BAC Information

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BAC

Clone NameB6Ng01-145O09
ChromosomeX (Build37)
Map Location 50,899,144 - 51,093,271
singlet/doubletdoublet
Overlap geneCxx1c, LOC100040644, Cxx1a, Cxx1b, AW822252, 4930502E18Rik, 1700013H16Rik, EG547172, Zfp36l3, Xlr
Upstream geneGpc3, Kis2, LOC100041925, LOC665929, 6330534C20Rik, LOC624936, LOC546298, LOC100040569, Phf6, Hprt1, C430049B03Rik, Plac1, 4632404H22Rik, 4930432H15Rik, LOC385527, Mospd1, LOC100040609, Etd
Downstream geneLOC100040719, LOC100040730, LOC100040260, LOC100040271, LOC100040765, LOC194788, LOC100040789, LOC666072, LOC100040317, LOC625476, LOC625508, LOC666096, LOC100040867, LOC100040894, LOC666122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145O09.bB6Ng01-145O09.g
ACCDH943180DH943181
length8691,188
definitionDH943180|Mus musculus domesticus DNA, BAC clone: B6Ng01-145O09, 5' end.DH943181|Mus musculus domesticus DNA, BAC clone: B6Ng01-145O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,899,144 - 50,900,021)(51,092,087 - 51,093,271)
sequence
gaattcagcaaagccgcttagtatcttaagagagaatggtcagaagcttg
gtaccttaggatattcatctcaatatcttggtacctcaatagaatcagcc
caggagtttggtatcctaagagatttagttctgcggcttggtaacttaaa
agagaaaggccagctgcttggtatcttaagagagtcagtccatcagcttg
gtacactaagagagtgagtttagcagcttggtacttgaagacagtcacct
cagcagtttggtaacttaagacagtcagcaaagcagcttagtatcttaag
agatttaggtcagaagcttggtaccttaagagggtcagagtagcagcttg
gtaccctaagagatacaggccagcagcttagtagcttactagagtcaggg
caacagcttggtagcataagagagacaggccagcaaattggtagcttaag
agtgtccatccagaatcctgctagcttgagacaagtcagctcagcagctt
ggtagcatgagacagacaggccagcagctttgtagctcagccacttggtt
cagagaggcagacttccagcctgtggatttggcccagatgattggcaaaa
aaaaaaaaaaaaaagaagaagaggaaagtactgttcccaggtggtggtag
agggaaagatttttgtagatacgaggaagaacatggccagagtttgagac
cactgggagcacccagaatggatatgaccatcagactaagttgggaccat
ggagggagaggactgagggatgatccgggaggccaagggtccattaggca
gaaaggcattcatgacaaaatgtctgggttatacatgaaaaactggctaa
aagggaggcagtacagtcc
gaattctttaatgtaacccttattacttttttaaaattttattttatggg
tatggttgctttgcttgcatgtgtgtatgcacacaacttgtatgccttgt
acctgaaggaggccagatgaaggcattgaatcccttggaactggagttat
aggttgtgagccaccttgtggatactgggaatccaatctcagatctctgg
aagggaaccagtgttcttaactgatgaatcatctctccagtcccctcact
gatttttataaaatgaattatgtaactgaaagtgaaagacaactttacta
accagtgagagaatgaaactcagatcccaaagaatctattttaaattatc
tgtaattgaatgttgcatgagctttcttagaagacaataatttgtctttg
agatatggtctcactatgtaggtcaggctggcctgaattttcctatgtaa
cctatgttgtcctttacactggaaatctcctgctaagcttcctagactag
gatcatagacccaaaacgtcttacatggcttaggaaacaatgctcttaat
acctaatttttagacttatttatgtgtattagtgttttgcttataggtat
atatgtgcaccacatgtgtgcctgttgcccatagatatcagatgattatt
tcagataccttagaactggagtcacagatagttgtgatccaccatgtgtg
tgctggacaccaaacctaggtcctttgcaaagagcagcaagtgctcttaa
ctgctgagccatctctctacccccatgaaacaatattatattttaagaaa
aacaatatttttaaggttatgcattttataaaatcattttgataactgaa
ggatttgctctatttggaggaggcataataatcatttaataatctgtaat
atatatatatatatatatatataactatatattgttgagagtattaaaca
tgtcacataatataagctttcaacctaattactgaaaagctaactaattt
gttgctagaaagtacttaacattttctgagcattacaattttaatgaact
gcagagttactgatgaaatgtcctacaaaatgttcttcaactgttttttg
taaagaaaatgttcttgaagataaatttggacatatctctttagaaaaaa
aacttttatagattaaaaaaccgggaattctgttttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_50899144_50900021
seq2: B6Ng01-145O09.b_49_917

seq1  GAATTCAGCAAAGCCGCTTAGTATCTTAAGAGAGAATGGTCAGAAGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAAAGCCGCTTAGTATCTTAAGAGAGAATGGTCAGAAGCTTG  50

seq1  GTACCTTAGGATATTCATCTCAATATCTTGGTACCTCAATAGAATCAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTAGGATATTCATCTCAATATCTTGGTACCTCAATAGAATCAGCC  100

seq1  CAGGAGTTTGGTATCCTAAGAGATTTAGTTCTGCGGCTTGGTAACTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTTGGTATCCTAAGAGATTTAGTTCTGCGGCTTGGTAACTTAAA  150

seq1  AGAGAAAGGCCAGCTGCTTGGTATCTTAAGAGAGTCAGTCCATCAGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGGCCAGCTGCTTGGTATCTTAAGAGAGTCAGTCCATCAGCTTG  200

seq1  GTACACTAAGAGAGTGAGTTTAGCAGCTTGGTACTTGAAGACAGTCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTAAGAGAGTGAGTTTAGCAGCTTGGTACTTGAAGACAGTCACCT  250

seq1  CAGCAGTTTGGTAACTTAAGACAGTCAGCAAAGCAGCTTAGTATCTTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTTGGTAACTTAAGACAGTCAGCAAAGCAGCTTAGTATCTTAAG  300

seq1  AGATTTAGGTCAGAAGCTTGGTACCTTAAGAGGGTCAGAGTAGCAGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAGGTCAGAAGCTTGGTACCTTAAGAGGGTCAGAGTAGCAGCTTG  350

seq1  GTACCCTAAGAGATACAGGCCAGCAGCTTAGTAGCTTACTAGAGTCAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCTAAGAGATACAGGCCAGCAGCTTAGTAGCTTACTAGAGTCAGGG  400

seq1  CAACAGCTTGGTAGCATAAGAGAGACAGGCCAGCAAATTGGTAGCTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTTGGTAGCATAAGAGAGACAGGCCAGCAAATTGGTAGCTTAAG  450

seq1  AGTGTCCATCCAGAATCCTGCTAGCTTGAGACAAGTCAGCTCAGCAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCATCCAGAATCCTGCTAGCTTGAGACAAGTCAGCTCAGCAGCTT  500

seq1  GGTAGCATGAGACAGACAGGCCAGCAGCTTTGTAGCTCAGCCACTTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCATGAGACAGACAGGCCAGCAGCTTTGTAGCTCAGCCACTTGGTT  550

seq1  CAGAGAGGCAGACTTCCAGCCTGTGGATTTGGCCCAGATGATTGGCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  CAGAGAGGCAGACTTCCAGCCTGTGGATTTGGCCCAGATGATTGGC---A  597

seq1  AAAAAAAAAAAAAAAAAGAAGAAGAGGAAAGTACTGTTCCCAGGT-GTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAAAAAAAAAAAAAAAGAAGAAGAGGAAAGTACTGTTCCCAGGTGGTGG  647

seq1  TAGAGGGGAAAGATTTTTGTAGATACGAGGAAGAACATGGCCAGAGTTTG  699
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGA-GGGAAAGATTTTTGTAGATACGAGGAAGAACATGGCCAGAGTTTG  696

seq1  AGACAACTGGGAGCACCCAGAATGGATATGACCATCAGACTAAGTTGGGA  749
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACTGGGAGCACCCAGAATGGATATGACCATCAGACTAAGTTGGGA  746

seq1  CCCATGA-GGAGAGGACTGAGGGATGATCCGGGAGGCCAAGGGCCCCAAT  798
      ||   || |||||||||||||||||||||||||||||||||||  ||| |
seq2  CCATGGAGGGAGAGGACTGAGGGATGATCCGGGAGGCCAAGGG-TCCATT  795

seq1  AGGCAAGAAAGGCAGTCATAGACAAGATGTCTGGGTTATACATGGAAGAG  848
      |||| ||||||||| |||| ||||| |||||||||||||||||    || 
seq2  AGGC-AGAAAGGCATTCAT-GACAAAATGTCTGGGTTATACAT----GAA  839

seq1  AAGCTGGCTAAGAGGAGGCCAGTACAGTCC  878
      || |||||||| |||  | |||||||||||
seq2  AAACTGGCTAAAAGGGAGGCAGTACAGTCC  869

seq1: chrX_51092087_51093271
seq2: B6Ng01-145O09.g_71_1258 (reverse)

seq1  TCAAAACAAGAATCCCCAGGTTTTTTAAATCTAATAAAA---TTATTTCT  47
      ||||||| ||||| ||| |||||||| ||||| ||||||   || |||||
seq2  TCAAAAC-AGAATTCCC-GGTTTTTT-AATCT-ATAAAAGTTTTTTTTCT  46

seq1  AAAGAG-TATAGTCAATTATA-CTTC-AGAACATATCTTTTAC-AAAAAC  93
      |||||| |||   ||| | || |||| ||||||| |  ||||| ||||||
seq2  AAAGAGATATGTCCAAATTTATCTTCAAGAACATTTTCTTTACAAAAAAC  96

seq1  AGTTGAAGAACATTTTTGTAGGACATTCTCATCAGTAACTACTGCAGTTC  143
      |||||||||||| |||||||||||||| |||||||||||| |||||||||
seq2  AGTTGAAGAACA-TTTTGTAGGACATT-TCATCAGTAACT-CTGCAGTTC  143

seq1  ATTAAAATTGTAATGCTTCAGAAAATGTTTAGTACCTTTCTAGC-ACAAA  192
      |||||||||||||||| |||||||||||| |||| ||||||||| |||||
seq2  ATTAAAATTGTAATGC-TCAGAAAATGTTAAGTA-CTTTCTAGCAACAAA  191

seq1  -TAGTTAGC-TTTCAGTAATTAGGTTG-AAGC-TATATTATGGTGTACAT  238
       |||||||| ||||||||||||||||| |||| |||||||| ||| ||||
seq2  TTAGTTAGCTTTTCAGTAATTAGGTTGAAAGCTTATATTAT-GTG-ACAT  239

seq1  GTTTAATACTCTCAAC-ATATATAGTTATATATATATATATATATATATA  287
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTTAATACTCTCAACAATATATAGTTATATATATATATATATATATATA  289

seq1  TTACAGATTATTAAATGATTATTATGCCTCCTCCAAATAGAGCAAATCCT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATTATTAAATGATTATTATGCCTCCTCCAAATAGAGCAAATCCT  339

seq1  TCAGTTATCAAAATGATTTTATAAAATGCATAACCTTAAAAATATTGTTT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTATCAAAATGATTTTATAAAATGCATAACCTTAAAAATATTGTTT  389

seq1  TTCTT-AAATATAATATTGTTTCATGGGGGTAGAGAGATGGCTCAGCAGT  436
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAATATAATATTGTTTCATGGGGGTAGAGAGATGGCTCAGCAGT  439

seq1  TAAGAGCACTTGCTGCTCTTTGCAAAGGACCTAGGTTTGGTGTCCAGCAC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCACTTGCTGCTCTTTGCAAAGGACCTAGGTTTGGTGTCCAGCAC  489

seq1  ACACATGGTGGATCACAACTATCTGTGACTCCAGTTCTAAGGTATCTGAA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGTGGATCACAACTATCTGTGACTCCAGTTCTAAGGTATCTGAA  539

seq1  ATAATCATCTGATATCTATGGGCAACAGGCACACATGTGGTGCACATATA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCATCTGATATCTATGGGCAACAGGCACACATGTGGTGCACATATA  589

seq1  TACCTATAAGCAAAACACTAATACACATAAATAAGTCTAAAAATTAGGTA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATAAGCAAAACACTAATACACATAAATAAGTCTAAAAATTAGGTA  639

seq1  TTAAGAGCATTGTTTCCTAAGCCATGTAAGACGTTTTGGGTCTATGATCC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGCATTGTTTCCTAAGCCATGTAAGACGTTTTGGGTCTATGATCC  689

seq1  TAGTCTAGGAAGCTTAGCAGGAGATTTCCAGTGTAAAGGACAACATAGGT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTAGGAAGCTTAGCAGGAGATTTCCAGTGTAAAGGACAACATAGGT  739

seq1  TACATAGGAAAATTCAGGCCAGCCTGACCTACATAGTGAGACCATATCTC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGGAAAATTCAGGCCAGCCTGACCTACATAGTGAGACCATATCTC  789

seq1  AAAGACAAATTATTGTCTTCTAAGAAAGCTCATGCAACATTCAATTACAG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAATTATTGTCTTCTAAGAAAGCTCATGCAACATTCAATTACAG  839

seq1  ATAATTTAAAATAGATTCTTTGGGATCTGAGTTTCATTCTCTCACTGGTT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTAAAATAGATTCTTTGGGATCTGAGTTTCATTCTCTCACTGGTT  889

seq1  AGTAAAGTTGTCTTTCACTTTCAGTTACATAATTCATTTTATAAAAATCA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGTTGTCTTTCACTTTCAGTTACATAATTCATTTTATAAAAATCA  939

seq1  GTGAGGGGACTGGAGAGATGATTCATCAGTTAAGAACACTGGTTCCCTTC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGGACTGGAGAGATGATTCATCAGTTAAGAACACTGGTTCCCTTC  989

seq1  CAGAGATCTGAGATTGGATTCCCAGTATCCACAAGGTGGCTCACAACCTA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCTGAGATTGGATTCCCAGTATCCACAAGGTGGCTCACAACCTA  1039

seq1  TAACTCCAGTTCCAAGGGATTCAATGCCTTCATCTGGCCTCCTTCAGGTA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCAGTTCCAAGGGATTCAATGCCTTCATCTGGCCTCCTTCAGGTA  1089

seq1  CAAGGCATACAAGTTGTGTGCATACACACATGCAAGCAAAGCAACCATAC  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCATACAAGTTGTGTGCATACACACATGCAAGCAAAGCAACCATAC  1139

seq1  CCATAAAATAAAATTTTAAAAAAGTAATAAGGGTTACATTAAAGAATTC  1185
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAATAAAATTTTAAAAAAGTAATAAGGGTTACATTAAAGAATTC  1188