This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
B6Ng01-147I23
Chromosome
X (Build37)
Map Location
161,733,859 - 161,734,321
singlet/doublet
singlet
Overlap gene
Glra2
Upstream gene
Pir
,
Figf
,
Piga
,
Asb11
,
Asb9
,
Mospd2
,
Fancb
,
LOC627045
Downstream gene
LOC100040753
,
Gemin8
,
Gpm6b
Link
Open Mouse BAC browser
Click to get alignment info.
name
Pir
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:69656
MGI:1916906
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Figf
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14205
MGI:108037
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Piga
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:18700
MGI:99461
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Asb11
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:68854
MGI:1916104
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Asb9
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:69299
MGI:1916549
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Mospd2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:76763
MGI:1924013
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Fancb
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:237211
MGI:2448558
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC627045
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:627045
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
Glra2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:237213
MGI:95748
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100040753
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100040753
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs
name
Gemin8
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:237221
MGI:2384300
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gpm6b
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14758
MGI:107672
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Pir
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130337
GeneID:69656
MGI:1916906
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: pirin
transcript_id
: NM_027153.2
name
Figf
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:6753873
GeneID:14205
MGI:108037
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: c-fos induced growth factor
transcript_id
: NM_010216.1
name
Piga
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:126273665
GeneID:18700
MGI:99461
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: phosphatidylinositol glycan anchor biosynthesis, class A
transcript_id
: NM_011081.2
name
Asb11
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:17105325
GeneID:68854
MGI:1916104
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: ankyrin repeat and SOCS box-containing protein 11
transcript_id
: NM_026853.1
name
Asb9
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142373912
GeneID:69299
MGI:1916549
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: ankyrin repeat and SOCS box-containing protein 9
transcript_id
: NM_027027.2
name
Mospd2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142356338
GeneID:76763
MGI:1924013
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: motile sperm domain containing 2
transcript_id
: NM_029730.2
name
Fancb
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:54020736
GeneID:237211
MGI:2448558
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: Fanconi anemia, complementation group B
transcript_id
: NM_175027.3
name
Glra2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142373644
GeneID:237213
MGI:95748
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: glycine receptor, alpha 2 subunit
transcript_id
: NM_183427.3
name
LOC100040753
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149272509
GeneID:100040753
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs
product
: similar to pol protein
transcript_id
: XM_001475185.1
name
Gemin8
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:125628630
GeneID:237221
MGI:2384300
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: gem (nuclear organelle) associated protein 8
transcript_id
: NM_146238.3
name
Gpm6b
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130376
GeneID:14758
MGI:107672
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: glycoprotein m6b
transcript_id
: NM_023122.2
name
Pir
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:51317401
CCDS:CCDS30520.1
GeneID:69656
MGI:1916906
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
codon_start
: 1
note
: iron-binding nuclear protein
product
: pirin
protein_id
: NP_081429.1
name
Figf
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6753874
CCDS:CCDS30521.1
GeneID:14205
MGI:108037
definition
GO_component
: GO:0005576 - extracellular region [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0008083 - growth factor activity [Evidence IDA] [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005172 - vascular endothelial growth factor receptor binding [Evidence TAS]
GO_process
: GO:0001525 - angiogenesis [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0008283 - cell proliferation [Evidence IDA]; GO:0007275 - development [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]
codon_start
: 1
product
: c-fos induced growth factor
protein_id
: NP_034346.1
name
Piga
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:126273666
CCDS:CCDS30522.1
GeneID:18700
MGI:99461
definition
EC_number
: 2.4.1.198
GO_component
: GO:0005789 - endoplasmic reticulum membrane [Evidence ISS]; GO:0000506 - glycosylphosphatidylinositol-N- acetylglucosaminyltransferase (GPI-GnT) complex [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0017176 - phosphatidylinositol N-acetylglucosaminyltransferase activity [Evidence ISS]; GO:0005515 - protein binding [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0006506 - GPI anchor biosynthesis [Evidence ISS] [Evidence IEA]; GO:0009893 - positive regulation of metabolism [Evidence ISS]
codon_start
: 1
note
: phosphatidylinositolglycan class A
product
: phosphatidylinositol glycan, class A
protein_id
: NP_035211.2
name
Asb11
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:17105326
CCDS:CCDS30523.1
GeneID:68854
MGI:1916104
definition
GO_component
: GO:0005575 - cellular_component [Evidence ND]
codon_start
: 1
product
: ankyrin repeat and SOCS box-containing protein 11
protein_id
: NP_081129.1
name
Asb9
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:21311897
CCDS:CCDS30524.1
GeneID:69299
MGI:1916549
definition
GO_component
: GO:0005575 - cellular_component [Evidence ND]
GO_process
: GO:0007242 - intracellular signaling cascade [Evidence IEA]
codon_start
: 1
product
: ankyrin repeat and SOCS box-containing protein 9
protein_id
: NP_081303.1
name
Mospd2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:110626072
GeneID:76763
MGI:1924013
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
codon_start
: 1
product
: motile sperm domain containing 2
protein_id
: NP_084006.1
name
Fancb
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:54020737
GeneID:237211
MGI:2448558
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_process
: GO:0006281 - DNA repair [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]
codon_start
: 1
product
: Fanconi anemia, complementation group B
protein_id
: NP_778192.2
name
Glra2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:34556195
GeneID:237213
MGI:95748
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IEA]
GO_function
: GO:0005254 - chloride channel activity [Evidence IEA]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0005230 - extracellular ligand-gated ion channel activity [Evidence IEA]; GO:0004890 - GABA-A receptor activity [Evidence IEA]; GO:0016934 - glycine-gated chloride channel activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]
GO_process
: GO:0006821 - chloride transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0007268 - synaptic transmission [Evidence IEA]; GO:0006810 - transport [Evidence IEA]
codon_start
: 1
product
: glycine receptor, alpha 2 subunit
protein_id
: NP_906272.1
name
LOC100040753
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149272510
GeneID:100040753
definition
codon_start
: 1
product
: similar to pol protein
protein_id
: XP_001475235.1
name
Gemin8
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31559907
GeneID:237221
MGI:2384300
definition
codon_start
: 1
product
: gem (nuclear organelle) associated protein 8
protein_id
: NP_666350.2
name
Gpm6b
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:12963495
CCDS:CCDS30526.1
GeneID:14758
MGI:107672
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
codon_start
: 1
product
: glycoprotein m6b
protein_id
: NP_075611.1
name
LOC627045
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:627045
definition
number
: 1
pseudo
: _no_value
name
LOC627045
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:627045
definition
number
: 2
pseudo
: _no_value
name
LOC627045
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:627045
definition
number
: 3
pseudo
: _no_value
name
LOC627045
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:627045
definition
number
: 4
pseudo
: _no_value
clone name
MSMg01-419A21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-363K12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-453E08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-058O17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-056M24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-312P09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-502M24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-198G23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-048E22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-202J04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-392O11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-058G20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-061I19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-478L14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-459N09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-066M07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-404K02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-498P19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-332F13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-067C24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-444P11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-377G15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-368J12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-324M18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-435K21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-119M23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-215K11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-290G01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-304L14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-112A10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-476L21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-544E05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-521L23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-304M08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-344F22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-052F20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-516D08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-400I22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-322O20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-271A05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-057E01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-161N13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-075L15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-064E16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-098D03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-183F03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-034H24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-022A20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-003B13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-253M22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-168C05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-234F01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-133L12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-214M10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-342N18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-034L06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-324C01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-262B18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-076N07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-242P06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-150L10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-209K21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-108N04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-329N16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-277O04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-011E14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-310K16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-147I23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-230C03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-113I22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-240G19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-288L19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-023G23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-292J12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-162N22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-149M07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-266N02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-181M13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-281K15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-201O06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-168J21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-020P18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-239J15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-064E03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-092K01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-198H14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-072P11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-308M04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-132D02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-145G15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-338H22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-028G01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-087P17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-004F22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-037J04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-291G24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-266I20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-209J11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-287B09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-151M16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-073D18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-170N23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-278D16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-113M21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-211A23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-103G01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-159H21
singlet/doublet
singlet
plural/unique
unique
