BAC Information

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BAC

Clone NameB6Ng01-148L04
ChromosomeX (Build37)X (Build37)
Map Location 122,841,862 - 122,842,872121,356,407 - 121,357,428
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG665522, LOC100038969, LOC100038978, EG665579, EG665611, EG626048, LOC100040410
Downstream geneLOC100039903, LOC665679, 4932411N23Rik, Gm381, LOC100040472, Gm382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148L04.bB6Ng01-148L04.g
ACCDH945233DH945234
length1,040987
definitionDH945233|Mus musculus domesticus DNA, BAC clone: B6Ng01-148L04, 5' end.DH945234|Mus musculus domesticus DNA, BAC clone: B6Ng01-148L04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(122,841,862 - 122,842,872)(121,356,407 - 121,357,428)
sequence
gaattcaaagatatataaaaatatcacccctatgatgaagtagagttcat
tttacatatgcagggatggatcaacatacaaatttctttcactgtaatct
accatgtaagcaaactaaaaggaaaaaataccacacgattatcatattca
atgttgaagaagactccaacaaaatccaacactccttgatgataaattct
taaagagatgagggatacatgtcacatgcttgaacataataaagccaata
cattgaaagctgacttccaatatcaaattaaatggagagaaaaaatattc
cttaaaaagcaataatatggtaaaagtacatattctctgtatctattctg
tatagcacctaaagtttgaacaacaacaataaggaaaggaagaaaatcag
ggtatacaaattgaaaaggaaaaagtcaaactattgctattcagatacag
tagtataaataagtgacatgatgcaaaattaactgaaaataaacagtaga
cttcctataaacagtcagtctctcttcctattgatgccagataaggccat
cctctgctacatgtgcagctggagccatgggtccctccatgtgttttctt
tggttggagctttagttcctgggagctatgaggagtctggttggttgata
ttgttgtttttcctatgatattgcaaacctcttcagctccttctgtcctt
cccctaacttctacattggggtcccaaagctcattctgatggttgactgc
aagcatccacatctgtatcagtaaggatttggcaaagcctctcaggaaac
atctatatcaggctcctctcagcaagcttttgttggcatcagcaatagtg
cctgggcttggtgggctgcatatgggatatatccccatgtggggcagtct
ctggatgtcttttccttcagtctctgttccactcttttgtccctgtattt
ccctttcaacatgaacaatctgggtcaaaatttttgaaaatgggagtggg
acccatctcttcgacaggacccaattcctaaccttctgga
gaattctaggactgccagggctatacagagaaactcagtctcagaaaaaa
aaaaaaaaaagaaagagagaaaaatcccaaaacaaacaaacaaaaaaacc
taactcaaaacaaacaaacaaacaaacaaaaaaacccagccccccccaaa
aaatactaaaaaatcaaaaatcttaaaaaaaaaaccgttaaagcctaaaa
aaaaaaaaaaaaaaaaaccaaaccctgaaaaaccctaatatccttaaaaa
aaaaaaaatagaattacacaagaacccaaaaatgactctaaaactctgtt
ttgtttttgttcttgttgttattttgttgtgttttgttgaatttttggag
acagtgtttctctgtgtatccctggctgtcctagaattcactctgtagac
caggctggcttgaactaagtaatctactacctctgcctcccaagtgcttg
gattaaagcaagggccaccacttactggcaatcttaaaactcttaaactc
caaaaataaaaacttaaaattaaaaaaataaaacaaaacaaaacaaaaca
aaaaaaaaacctcaaagaaaaaaaaaataaataaaaccctaacaaaaaac
ttaaaaaataaaaacaaacccaaataaaaacagcctaaaatccttaaaaa
acacaaaaacaaaaacaaaaacataaaaaactccaaaaattcactaaaat
actgaaaaccaaaaaaaaaaaacctttaaacacttttcacaaaaccctta
aaaaaaaaaaaaacaataattctttaaaaataaaaaaatacacaggatcc
aaaactgaccctaaacctttttttctcttttttttttttggattttggtt
ttcgtggtttggaggtggtttctctgggatcctggctgcctagacctcac
ctctgtaacaggctggctgactaagtatccactaccctctgcctcccagt
gctggataaagcaaggccaccattactggcatcttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_122841862_122842872
seq2: B6Ng01-148L04.b_43_1052

seq1  GAATTCAAAGATATATAAAAAATATCATGCCTATGATGAAGTAGACTTCA  50
      |||||||||||||||| ||||||||||  |||||||||||||||| ||||
seq2  GAATTCAAAGATATAT-AAAAATATCACCCCTATGATGAAGTAGAGTTCA  49

seq1  TTTTACATATGCAGGGATGGATCAACATACAAAACTCTTTCACTGTAATC  100
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  TTTTACATATGCAGGGATGGATCAACATACAAATTTCTTTCACTGTAATC  99

seq1  TACCATGTAAGCAAACTAAAAGGAAAAAAATACCACAAGATTATCATATT  150
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  TACCATGTAAGCAAACTAAAAGG-AAAAAATACCACACGATTATCATATT  148

seq1  TAATGTTGAAGAAGACTCCAACAAAATCCAACACTCCTTGGTGACAAATT  200
       ||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  CAATGTTGAAGAAGACTCCAACAAAATCCAACACTCCTTGATGATAAATT  198

seq1  CTTAAAGAGATGAGGGATACATGTCACATGCTTGAACATAATAAAGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGAGATGAGGGATACATGTCACATGCTTGAACATAATAAAGCCAA  248

seq1  TACATTGAAAGCTGACATCCAATATCAAATTAAATGGAGAGAAAAGAAAA  300
      |||||||||||||||| ||||||||||||||||||||||||||   ||||
seq2  TACATTGAAAGCTGACTTCCAATATCAAATTAAATGGAGAGAA---AAAA  295

seq1  TATTCCCTAAAAAGC---AATATGGTAAAAGTATATATTCCCTGTATCTA  347
      |||||| ||||||||   ||||||||||||||| |||||| |||||||||
seq2  TATTCCTTAAAAAGCAATAATATGGTAAAAGTACATATTCTCTGTATCTA  345

seq1  TTCTGTATAGGACCTGAAGTTTTAGCAACAACGATAAGGAAAGGAAGAAG  397
      |||||||||| |||| |||||| | ||||||| |||||||||||||||| 
seq2  TTCTGTATAGCACCTAAAGTTTGAACAACAACAATAAGGAAAGGAAGAAA  395

seq1  ATCAAGGTATACAAATTGAAAAGGAAAAAGTCAAACTATTTCTATTCAGA  447
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCAGGGTATACAAATTGAAAAGGAAAAAGTCAAACTATTGCTATTCAGA  445

seq1  TACAGTAGTATACATAAGTGACATGATGCAAAATTAACTGAAAATAAACA  497
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TACAGTAGTATAAATAAGTGACATGATGCAAAATTAACTGAAAATAAACA  495

seq1  GTAGACTTCCTATAAA----CAGTCTCCCTTCCTATTGATTCCAGATAAG  543
      ||||||||||||||||    ||||||| |||||||||||| |||||||||
seq2  GTAGACTTCCTATAAACAGTCAGTCTCTCTTCCTATTGATGCCAGATAAG  545

seq1  GCCATCCTCTGCTACATGTGTAGCTGGAGCCATGGGTCCCTCCATGTGTT  593
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCCATCCTCTGCTACATGTGCAGCTGGAGCCATGGGTCCCTCCATGTGTT  595

seq1  TTCTTTGGTTGGAGCTTTAGTTCCTGGGAGCTCTGATGAGTCTGGTTGTT  643
      |||||||||||||||||||||||||||||||| ||| ||||||||||| |
seq2  TTCTTTGGTTGGAGCTTTAGTTCCTGGGAGCTATGAGGAGTCTGGTTGGT  645

seq1  TGATATTGTTGTTTTTCCTATGATATTGCAAACCTCTTCAGCTCCTTCAG  693
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGATATTGTTGTTTTTCCTATGATATTGCAAACCTCTTCAGCTCCTTCTG  695

seq1  TCCTTCCCCTAACTTCTACATTGGGGTCCCAAAGCTCATTCTGATGGTTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCCTAACTTCTACATTGGGGTCCCAAAGCTCATTCTGATGGTTG  745

seq1  ACTGCAAGCATCCACATCTGTATCAGTAAGGATTTGGCAAAGCCTCTCAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAGCATCCACATCTGTATCAGTAAGGATTTGGCAAAGCCTCTCAG  795

seq1  GAAACATCTATATCAGGCTCCTCTCAGCAAGCATTTGTTGGCATCAGCAA  843
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAAACATCTATATCAGGCTCCTCTCAGCAAGCTTTTGTTGGCATCAGCAA  845

seq1  TAGTGCCTGGCCTTGGT-GGCTCCATATGGGATATATCCCCATGTGGGGC  892
      |||||||||| |||||| |||| |||||||||||||||||||||||||||
seq2  TAGTGCCTGGGCTTGGTGGGCTGCATATGGGATATATCCCCATGTGGGGC  895

seq1  AGTCTCTGGACTCTGGACGGCTTTTCCTTCAGTCTCTGCTCCACTC-TTT  941
      |||       ||||||| | |||||||||||||||||| ||||||| |||
seq2  AGT-------CTCTGGATGTCTTTTCCTTCAGTCTCTGTTCCACTCTTTT  938

seq1  GTCCCTGTATTTCC--TTTAACATGAACAATTCTGGATCAATATTTTTGA  989
      ||||||||||||||  || ||||||||||| ||||| |||| ||||||||
seq2  GTCCCTGTATTTCCCTTTCAACATGAACAA-TCTGGGTCAAAATTTTTGA  987

seq1  AAATGGTAGT-GGACCCATCTCT  1011
      |||||| ||| ||||||||||||
seq2  AAATGGGAGTGGGACCCATCTCT  1010

seq1: chrX_121356407_121357428
seq2: B6Ng01-148L04.g_68_1054 (reverse)

seq1  TTAAGATTGCCAGTAAGTGGTGGCCCTTGCTTTAATCCAAGCACTTGGGA  50
      |||||| ||||||||| |||||| ||||||||| |||| ||||| |||||
seq2  TTAAGA-TGCCAGTAA-TGGTGG-CCTTGCTTT-ATCC-AGCAC-TGGGA  44

seq1  GGCAGA-GGTAGTGGATTACTTAGTTCAAGCCAGCCTGGTTTACAGA-GT  98
      |||||| ||||||||| ||||||||   ||||||||||  ||||||| ||
seq2  GGCAGAGGGTAGTGGA-TACTTAGT--CAGCCAGCCTG--TTACAGAGGT  89

seq1  GAGTTTTAGGACAGCCAGGGATACACAGAGAAACCCAACCTCAAAAACAA  148
      ||| | |||| |||||| |||| | ||||||||||  ||||| |    ||
seq2  GAGGTCTAGG-CAGCCA-GGAT-CCCAGAGAAACC--ACCTCCA----AA  130

seq1  ACAAAAAAACAAAAATCAAAAAAAAAAAAAAAAGAAGAAAAAAAAAAGAG  198
       ||  ||||| |||||| ||||||||||      |||| ||||||   ||
seq2  CCACGAAAACCAAAATCCAAAAAAAAAA------AAGAGAAAAAA---AG  171

seq1  TTTTAGGGTCAGTTTTGGATCCTTGTGTATTTTTTTTATTTTTTAAAGAA  248
       ||||||||||||||||||||| |||||||||||||   |||||||||||
seq2  GTTTAGGGTCAGTTTTGGATCC-TGTGTATTTTTTT--ATTTTTAAAGAA  218

seq1  TTTATTTGTTTTTTTTTTTTTTAAGGGTTTTGTGAAGAGTGTTTTAAAGG  298
      ||   ||||||||||||||||||||||||||||||| |||| ||||||||
seq2  TT--ATTGTTTTTTTTTTTTTTAAGGGTTTTGTGAAAAGTG-TTTAAAGG  265

seq1  TTTTTTTTTTTTTGGTTTTCAGTATTTTAGTGAATTTTTGGAGTTTTTTA  348
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTTTTTTTTTGGTTTTCAGTATTTTAGTGAATTTTTGGAGTTTTTTA  314

seq1  TGTTTTTTGTTTTTGTTTTTGTGTTTTTTAAGGATTTTAGGCTGTTTTTA  398
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TTTTTGTTTTTGTTTTTGTGTTTTTTAAGGATTTTAGGCTGTTTTTA  363

seq1  TTTGGGTTTGTTTTTATTTTTTAAGTTTTTTGTTAGGGTTTTATTTATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTTTGTTTTTATTTTTTAAGTTTTTTGTTAGGGTTTTATTTATTT  413

seq1  TTTTTTTCTTTGAGGTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTATTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTGAGGTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTATTTT  463

seq1  TTTAATTTTAAGTTTTTATTTTTGGAGTTTAAGAGTTTTAAGATTGCCAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTAAGTTTTTATTTTTGGAGTTTAAGAGTTTTAAGATTGCCAG  513

seq1  TAAGTGGTGGCCCTTGCTTTAATCCAAGCACTTGGGAGGCAGAGGTAGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGTGGCCCTTGCTTTAATCCAAGCACTTGGGAGGCAGAGGTAGTA  563

seq1  GATTACTTAGTTCAAGCCAGCCTGGTCTACAGAGTGAATTCTAGGACAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTTAGTTCAAGCCAGCCTGGTCTACAGAGTGAATTCTAGGACAGC  613

seq1  CAGGGATACACAGAGAAACACTGTCTCCAAAAATTCAACAAAACACAACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATACACAGAGAAACACTGTCTCCAAAAATTCAACAAAACACAACA  663

seq1  AAATAACAACAAGAACAAAAACAAAACAGAGTTTTAGAGTCATTTTTGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACAACAAGAACAAAAACAAAACAGAGTTTTAGAGTCATTTTTGGG  713

seq1  TTCTTGTGTAATTCTATTTTTTTTTTTTTAAGGATATTAGGGTTTTTCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGTAATTCTATTTTTTTTTTTTTAAGGATATTAGGGTTTTTCAG  763

seq1  GGTTTGGTTTTTTTTTTTTTTTTTTTTTAGGCTTTAACGGTTTTTTTTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGTTTTTTTTTTTTTTTTTTTTTAGGCTTTAACGGTTTTTTTTTT  813

seq1  AAGATTTTTGATTTTTTAGTATTTTTTGGGGGGGGCTGGGTTTTTTTGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTTGATTTTTTAGTATTTTTTGGGGGGGGCTGGGTTTTTTTGTT  863

seq1  TGTTTGTTTGTTTGTTTTGAGTTAGGTTTTTTTGTTTGTTTGTTTTGGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGTTTTGAGTTAGGTTTTTTTGTTTGTTTGTTTTGGGA  913

seq1  TTTTTCTCTCTTTCTTTTTTTTTTTTTTTTCTGAGACTGAGTTTCTCTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCTCTTTCTTTTTTTTTTTTTTTTCTGAGACTGAGTTTCTCTGT  963

seq1  ATAGCCCTGGCTGTCCTAGAATTC  1022
      ||||||||||| ||||||||||||
seq2  ATAGCCCTGGCAGTCCTAGAATTC  987