BAC Information

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BAC

Clone NameB6Ng01-146G20
ChromosomeX (Build37)
Map Location 104,401,169 - 104,402,105
singlet/doubletsinglet
Overlap genenone
Upstream geneTaf9b, 5031408O05Rik, EG333563, LOC622494, Gm784, Cysltr1, EG331493, LOC668490, LOC100042772, LOC100043263, Zcchc5, Gpr23, P2ry10, A630033H20Rik
Downstream geneGpr174, LOC668502, LOC622613, LOC385404, Itm2a, 4933401B06Rik, Tbx22, 2610002M06Rik, Gm732
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146G20.bB6Ng01-146G20.g
ACCDH943574DH943575
length1,076942
definitionDH943574|Mus musculus domesticus DNA, BAC clone: B6Ng01-146G20, 5' end.DH943575|Mus musculus domesticus DNA, BAC clone: B6Ng01-146G20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggaaaatatcaacagtcgaccagaccctctggatcagcatgt
tgtcttggtaaggcattaaaaacatttgctattttctgctctccaggata
gcctagcatgttataaatgtaatgaacaaacacaatgatttatgagggat
atcaacataatcttagtcaggcctagttaatatttcaacatacaggaaag
attttgtagctttagcaccagaatctaataggtgaatgcaaactgttttt
tattttctttgaaggtagaaatgaaggaaaagggaagagatttctacaga
aattattctatattagcttttaaagtctgtgtttatttttttcttttctt
ttctttttcttattgggtattttctttatttacttttcaaatgttatccc
ctttcctagtttcccctttgaaacccctccccatcccccccctgcttacc
aacccatctactcctgcttcctggccctggcattccactatactggggca
tagaaccttcacaggaccaagggtctctcctcccattagtgaccaactat
tccatcctctgctacatgtgcagctagattcatgagtcccaccatgtatt
ttgtttggttggtggttccacagagctctgggggtactgtttttttttcc
atattgttgttcctcttatggggatgacaaccccttcagctccttgggtc
ctttctctagctccttcatttgggaccctgtgctcagtccaatggatgac
tgtgagtatcaaattctgtatttgtcaggcactggcaaagcctctcagga
ggcagctatatcaggctcctgtcagcaagcactttgttggcatccacaat
agtgtctggttttggtagttgataaggagatggatccccaggtggggcag
tcttctgcatggtgattctttcagtctctactttaaattttgtctctgta
attcctcccatggagtatttagttccccttctaagaggaacagagttatc
taccacttggtcttcttgtcttgagtttttgtagtgtgaatttgattttg
gggatcctgagctctcggcctagtac
gaattctccattaaaattcatagcccattttcaaaataagtgatttgtgg
tttgtttgtttgttttgactctctgttttctagttctttatatattttga
actttaattctctgtcagatgcacaactcataaatattctctcattctct
ttgatcccctttcatttgatagattggttacttagccgtgcaggattttt
ttttttttttttatgttattgggtcccacttatcagtcgctggccttaat
tcctgatcaaatgaaattttatttagaaagtccttttatacacctatatc
ttgtttgattcgatgtttcaaccttttggtgagatagggattctctgtgt
agcactgactgtcctggaacttgctcagtagaccaggctggccttgaact
cagagatctgcctgcctgtgccttccaagtgctgggattaaagacattta
ttactgctggcccactatatttctatctttttactgaagttgtgaattgt
ctctgttattcattcagctgtgtttgtggaggtattttcccaccacacag
gaatttattgttcttctctttaaattcattgagctgtttttccatgtgtc
acttacacagctcaaatttgatgaactttatgattcttcttttaatgtgt
cctgcagttttgtctagataattctcgctaatgaacatttctataggact
gacaaattttgaggtgtaagcatactgttttactgtttcatatatttttt
tattgtttttgcaacagacttgcgagcatgtggacttcttcattagttgt
tttgcctaatgtaaggttctaggctgcctctgttgagtgaaagctagctt
tttattttttgttgcagccaaagtgtggttgggtagggcttgtttctcac
tttccccagggttattttggattataggaattggggatgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_104401169_104402105
seq2: B6Ng01-146G20.g_68_1009

seq1  GAATTCTCCATTAAAATTCATAGCCCATTTTCAAAATAAGTGATTTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATTAAAATTCATAGCCCATTTTCAAAATAAGTGATTTGTGG  50

seq1  TTTGTTTGTTTGTTTTGACTCTCTGTTTTCTAGTTCTTTATATATTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTTGACTCTCTGTTTTCTAGTTCTTTATATATTTTGA  100

seq1  ACTTTAATTCTCTGTCAGATGCACAACTCATAAATATTCTCTCATTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAATTCTCTGTCAGATGCACAACTCATAAATATTCTCTCATTCTCT  150

seq1  TTGATCCCCTTTCATTTGATAGATTGGTTACTTAGCCGTGCAGGATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCCCTTTCATTTGATAGATTGGTTACTTAGCCGTGCAGGATTTTT  200

seq1  TTTTTTTTTTTTATGTTATTGGGTCCCACTTATCAGTCGCTGGCCTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTATGTTATTGGGTCCCACTTATCAGTCGCTGGCCTTAAT  250

seq1  TCCTGATCAAATGAAATTTTATTTAGAAAGTCCTTTTATACACCTATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATCAAATGAAATTTTATTTAGAAAGTCCTTTTATACACCTATATC  300

seq1  TTGTTTGATTCGATGTTTCAACCTTTTGGTGAGATAGGGATTCTCTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGATTCGATGTTTCAACCTTTTGGTGAGATAGGGATTCTCTGTGT  350

seq1  AGCACTGACTGTCCTGGAACTTGCTCAGTAGACCAGGCTGGCCTTGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGACTGTCCTGGAACTTGCTCAGTAGACCAGGCTGGCCTTGAACT  400

seq1  CAGAGATCTGCCTGCCTGTGCCTTCCAAGTGCTGGGATTAAAGACATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCTGCCTGCCTGTGCCTTCCAAGTGCTGGGATTAAAGACATTTA  450

seq1  TTACTGCTGGCCCACTATATTTCTATCTTTTTACTGAAGTTGTGAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTGGCCCACTATATTTCTATCTTTTTACTGAAGTTGTGAATTGT  500

seq1  CTCTGTTATTCATTCAGCTGTGTTTGTGGAGGTATTTTCCCACCACACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTATTCATTCAGCTGTGTTTGTGGAGGTATTTTCCCACCACACAG  550

seq1  GAATTTATTGTTCTTCTCTTTAAATTCATTGAGCTGTTTTTCCATGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATTGTTCTTCTCTTTAAATTCATTGAGCTGTTTTTCCATGTGTC  600

seq1  ACTTACACAGCTCAAATTTGATGAACTTTATGATTCTTCTTTTAATGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACACAGCTCAAATTTGATGAACTTTATGATTCTTCTTTTAATGTGT  650

seq1  CCTGCAG-TTTGTCTAGATAATTCTCGCTAATGAACATTTCTATAGGACT  699
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGTTTTGTCTAGATAATTCTCGCTAATGAACATTTCTATAGGACT  700

seq1  GACAAATTTTGAGGTGTAAGCATACTGTTTTACTGTTTCATATA-TTTTT  748
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GACAAATTTTGAGGTGTAAGCATACTGTTTTACTGTTTCATATATTTTTT  750

seq1  TAATGTTTTTGCAACAAGACTTGCGAGCATGTGGACTTCTTCATTAGTTG  798
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATTGTTTTTGCAAC-AGACTTGCGAGCATGTGGACTTCTTCATTAGTTG  799

seq1  -TTTGCCTAATGTAAGGTTCTAGGCTGCCTCTGTTGAGTGAAAGCTAGC-  846
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTTGCCTAATGTAAGGTTCTAGGCTGCCTCTGTTGAGTGAAAGCTAGCT  849

seq1  TTTTATTTTTTGTTGCAGCCAAAGTGTGTTTGGGTAGGTC-TGTTTCTCA  895
      |||||||||||||||||||||||||||| ||||||||| | |||||||||
seq2  TTTTATTTTTTGTTGCAGCCAAAGTGTGGTTGGGTAGGGCTTGTTTCTCA  899

seq1  CTTTCTCAGTGTTTATTTTGGATTATAGGAATT-GGGATGATT  937
      ||||| |   | ||||||||||||||||||||| ||||||| |
seq2  CTTTCCCCAGGGTTATTTTGGATTATAGGAATTGGGGATGAAT  942