGCCCACCTTCCTGCTGCATACAACCTGTTTCAG  840

seq1  CTGCACATATGTGATTAGTAATCTTGATTGTTAACTTGACGACATCTGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACATATGTGATTAGTAATCTTGATTGTTAACTTGACGACATCTGGA  890

seq1  ATCAACTAAAACCTAAGATGCTGGCACATTGGTAAGGGATTTTCGTTAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTAAAACCTAAGATGCTGGCACATTGGTAAGGGATTTTCGTTAAC  940

seq1  TGGATTATATGATGTGGGAGCACCAGCACTAACTCTGGGCTACACCTGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTATATGATGTGGGAGCACCAGCACTAACTCTGGGCTACACCTGTT  990

seq1  GGCAGCCCACATGAAAGGACATGGAAGAAGGCAGTTTTTGCTTTTTGCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCCACATGAAAGGACATGGAAGAAGGCAGTTTTTGCTTTTTGCCT  1040

seq1  GTTTGTTCTCATTTTCCCTGGTTCATTTATCTTGTTGCTGAAGCATTTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTCTCATTTTCCCTGGTTCATTTATCTTGTTGCTGAAGCATTTCT  1090

seq1  TTGGTAGTGTTAGAATCTCCTTCTTTGGAATTC  1132
      |||||||||||||||||||||||||||||||||
seq2  TTGGTAGTGTTAGAATCTCCTTCTTTGGAATTC  1123

seq1: chrX_159491921_159492071
seq2: B6Ng01-141L22.g_281_424

seq1  GAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA  50
      ||||||||||||   |||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAATTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA  50

seq1  GTGAGTTCTAGGACAGCC---AGAGCTATACAGAGAAACCCTGTCTCGAA  97
      |||||||| |||||||||   || ||||||||||||||||||||||||||
seq2  GTGAGTTCCAGGACAGCCAGTAGGGCTATACAGAGAAACCCTGTCTCGAA  100

seq1  AAGACCAAAA-CAAAACAAACAAACAAACAAAAACCCAAAACAAAAAGAA  146
      || ||||||| ||||||||||||||||||||           ||||||||
seq2  AAAACCAAAACCAAAACAAACAAACAAACAA-----------AAAAAGAA  139

seq1  TGGCT  151
      |||||
seq2  TGGCT  144