BAC Information

Click to search

BAC

Clone NameB6Ng01-147L09
ChromosomeX (Build37)
Map Location 148,448,535 - 148,575,720
singlet/doubletdoublet
Overlap geneRibc1, Smc1a, LOC100040394
Upstream geneGnl3l, Fgd1, Tsr2, LOC100040221, EG667027, Wnk3, LOC675278, ORF34, LOC623804, LOC100039760, Phf8, LOC385448, LOC237116, Huwe1, LOC675514, Hsd17b10
Downstream geneIqsec2, Jarid1c, 2900056M20Rik, Tspyl2, Gpr173, LOC207318, EG667113, EG635412, LOC635396, EG667130, Shroom2, Gpr143, LOC100039874, LOC667147, EG624124, Usp51, LOC635253, Mageh1, EG385454, EG436240, Rragb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147L09.bB6Ng01-147L09.g
ACCDH944512DH944513
length428492
definitionDH944512|Mus musculus domesticus DNA, BAC clone: B6Ng01-147L09, 5' end.DH944513|Mus musculus domesticus DNA, BAC clone: B6Ng01-147L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,575,288 - 148,575,720)(148,448,535 - 148,449,031)
sequence
tgtataaaaacaacagaaagaataaagtattaaaacataaaaaagagtgg
gtacaagggggaagaaggggactgggaggagtcagggaggaactgagagg
agtggagggagggaaaacttggtcaagatgtgttgaaaagaaaaataaat
taaaatatatgtataaaagtgtggtgaagcttaaaaactttctactaagt
gaaataaaccagtcacaaaagacaaatattgtatgatttcttttatatga
agttctaaaagagacaaatctatagacatggaaattagagtagcatcagt
agagctggggggggcgctgcagaagtgtctactaatgtgtttaggacctt
attgtaagggattagatcttttttttttttttttcttttttatttattta
tttatttattttattttttgtacactgt
accgttttttgtggtcacctgcaagagacctgtacaagaccggtaaaaga
gcaagccagtgaaccttccagcatggatggacgaggctcctttccagttg
aagagctattagaagttgatacctgccaaggaattgtcaattttcttgca
ggtgcatactatgcacatgtgggtaggaccaattggactctgaatcacaa
aaatgtgtgggatacgatggggctttagaggacagatgttgatatgaggg
tggatatgacccatattcattggtacatatatgaaagtataaaataaaaa
taaaaaactggccaggtgtggtggcacacgcctttaatcccagcacttgg
gaggcagaggcaggtgaatctcttgagtttgaggccagtctggtctacaa
agtgagttccaggacagttaggacaatgcagagaccctgctccccccccc
caaaaaagaagaaaaccaaatcaaccaaactacaacaaacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_148575288_148575720
seq2: B6Ng01-147L09.b_49_482 (reverse)

seq1  ACAGTGTAC-TTACATATAATAAATAAATAAATAAATAAAAAAGAAATAA  49
      |||||||||   | ||| ||||||||||||||||||||||||||||| ||
seq2  ACAGTGTACAAAAAATAAAATAAATAAATAAATAAATAAAAAAGAAAAAA  50

seq1  AAAAAAAAAAGATCTTATCCCTTCCAATAAGGTCCTATACACATTAGTAG  99
      ||||||||||||||| ||||||| ||||||||||||| ||||||||||||
seq2  AAAAAAAAAAGATCTAATCCCTTACAATAAGGTCCTAAACACATTAGTAG  100

seq1  ACACTTCTGCAGCGCCCCCCCCAGCTCTACTGATGCTACTCTAATTTCCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCTGCAGCGCCCCCCCCAGCTCTACTGATGCTACTCTAATTTCCA  150

seq1  TGTCTATAGATTTGTCTCTTTTAGAACTTCATATAAAAGAAATCATACAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATAGATTTGTCTCTTTTAGAACTTCATATAAAAGAAATCATACAA  200

seq1  TATTTGTCTTTTGTGACTGGTTTATTTCACTTAGTAGAAAGTTTTTAAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCTTTTGTGACTGGTTTATTTCACTTAGTAGAAAGTTTTTAAGC  250

seq1  TTCACCACACTTTTATACATATATTTTAATTTATTTTTCTTTTCAACACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCACACTTTTATACATATATTTTAATTTATTTTTCTTTTCAACACA  300

seq1  TCTTGACCAAGTTTTCCCTCCCTCCACTCCTCTCAGTTCCTCCCTGACTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACCAAGTTTTCCCTCCCTCCACTCCTCTCAGTTCCTCCCTGACTC  350

seq1  CTCCCAGTCCCCTTCTTCCCCCTTGTACCCACTCTTTTTTATGTTTTAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGTCCCCTTCTTCCCCCTTGTACCCACTCTTTTTTATGTTTTAAT  400

seq1  ACTTTATTCTTTCTGTTGTTTTTATACAGAATTC  433
      ||||||||||||||||||||||||||||||||||
seq2  ACTTTATTCTTTCTGTTGTTTTTATACAGAATTC  434

seq1: chrX_148448535_148449031
seq2: B6Ng01-147L09.g_71_568

seq1  GAATTCACAG-CAGCTGTGGTCACCTGCAAGAGACCTGTACAAGACCGGT  49
      |||||||| |     |||||||||||||||||||||||||||||||||||
seq2  GAATTCACCGTTTTTTGTGGTCACCTGCAAGAGACCTGTACAAGACCGGT  50

seq1  AAAAGAGCAAGCCAGTGAACCTTCCAGCATGGATGGACGAGGCTCCTTTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCAAGCCAGTGAACCTTCCAGCATGGATGGACGAGGCTCCTTTC  100

seq1  CAGTTGAAGAGCTATTAGAAGTTGATACCTGCCAAGGAATTGTCAATTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAAGAGCTATTAGAAGTTGATACCTGCCAAGGAATTGTCAATTTT  150

seq1  CTTGCAGGTGCATACTATGCACATGTGGGTAGGACCAATTGGACTCTGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGGTGCATACTATGCACATGTGGGTAGGACCAATTGGACTCTGAA  200

seq1  TCACAAAAATGTGTGGGATACGATGGGGCTTTAGAGGACAGATGTTGATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAAATGTGTGGGATACGATGGGGCTTTAGAGGACAGATGTTGATA  250

seq1  TGAGGGTGGATATGACCCATATTCATTGGTACATATATGAAAGTATAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTGGATATGACCCATATTCATTGGTACATATATGAAAGTATAAAA  300

seq1  TAAAAATAAAAAACTGGCCAGGTGTGGTGGCACACGCCTTTAATCCCAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAAAAACTGGCCAGGTGTGGTGGCACACGCCTTTAATCCCAGC  350

seq1  ACTTGGGAGGCAGAGGCAGGTGAATCTCTTGAGTTTGAGGCCAGTCTGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGGCAGAGGCAGGTGAATCTCTTGAGTTTGAGGCCAGTCTGGT  400

seq1  CTACAAAGTGAGTTCCAGGACAGTTAGGACAATGCAGAGACCCTGCTCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGTGAGTTCCAGGACAGTTAGGACAATGCAGAGACCCTGCTCCC  450

seq1  CCCCCCCAAAAAAGAAGAAAACCAAATCAACCAAACTACAACAAACAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCAAAAAAGAAGAAAACCAAATCAACCAAACTACAACAAACAG  498