BAC Information

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BAC

Clone NameB6Ng01-143L08
ChromosomeX (Build37)
Map Location 49,392,927 - 49,522,149
singlet/doubletdoublet
Overlap geneGpc4
Upstream geneLOC385355, Mbnl3, LOC665866, LOC385356, Hs6st2, Usp26, LOC100040479, LOC665888, 1700080O16Rik, LOC100040495
Downstream geneGpc3, Kis2, LOC100041925, LOC665929, 6330534C20Rik, LOC624936, LOC546298, LOC100040569, Phf6, Hprt1, C430049B03Rik, Plac1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143L08.bB6Ng01-143L08.g
ACCDH941574DH941575
length1,146817
definitionDH941574|Mus musculus domesticus DNA, BAC clone: B6Ng01-143L08, 5' end.DH941575|Mus musculus domesticus DNA, BAC clone: B6Ng01-143L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,392,927 - 49,394,088)(49,521,479 - 49,522,149)
sequence
gaattctgatgtgtgcccaagttgaggaagggctgccctagactttaagt
actgccattattgctaactagacgtagagttttctaaggccctagttgga
gtattttgtctggaagggttctatttccccttgtaattactgtcactggc
atgatcatttaatctctcttctagtggtgagatccaccacaatggattcc
aagtctattttccttcattcatatgtccctagtgtctagtacaatgcttg
gcacatagtgccttatcagtgtttgtgcaatgggtaaggcagggccctca
agagccacagaaatttctaggtctctcttctagttagcttctgctatcag
cttgacacaactcaggtttaagtgagggagtctcagctgaaggcttgtct
ctatcagattaacccgtggtcatatctgtgggggtcttttcatggttgct
ggttgatataggcaggcccagctcattcttggaagtgttacttctggatt
gtatcagaaaactggctgagagtaaacaaggaaagcaaaccagtgaacag
tgttcctccatagtcttcacttcagttcttgcctccaagactttgccttg
agttcttggctgacctctctcaaagactgactgtgacccgagattggaaa
taaaataaacccatccctcccccacgttcctttttgatcacggtgtttgt
catggtgacaaaaagtaaaataaaaaacagtgccacatttgctcccatga
tatatccagaaaatttcctaaggcactcatctagtgactctgctcaagct
gacctcggtgtcctggtgttcatctgtcatcccagcactttgaagtcaga
ccttgtgccaggcaacagggtgaaactagggaaactagagctatgtgggc
agaccctgtctctgctttcccaccaaatggcttcagttgaactttagaat
tttctctgtaaacagagcacaactgataaattacttacagatttccctaa
gctgaactcagtgatgagatcactcaaattattcagatgtgatgtcatcg
atgatcagatgtgagtatcatagactatgttatgcaagaaacccagttcg
atgcacctgaaagtgtgttttctttattgattttcccaaagctaga
gaattcaataaaagaagatatgctcaaaatatgtatatatatacatatat
atgcacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagaga
gagagatattgtaagcagatgaattcaaacaatgacacaaaattcaaaat
atcctttgtgtttgaagggatgctaggagttggatcatcgcccctagaga
cgcctacatgtaaggtactatagcatcacattgtggtatgcctgtgtaat
agaatattactcatccttaaaaaggaaggaaatgctgaaacatgttgcca
catagatggatattgagaacttgatgctgaatgaaggtagccagaccaaa
ggtccccacattgaataattctcttcatacaaaatgtccagactaggcaa
aactctagaaacagtaagcagatttggtggcttctagggtctagagtgag
aaaatgaagtatgtggattgttttggggacaaggaaaatgttttggaact
agctatggtgatgactgaacaatattagattattttggaatgttgctgaa
ttgtatattttactttttgtgtcatctgtatgtgcttgtatatgtgcagc
gatgctttgtggaggtcagaggttaaccttgggtgttagtcctcattagt
tttgctatgtgagacaggatctcctactacctggagctcagagctgacca
atttgcctaatctgcctggccaaggagccaagcatcctccatagcattgg
gattacaaatgggtgcgttttcactggagaattttttgtttattttgtgt
tttgtttgagacagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_49392927_49394088
seq2: B6Ng01-143L08.b_48_1193

seq1  GAATTCTGATGTGTGCCCAAGTTGAGGAAGGGCTGCCCTAGACTTTAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATGTGTGCCCAAGTTGAGGAAGGGCTGCCCTAGACTTTAAGT  50

seq1  ACTGCCATTATTGCTAACTAGACGTAGAGTTTTCTAAGGCCCTAGTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCATTATTGCTAACTAGACGTAGAGTTTTCTAAGGCCCTAGTTGGA  100

seq1  GTATTTTGTCTGGAAGGGTTCTATTTCCCCTTGTAATTACTGTCACTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGTCTGGAAGGGTTCTATTTCCCCTTGTAATTACTGTCACTGGC  150

seq1  ATGATCATTTAATCTCTCTTCTAGTGGTGAGATCCACCACAATGGATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCATTTAATCTCTCTTCTAGTGGTGAGATCCACCACAATGGATTCC  200

seq1  AAGTCTATTTTCCTTCATTCATATGTCCCTAGTGTCTAGTACAATGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTATTTTCCTTCATTCATATGTCCCTAGTGTCTAGTACAATGCTTG  250

seq1  GCACATAGTGCCTTATCAGTGTTTGTGCAATGGGTAAGGCAGGGCCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAGTGCCTTATCAGTGTTTGTGCAATGGGTAAGGCAGGGCCCTCA  300

seq1  AGAGCCACAGAAATTTCTAGGTCTCTCTTCTAGTTAGCTTCTGCTATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACAGAAATTTCTAGGTCTCTCTTCTAGTTAGCTTCTGCTATCAG  350

seq1  CTTGACACAACTCAGGTTTAAGTGAGGGAGTCTCAGCTGAAGGCTTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACACAACTCAGGTTTAAGTGAGGGAGTCTCAGCTGAAGGCTTGTCT  400

seq1  CTATCAGATTAACCCGTGGTCATATCTGTGGGGGTCTTTTCATGGTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGATTAACCCGTGGTCATATCTGTGGGGGTCTTTTCATGGTTGCT  450

seq1  GGTTGATATAGGCAGGCCCAGCTCATTCTTGGAAGTGTTACTTCTGGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATATAGGCAGGCCCAGCTCATTCTTGGAAGTGTTACTTCTGGATT  500

seq1  GTATCAGAAAACTGGCTGAGAGTAAACAAGGAAAGCAAACCAGTGAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGAAAACTGGCTGAGAGTAAACAAGGAAAGCAAACCAGTGAACAG  550

seq1  TGTTCCTCCATAGTCTTCACTTCAGTTCTTGCCTCCAAGACTTTGCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCCATAGTCTTCACTTCAGTTCTTGCCTCCAAGACTTTGCCTTG  600

seq1  AGTTCTTGGCTGACCTCTCTCAAAGACTGACTGTGACCCGAGATTGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTGGCTGACCTCTCTCAAAGACTGACTGTGACCCGAGATTGGAAA  650

seq1  TAAAATAAACCCATCCCTCCCCCACGTTCCTTTTTGATCACGGTGTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAACCCATCCCTCCCCCACGTTCCTTTTTGATCACGGTGTTTGT  700

seq1  CATGGTGACAAAAAGTAAAATAAAAAACAGTGCCACATTTGCTCCCATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGACAAAAAGTAAAATAAAAAACAGTGCCACATTTGCTCCCATGA  750

seq1  TATATCCAGAAAATTTCCTAAGGCACTCATCTAGTGACTCTGCTCAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCAGAAAATTTCCTAAGGCACTCATCTAGTGACTCTGCTCAAGCT  800

seq1  GACCTCGGTGTCCTGGTGTTCATCTGTCATCCCAGCACTTTGAAGTCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCGGTGTCCTGGTGTTCATCTGTCATCCCAGCACTTTGAAGTCAGA  850

seq1  CCTTGTGCCAGGCAACAGGGTGAAAACTAGGGAAACTAGAGCTATGTGGG  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTTGTGCCAGGCAACAGGGTG-AAACTAGGGAAACTAGAGCTATGTGGG  899

seq1  CAGACCCTGTCTCTGCTTTCCCACCAAATGGCTTCAAGTTGAACTTTAG-  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  CAGACCCTGTCTCTGCTTTCCCACCAAATGGCTTC-AGTTGAACTTTAGA  948

seq1  ATTTTCTCTGTAAACAGAGCACAACTGATAAATTAACTTACAGATTTCCC  999
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTTTCTCTGTAAACAGAGCACAACTGATAAATT-ACTTACAGATTTCCC  997

seq1  TAAGCTGAACTCAGTGATGAAGATCACTTCAAATTATTCCAGATGTGAGT  1049
      ||||||||||||||||||| ||||||| |||||||||| ||||||||| |
seq2  TAAGCTGAACTCAGTGATG-AGATCAC-TCAAATTATT-CAGATGTGA-T  1043

seq1  GTCATCAGATGATTCCAGATGTGAGTATCATTAGACTATTGTTATGCAAA  1099
      |||||| ||||||  ||||||||||||||| ||||||| |||||||| ||
seq2  GTCATC-GATGAT--CAGATGTGAGTATCA-TAGACTA-TGTTATGC-AA  1087

seq1  GAAACCACAGGTCGATGCACCCTGAAAGT-TGTTTTCTTTTATTGATTTT  1148
      |||||| ||| |||||||| ||||||||| ||||||| ||||||||||||
seq2  GAAACC-CAGTTCGATGCA-CCTGAAAGTGTGTTTTC-TTTATTGATTTT  1134

seq1  CCCCAAAGGCTAGA  1162
      |||  || ||||||
seq2  CCC--AAAGCTAGA  1146

seq1: chrX_49521479_49522149
seq2: B6Ng01-143L08.g_66_739 (reverse)

seq1  GGAGATCCTGTCTCACATAGCAAAACTAATGAGGACTAACACCCAAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCCTGTCTCACATAGCAAAACTAATGAGGACTAACACCCAAGGTT  50

seq1  AACCTCTGACCTCCAC-AAGCATCGCTGCACATATACAAGCACATACAGA  99
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AACCTCTGACCTCCACAAAGCATCGCTGCACATATACAAGCACATACAGA  100

seq1  TGACAC-AAAAGTAAAATATACAATTCAGCAACATTCC-AAATAATCTAA  147
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  TGACACAAAAAGTAAAATATACAATTCAGCAACATTCCAAAATAATCTAA  150

seq1  TATTGTTCAGTCATCACCATAGCTAGTTCCAAAACATTTTCCTTGTCCCC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTCAGTCATCACCATAGCTAGTTCCAAAACATTTTCCTTGTCCCC  200

seq1  AAAACAATCCACATACTTCATTTTCTCACTCTAGACCCTAGAAGCCACCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATCCACATACTTCATTTTCTCACTCTAGACCCTAGAAGCCACCA  250

seq1  AATCTGCTTACTGTTTCTAGAGTTTTGCCTAGTCTGGACATTTTGTATGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCTTACTGTTTCTAGAGTTTTGCCTAGTCTGGACATTTTGTATGA  300

seq1  AGAGAATTATTCAATGTGGGGACCTTTGGTCTGGCTACCTTCATTCAGCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTATTCAATGTGGGGACCTTTGGTCTGGCTACCTTCATTCAGCA  350

seq1  TCAAGTTCTCAATATCCATCTATGTGGCAACATGTTTCAGCATTTCCTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTCTCAATATCCATCTATGTGGCAACATGTTTCAGCATTTCCTTC  400

seq1  CTTTTTAAGGATGAGTAATATTCTATTACACAGGCATACCACAATGTGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAGGATGAGTAATATTCTATTACACAGGCATACCACAATGTGAT  450

seq1  GCTATAGTACCTTACATGTAGGCGTCTCTAGGGGCGATGATCCAACTCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGTACCTTACATGTAGGCGTCTCTAGGGGCGATGATCCAACTCCT  500

seq1  AGCATCCCTTCAAACACAAAGGATATTTTGAATTTTGTGTCATTGTTTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCCTTCAAACACAAAGGATATTTTGAATTTTGTGTCATTGTTTGA  550

seq1  ATTCATCTGCTTACAATATCTCTCTCTCTCTCTCTCTCACACACACACAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTGCTTACAATATCTCTCTCTCTCTCTCTCTCACACACACACAC  600

seq1  ACACACACACACACACACGTGCATATATATGTATATATATACATATTTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACGTGCATATATATGTATATATATACATATTTTG  650

seq1  AGCATATCTTCTTTTATTGAATTC  671
      ||||||||||||||||||||||||
seq2  AGCATATCTTCTTTTATTGAATTC  674