BAC Information

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BAC

Clone NameB6Ng01-148H19
ChromosomeX (Build37)
Map Location 86,420,778 - 86,578,070
singlet/doubletdoublet
Overlap geneLOC667934
Upstream geneEG667883, LOC667891, EG245506, LOC667911, LOC100041707, EG436213, LOC667919, LOC100041727
Downstream genePet2, EG629419, 4932429P05Rik, LOC633246, Nanog-ps1, 4930415L06Rik, EG547215, Gm370
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148H19.bB6Ng01-148H19.g
ACCDH945084DH945085
length1,2141,060
definitionDH945084|Mus musculus domesticus DNA, BAC clone: B6Ng01-148H19, 5' end.DH945085|Mus musculus domesticus DNA, BAC clone: B6Ng01-148H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,576,852 - 86,578,070)(86,420,778 - 86,421,840)
sequence
gaattcaatatatgatttttttatttataaacacagggaaaatcaaattc
aggattatttaggttgcatttggaatctagtcctttgagaaatctagttc
ttggtggtttaagaaagaagagtgaatctagatatggtggttcatgaata
tatcctcaacattaaggatgatgaggcaggaggatggccatgactttaaa
gtcagcttggggtaaatggcgagttccaacctagtctgaatgctataacg
agacaaaataaagttggagaattgagtttttgctgactgccagtttgaag
tgccattgttgcttgaggtctctgaactcatgcacgtaaatttctatttt
tctgtgtcagaaattgaacattatattgaacatgcttagagtctctcctg
tttctcagaaagaaaacttttctctgtttagaaggagtcattcagttaca
ctgaacccatgcagacaaccccatactttgtatctatttttaaggtaagt
actgtaattttagttagatttgcaaacataattaaatttgacaatgtaat
ttcagttctagtgagctattacattgttgtgataaaactctgaccccaca
aaattggaaagtaaatggtttatttgatacataggtctaaatagcagtct
gtcatgaaaacaaggcaaatacctggagacagaagctgaagcagaggcca
ttgaagaacagttcttactgagtttctcaccatggctggctcggtttgct
ttcagatgcatcctaacatgacctgtccaaggatgtcactgcccatagtg
atctaggccaacccacattaaattatttaatcaaaaatttccacaaactc
acctaaaaataattttgatggaaacgtttcctcaattaaaggttcccttt
ttttcatatgaccaaagctatgccaaaattatatatataaaaaacaaaac
aaacaaaactaaccagcacattaattgggttcaagtataacaataattga
ttctttgtagaagtaattatttagtttatagaaaacccacagtgtagaaa
atgtctcccttggtaagttgtgcagaactgattaataaaagaaatttata
tcaccataatttcatgactttttcctttctctggctagtaaaattctgat
taacctgtgccttaagctatctagtacagtacttacctgtgtttatctga
aaaggtcaatgcaa
gaattctggatcttcacaaatcaattaaggcggtcagagttattattcaa
ctgaggttccctgttcaggtgacactaagttgtaacaagctggcctttaa
aatcaaccatcacacatgtggatctggttcattatggttttagttcaaat
tttcctgatgactatattacgaagggttttatcagcttattaacaatata
aataatttatttggatatgtttaaacattcactcatgattttttaaaaat
atgttcctctgtcatgagtgttaaagattgttatgcatactagaaacaag
tatgttaccagaaacatgattgacaaatacttttaaatctcttgaaagta
tgctttgcctttgtaggtttccttttaatctcagcctgtatttgcatgtg
aggtggtgggatataaaataaagcctaggaaaaagattaggccttaggag
ctagatagttttctatctgctaacactgggtacagtacaatctcctgcca
atcttcatgtagtatttagcaatctgttagcaattctgtttggcttcttt
gagctaagagttagttgccactcacctgatttttagtcatgagtgtatat
tttgtatagcttttgtcactgtaaggattggaataagacttgttggaact
ttttatttccctagcagaatccataagattttttgctctgtttttaaggt
aatttcatttatctgatgtgggattcacaaaacaattgcttaatggccca
caaaatttcctgacaaaattctaagtgaaaggagacagttttatatacaa
tgaatattaagctaaaatatgatgaaaagcaaagatatattacaagtctg
aaaatggttagaggaatggctcagtaagtgatatatttgtcactcaagca
agaagacctgagatcaaatcaccagaattcattgtaaaagcaaggagtag
ttacatagtctgtaatcaaagagtaatgttcaagatgagagattccaggc
aagtgtgtgtcccaggtagcctcatgcaaaagagaaaaaaggtctacacc
aaggtagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_86576852_86578070
seq2: B6Ng01-148H19.b_47_1260 (reverse)

seq1  TTGCTATTGAC--TTTCTGATAAACACAGCTGAGGTACTTGTACTAGTAT  48
      |||| ||||||  |||| ||||||||||| | | |||| ||||||||   
seq2  TTGC-ATTGACCTTTTCAGATAAACACAGGT-AAGTAC-TGTACTAGATA  47

seq1  GCTTAA-GCACAGTATAATCAGAATTTTTCCCTAGCCCAGAGAAAGAAAA  97
      |||||| ||||||  |||||||||||||   |||| ||||||||||  ||
seq2  GCTTAAGGCACAGGTTAATCAGAATTTT--ACTAG-CCAGAGAAAG-GAA  93

seq1  AAAGTCATGAAAATTATGGTGATTTAAATTTCTTTTATAAAATCAGTTCT  147
      ||||||||| ||||||||||||| ||||||||||||||  ||||||||| 
seq2  AAAGTCATG-AAATTATGGTGATATAAATTTCTTTTAT-TAATCAGTTC-  140

seq1  TGCACAAC-TACC-AGGGAGACATTTTCTACCACTGTGGGTTTTCTATAA  195
      |||||||| |||| |||||||||||||||| |||||||||||||||||||
seq2  TGCACAACTTACCAAGGGAGACATTTTCTA-CACTGTGGGTTTTCTATAA  189

seq1  ACTAAATAATTAC-TCTACAAAGAATCCAATTATTGTTATACTTGAACCC  244
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  ACTAAATAATTACTTCTACAAAGAAT-CAATTATTGTTATACTTGAACCC  238

seq1  AATTAATGTGCTGGTTAGTTTTGTTTGTTTTGTTTTTTTATATATATAAT  294
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AATTAATGTGCTGGTTAGTTTTGTTTGTTTTG-TTTTTTATATATATAAT  287

seq1  TTTGGCATAAGCTTTGGTCATATGAAAAAAAGGGAACC-TTAATTGAGGA  343
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  TTTGGCAT-AGCTTTGGTCATATGAAAAAAAGGGAACCTTTAATTGAGGA  336

seq1  AACGTTTCCATC-AAATTATTTTTAGGTGAGTTTGTGGAAATTTTTGATT  392
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AACGTTTCCATCAAAATTATTTTTAGGTGAGTTTGTGGAAATTTTTGATT  386

seq1  -AATAATTTAATGTGGGTTGGCCTAGATCACTATGGGCAGTGACATCCTT  441
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTAATGTGGGTTGGCCTAGATCACTATGGGCAGTGACATCCTT  436

seq1  GGACAGGTCATGTTAGGATGCATCTGAAAGCAAACCGAGCCAGCCATGGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGTCATGTTAGGATGCATCTGAAAGCAAACCGAGCCAGCCATGGT  486

seq1  GAGAAACTCAGTAAGAACTGTTCTTCAATGGCCTCTGCTTCAGCTTCTGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTCAGTAAGAACTGTTCTTCAATGGCCTCTGCTTCAGCTTCTGT  536

seq1  CTCCAGGTATTTGCCTTGTTTTCATGACAGACTGCTATTTAGACCTATGT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGTATTTGCCTTGTTTTCATGACAGACTGCTATTTAGACCTATGT  586

seq1  ATCAAATAAACCATTTACTTTCCAATTTTGTGGGGTCAGAGTTTTATCAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATAAACCATTTACTTTCCAATTTTGTGGGGTCAGAGTTTTATCAC  636

seq1  AACAATGTAATAGCTCACTAGAACTGAAATTACATTGTCAAATTTAATTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTAATAGCTCACTAGAACTGAAATTACATTGTCAAATTTAATTA  686

seq1  TGTTTGCAAATCTAACTAAAATTACAGTACTTACCTTAAAAATAGATACA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCAAATCTAACTAAAATTACAGTACTTACCTTAAAAATAGATACA  736

seq1  AAGTATGGGGTTGTCTGCATGGGTTCAGTGTAACTGAATGACTCCTTCTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGGGGTTGTCTGCATGGGTTCAGTGTAACTGAATGACTCCTTCTA  786

seq1  AACAGAGAAAAGTTTTCTTTCTGAGAAACAGGAGAGACTCTAAGCATGTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAAAAGTTTTCTTTCTGAGAAACAGGAGAGACTCTAAGCATGTT  836

seq1  CAATATAATGTTCAATTTCTGACACAGAAAAATAGAAATTTACGTGCATG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAATGTTCAATTTCTGACACAGAAAAATAGAAATTTACGTGCATG  886

seq1  AGTTCAGAGACCTCAAGCAACAATGGCACTTCAAACTGGCAGTCAGCAAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGAGACCTCAAGCAACAATGGCACTTCAAACTGGCAGTCAGCAAA  936

seq1  AACTCAATTCTCCAACTTTATTTTGTCTCGTTATAGCATTCAGACTAGGT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAATTCTCCAACTTTATTTTGTCTCGTTATAGCATTCAGACTAGGT  986

seq1  TGGAACTCGCCATTTACCCCAAGCTGACTTTAAAGTCATGGCCATCCTCC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCGCCATTTACCCCAAGCTGACTTTAAAGTCATGGCCATCCTCC  1036

seq1  TGCCTCATCATCCTTAATGTTGAGGATATATTCATGAACCACCATATCTA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCATCATCCTTAATGTTGAGGATATATTCATGAACCACCATATCTA  1086

seq1  GATTCACTCTTCTTTCTTAAACCACCAAGAACTAGATTTCTCAAAGGACT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACTCTTCTTTCTTAAACCACCAAGAACTAGATTTCTCAAAGGACT  1136

seq1  AGATTCCAAATGCAACCTAAATAATCCTGAATTTGATTTTCCCTGTGTTT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCAAATGCAACCTAAATAATCCTGAATTTGATTTTCCCTGTGTTT  1186

seq1  ATAAATAAAAAAATCATATATTGAATTC  1219
      ||||||||||||||||||||||||||||
seq2  ATAAATAAAAAAATCATATATTGAATTC  1214

seq1: chrX_86420778_86421840
seq2: B6Ng01-148H19.g_69_1128

seq1  GAATTCTGGATCTTCACAAATCAATTAAGGCGGTCAGAGTTATTATTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGATCTTCACAAATCAATTAAGGCGGTCAGAGTTATTATTCAA  50

seq1  CTGAGGTTCCCTGTTCAGGTGACACTAAGTTGTAACAAGCTGGCCTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTCCCTGTTCAGGTGACACTAAGTTGTAACAAGCTGGCCTTTAA  100

seq1  AATCAACCATCACACATGTGGATCTGGTTCATTATGGTTTTAGTTCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACCATCACACATGTGGATCTGGTTCATTATGGTTTTAGTTCAAAT  150

seq1  TTTCCTGATGACTATATTACGAAGGGTTTTATCAGCTTATTAACAATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGATGACTATATTACGAAGGGTTTTATCAGCTTATTAACAATATA  200

seq1  AATAATTTATTTGGATATGTTTAAACATTCACTCATGATTTTTTAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTATTTGGATATGTTTAAACATTCACTCATGATTTTTTAAAAAT  250

seq1  ATGTTCCTCTGTCATGAGTGTTAAAGATTGTTATGCATACTAGAAACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCTCTGTCATGAGTGTTAAAGATTGTTATGCATACTAGAAACAAG  300

seq1  TATGTTACCAGAAACATGATTGACAAATACTTTTAAATCTCTTGAAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTACCAGAAACATGATTGACAAATACTTTTAAATCTCTTGAAAGTA  350

seq1  TGCTTTGCCTTTGTAGGTTTCCTTTTAATCTCAGCCTGTATTTGCATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGCCTTTGTAGGTTTCCTTTTAATCTCAGCCTGTATTTGCATGTG  400

seq1  AGGTGGTGGGATATAAAATAAAGCCTAGGAAAAAGATTAGGCCTTAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTGGGATATAAAATAAAGCCTAGGAAAAAGATTAGGCCTTAGGAG  450

seq1  CTAGATAGTTTTCTATCTGCTAACACTGGGTACAGTACAATCTCCTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAGTTTTCTATCTGCTAACACTGGGTACAGTACAATCTCCTGCCA  500

seq1  ATCTTCATGTAGTATTTAGCAATCTGTTAGCAATTCTGTTTGGCTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCATGTAGTATTTAGCAATCTGTTAGCAATTCTGTTTGGCTTCTTT  550

seq1  GAGCTAAGAGTTAGTTGCCACTCACCTGATTTTTAGTCATGAGTGTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAAGAGTTAGTTGCCACTCACCTGATTTTTAGTCATGAGTGTATAT  600

seq1  TTTGTATAGCTTTTGTCACTGTAAGGATTGGAATAAGACTTGTTGGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATAGCTTTTGTCACTGTAAGGATTGGAATAAGACTTGTTGGAACT  650

seq1  TTTTATTTCCCTAGCAGAATCCATAAGATTTTTTGCTCTGTTTTTAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCCCTAGCAGAATCCATAAGATTTTTTGCTCTGTTTTTAAGGT  700

seq1  AATTTCATTTATCTGATGTGGGATTCACAAAACAATTGCTTAATGGCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATTTATCTGATGTGGGATTCACAAAACAATTGCTTAATGGCCCA  750

seq1  CAAAATTTCCTGACAAAATTCTAAGTGAAAGGAGACAGTTTTATTATACA  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAAATTTCCTGACAAAATTCTAAGTGAAAGGAGACAGTTTTA-TATACA  799

seq1  ATGAATATTAAGCTAAAATATGATGAAAAGCAAAGATATATTACAAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATTAAGCTAAAATATGATGAAAAGCAAAGATATATTACAAGTCT  849

seq1  GAAAATGGTTAGAGGAATGGCTCAGTAAGTGATATATTTGTCACTCAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGTTAGAGGAATGGCTCAGTAAGTGATATATTTGTCACTCAAGC  899

seq1  AGGAAGACCTGAGATCAAATCACCAGAATTCA-TGTAAAAGCAAGGAGTA  949
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGAAGACCTGAGATCAAATCACCAGAATTCATTGTAAAAGCAAGGAGTA  949

seq1  GTAACATAGGTCTGTAATCAAAGAGTAATGTTCAAGATGAGAGATTTCCA  999
      || ||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  GTTACATA-GTCTGTAATCAAAGAGTAATGTTCAAGATGAGAGA-TTCCA  997

seq1  GGCAAGTGTGTGTCCCAGGTAGCCTCATGCAAAAAGAGAAAACAGGTCTC  1049
      |||||||||||||||||||||||||||||| ||||||||||| |||||| 
seq2  GGCAAGTGTGTGTCCCAGGTAGCCTCATGC-AAAAGAGAAAAAAGGTCT-  1045

seq1  ACA-CAAGGTAGAAG  1063
      ||| |||||||||||
seq2  ACACCAAGGTAGAAG  1060