BAC Information

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BAC

Clone NameB6Ng01-147F18
ChromosomeX (Build37)
Map Location 145,843,403 - 145,961,564
singlet/doubletdoublet
Overlap geneLOC100039934, LOC100039629
Upstream geneLOC666837, LOC100039553, LOC100034729, LOC666861, EG666864, LOC434866, EG666868, EG624260, LOC434865, EG624310, Ott, LOC666888, LOC100039598, LOC100039890, LOC100039612, EG666923, EG624378
Downstream geneLOC382243, EG666961, EG666968, OTTMUSG00000018988, LOC100039651, EG624568, LOC382244, LOC100039669, EG666982, EG624631, EG546387, LOC333588, Tmem29, LOC100040101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147F18.bB6Ng01-147F18.g
ACCDH944263DH944264
length1,1721,124
definitionDH944263|Mus musculus domesticus DNA, BAC clone: B6Ng01-147F18, 5' end.DH944264|Mus musculus domesticus DNA, BAC clone: B6Ng01-147F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,960,387 - 145,961,564)(145,843,403 - 145,844,533)
sequence
gaattccaagtttgtcagcttcaaggattttctgggatgttggaacactg
gtgaaggcttagctatgtcagaactcaatccttaaaggcacttatgataa
aatagtactaaaagagagcacatggatccatacaccagactaactccggg
atagggtatgagtatacgggctatgagaatgccaaggttccaggaggttg
agtttgcttgaaactctttgcctcatgagtgcttccagtcctctcagcct
gccaaacagacttcactggagtgtgcatagcagtccccagagtatcattt
cagtggtcccctgtcgccagagacacatccttcctctgtaggaaccatgc
cttcttgtaagttggccacaataaaatgcttcatcctaaccctcccctgc
caccccacggcccaggaatttcatttttcaaatctgcaagacaagatcta
gaaatcaactgtctttggaagatactgagttttcttacctgtctaaagct
gagttcaccaagaactgagaaaggctgcactcccaaagatacgacaaaca
tttcctctataacttacctgtctgaataatcaacccctttccactcttgc
tccctggttgtgattatccttttcctactcaccaagactgaatccactgt
ctacagctatagaaactgtttaagcaacaaaatgtactgagcattctagt
attgtaagaatcgtaccttctctgtacttgtagttacccatatatatttg
tagaaacacaaactgtgtttgaatatatcttcaagcttttattaattgta
tgttttgggtgaagttaaaagccaaaacaacacaaaagaaaacaccccct
tcctcgggtggtgtagagctcatgcacagctccgtgatatatcatttcac
tcagttgtgtgcacgtgatgctacaattcgttcccagtagtgccagaaac
aagcaacaaccagcaccagttcctcagtttcaatctatccttctgtaata
tggaaatggtagtatctacccacaaaggaattctaaggctagataaacca
tgaaataaaagtatttaaaagcttcaataatacaagtacctttgtttagg
tatttttcaaagtagaataagaaactatttttcaattcccattttttaaa
tttcctgggatctttggtagaa
gaattcaagaactggacagtctaaggcaggaacactgctgtagggtcaag
aacagtctgtgctctgtagtgagtaccagaccacccagggctatatagga
agatcttgcctcaaataaaataactgaacaaaaaactaaaaccagttctt
tctccttcaattttctctacctatagtaataatttatattttctcataag
gagtatttatatttttgacctagggggatatgataatatatttacataaa
atacaaaacatggagctgaagaaagggttcatcagttaaaagcacttgtt
tctcttgcattaggacattggttcagttttcaggatatccatatagagct
ccacacccttccattaactcatatatatataaaacatgcatacatataaa
atgaataaatttttaaaaattcaatcaaaaagtatattagcaagacgtta
tcaatgagaactggggaaatagctcaataaataaaatgcttgttggacca
gcatgaaaacaataatccatacccaatacccatgaaaaaccaagaatgac
tgtgcagggctcccatcacagagttactaaggtagaaaaaggacaatctc
tagaggatgctggctatccagattagacaaattgactacctccgtggtct
atagagagctcttgtctcaaaaaggaaagtgaagtccatcaagatagctc
atcaggtgaaggtaccttccatcaaacctgacaaccagagttccatcctt
tggacccatatggtagaaatggagaattgactcccacatacttgccttgg
cataggagcatgtgcactctcaagtgggtgcacacacacaaataaaaata
gaaactaaaaataataaaatgcataatacaaaaggaatgaggagagccac
ttgacattgaactctggccttcacacctgtacacaaatgcacacacagag
acatacccacacacatacataaggaccctactacatagtcagacacaaca
tatgtaggttaggtcttacaacattacaccatgcaacagactttagcttg
ttgtcatccagagggcagaaccatgactgatttgacagtctgtttggggt
agatttggtaagatagtaaatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_145960387_145961564
seq2: B6Ng01-147F18.b_49_1220 (reverse)

seq1  TTCTACCAAAGATACCAGGAGAATTTATAAAAATGGGAA-TGAGAAATAT  49
      ||||||||||||| |||||| |||||| ||||||||||| ||| ||||| 
seq2  TTCTACCAAAGATCCCAGGA-AATTTA-AAAAATGGGAATTGAAAAATA-  47

seq1  GTTTC-TATACTACCTTTGAAATATACCTAACCAAAGGTAACTTGTGATT  98
      ||||| ||| ||| |||||||| |||||||| ||||||| |||||| |||
seq2  GTTTCTTATTCTA-CTTTGAAAAATACCTAAACAAAGGT-ACTTGT-ATT  94

seq1  TAATTGAAAGCTCTAAATACTTTTATATCATGGTTTAATCTAGCCTTAGA  148
        ||||||   | ||||||||||||| ||||||||| |||||||||||||
seq2  --ATTGAAGCTTTTAAATACTTTTATTTCATGGTTT-ATCTAGCCTTAGA  141

seq1  ATTCCTTTGTGGGTAGATACTACCATTTCCATATTACAGAAGGATAGATT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTGTGGGTAGATACTACCATTTCCATATTACAGAAGGATAGATT  191

seq1  GAAACTGAGGAACTGGTGCTGGTTGTTGCTTGTTTCTGGCACTACTGGGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAGGAACTGGTGCTGGTTGTTGCTTGTTTCTGGCACTACTGGGA  241

seq1  ACGAATTGTAGCATCACGTGCACAC-ACTGAGTGAAATGATATATCACGG  297
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACGAATTGTAGCATCACGTGCACACAACTGAGTGAAATGATATATCACGG  291

seq1  AGCTGTGCATGAGCTCTACACCACCCGAGGAAGGGGGTGTTTTCTTTTGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGCATGAGCTCTACACCACCCGAGGAAGGGGGTGTTTTCTTTTGT  341

seq1  GTTGTTTTGGCTTTTAACTTCACCCAAAACATACAATTAATAAAAGCTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTGGCTTTTAACTTCACCCAAAACATACAATTAATAAAAGCTTG  391

seq1  AAGATATATTCAAACACAGTTTGTGTTTCTACAAATATATATGGGTAACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATATTCAAACACAGTTTGTGTTTCTACAAATATATATGGGTAACT  441

seq1  ACAAGTACAGAGAAGGTACGATTCTTACAATACTAGAATGCTCAGTACAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTACAGAGAAGGTACGATTCTTACAATACTAGAATGCTCAGTACAT  491

seq1  TTTGTTGCTTAAACAGTTTCTATAGCTGTAGACAGTGGATTCAGTCTTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCTTAAACAGTTTCTATAGCTGTAGACAGTGGATTCAGTCTTGG  541

seq1  TGAGTAGGAAAAGGATAATCACAACCAGGGAGCAAGAGTGGAAAGGGGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGGAAAAGGATAATCACAACCAGGGAGCAAGAGTGGAAAGGGGTT  591

seq1  GATTATTCAGACAGGTAAGTTATAGAGGAAATGTTTGTCGTATCTTTGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTCAGACAGGTAAGTTATAGAGGAAATGTTTGTCGTATCTTTGGG  641

seq1  AGTGCAGCCTTTCTCAGTTCTTGGTGAACTCAGCTTTAGACAGGTAAGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGCCTTTCTCAGTTCTTGGTGAACTCAGCTTTAGACAGGTAAGAA  691

seq1  AACTCAGTATCTTCCAAAGACAGTTGATTTCTAGATCTTGTCTTGCAGAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTATCTTCCAAAGACAGTTGATTTCTAGATCTTGTCTTGCAGAT  741

seq1  TTGAAAAATGAAATTCCTGGGCCGTGGGGTGGCAGGGGAGGGTTAGGATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAATGAAATTCCTGGGCCGTGGGGTGGCAGGGGAGGGTTAGGATG  791

seq1  AAGCATTTTATTGTGGCCAACTTACAAGAAGGCATGGTTCCTACAGAGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTTATTGTGGCCAACTTACAAGAAGGCATGGTTCCTACAGAGGA  841

seq1  AGGATGTGTCTCTGGCGACAGGGGACCACTGAAATGATACTCTGGGGACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTGTCTCTGGCGACAGGGGACCACTGAAATGATACTCTGGGGACT  891

seq1  GCTATGCACACTCCAGTGAAGTCTGTTTGGCAGGCTGAGAGGACTGGAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCACACTCCAGTGAAGTCTGTTTGGCAGGCTGAGAGGACTGGAAG  941

seq1  CACTCATGAGGCAAAGAGTTTCAAGCAAACTCAACCTCCTGGAACCTTGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATGAGGCAAAGAGTTTCAAGCAAACTCAACCTCCTGGAACCTTGG  991

seq1  CATTCTCATAGCCCGTATACTCATACCCTATCCCGGAGTTAGTCTGGTGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCATAGCCCGTATACTCATACCCTATCCCGGAGTTAGTCTGGTGT  1041

seq1  ATGGATCCATGTGCTCTCTTTTAGTACTATTTTATCATAAGTGCCTTTAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCCATGTGCTCTCTTTTAGTACTATTTTATCATAAGTGCCTTTAA  1091

seq1  GGATTGAGTTCTGACATAGCTAAGCCTTCACCAGTGTTCCAACATCCCAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGAGTTCTGACATAGCTAAGCCTTCACCAGTGTTCCAACATCCCAG  1141

seq1  AAAATCCTTGAAGCTGACAAACTTGGAATTC  1178
      |||||||||||||||||||||||||||||||
seq2  AAAATCCTTGAAGCTGACAAACTTGGAATTC  1172

seq1: chrX_145843403_145844533
seq2: B6Ng01-147F18.g_69_1192

seq1  GAATTCAAGAACTGGACAGTCTAAGGCAGGAACACTGCTGTAGGGTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAACTGGACAGTCTAAGGCAGGAACACTGCTGTAGGGTCAAG  50

seq1  AACAGTCTGTGCTCTGTAGTGAGTACCAGACCACCCAGGGCTATATAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTGTGCTCTGTAGTGAGTACCAGACCACCCAGGGCTATATAGGA  100

seq1  AGATCTTGCCTCAAATAAAATAACTGAACAAAAAACTAAAACCAGTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTGCCTCAAATAAAATAACTGAACAAAAAACTAAAACCAGTTCTT  150

seq1  TCTCCTTCAATTTTCTCTACCTATAGTAATAATTTATATTTTCTCATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCAATTTTCTCTACCTATAGTAATAATTTATATTTTCTCATAAG  200

seq1  GAGTATTTATATTTTTGACCTAGGGGGATATGATAATATATTTACATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTATATTTTTGACCTAGGGGGATATGATAATATATTTACATAAA  250

seq1  ATACAAAACATGGAGCTGAAGAAAGGGTTCATCAGTTAAAAGCACTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAACATGGAGCTGAAGAAAGGGTTCATCAGTTAAAAGCACTTGTT  300

seq1  TCTCTTGCATTAGGACATTGGTTCAGTTTTCAGGATATCCATATAGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGCATTAGGACATTGGTTCAGTTTTCAGGATATCCATATAGAGCT  350

seq1  CCACACCCTTCCATTAACTCATATATATATAAAACATGCATACATATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCCTTCCATTAACTCATATATATATAAAACATGCATACATATAAA  400

seq1  ATGAATAAATTTTTAAAAATTCAATCAAAAAGTATATTAGCAAGACGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAATTTTTAAAAATTCAATCAAAAAGTATATTAGCAAGACGTTA  450

seq1  TCAATGAGAACTGGGGAAATAGCTCAATAAATAAAATGCTTGTTGGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAGAACTGGGGAAATAGCTCAATAAATAAAATGCTTGTTGGACCA  500

seq1  GCATGAAAACAATAATCCATACCCAATACCCATGAAAAACCAAGAATGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAAACAATAATCCATACCCAATACCCATGAAAAACCAAGAATGAC  550

seq1  TGTGCAGGGCTCCCATCACAGAGTTACTAAGGTAGAAAAAGGACAATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGGGCTCCCATCACAGAGTTACTAAGGTAGAAAAAGGACAATCTC  600

seq1  TAGAGGATGCTGGCTATCCAGATTAGACAAATTGACTACCTCCGTGGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGATGCTGGCTATCCAGATTAGACAAATTGACTACCTCCGTGGTCT  650

seq1  ATAGAGAGCTCTTGTCTCAAAAAGGAAAGTGAAGTCCATCAAGATAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAGCTCTTGTCTCAAAAAGGAAAGTGAAGTCCATCAAGATAGCTC  700

seq1  ATCAGGTGAAGGTACCTTCCATCAAACCTGACAACCAGAGTTCCATCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTGAAGGTACCTTCCATCAAACCTGACAACCAGAGTTCCATCCTT  750

seq1  AGGACCCATATGGTAGAAATGGAGAATTGACTCCCACATACTTGCCTTGG  800
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCATATGGTAGAAATGGAGAATTGACTCCCACATACTTGCCTTGG  800

seq1  CATAGGAGCATGTGCACTCTCAAGTGGGTGCACACACACAAATAAAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGAGCATGTGCACTCTCAAGTGGGTGCACACACACAAATAAAAATA  850

seq1  GAAACTAAAAATAATAAAATGCATAATACAAAAGGAATGAGGAGAGCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAAAAATAATAAAATGCATAATACAAAAGGAATGAGGAGAGCCAC  900

seq1  TTGACATTGAACTCTGGCCTTCACACCTGTACACAAATGCACACACAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTGAACTCTGGCCTTCACACCTGTACACAAATGCACACACAGAG  950

seq1  ACATACCCACACACATACATAAGGACCCTACTACATAGTCAGACACAAAC  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACATACCCACACACATACATAAGGACCCTACTACATAGTCAGACAC-AAC  999

seq1  ATATGTAGGTTAGGTCTTACAACATTACACCATTGCAACAGACTTTAGC-  1049
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  ATATGTAGGTTAGGTCTTACAACATTACACCA-TGCAACAGACTTTAGCT  1048

seq1  TGTTGTCATCCAGAGGCCAGAAACTATGACTTGAATTTGAACAGTCTGTT  1099
      |||||||||||||||| ||| ||| ||||||   ||||| ||||||||||
seq2  TGTTGTCATCCAGAGGGCAG-AACCATGACT--GATTTG-ACAGTCTGTT  1094

seq1  TGGGGTTAGATTTTGTGTAGATAGTAGATGTT  1131
      ||||| ||||||| ||  |||||||| |||||
seq2  TGGGG-TAGATTTGGT-AAGATAGTAAATGTT  1124