BAC Information

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BAC

Clone NameB6Ng01-149D13
ChromosomeX (Build37)
Map Location 17,039,880 - 17,211,854
singlet/doubletdoublet
Overlap geneFundc1, EG278181
Upstream geneCypt6, LOC100038939, LOC668993, Maoa, Maob, Ndph, LOC100043063, Efhc2
Downstream geneEG668994, EG436196, EG331391, Dusp21, LOC100043951, Utx, LOC100043952, 4930578C19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149D13.bB6Ng01-149D13.g
ACCDH945619DH945620
length1,200964
definitionDH945619|Mus musculus domesticus DNA, BAC clone: B6Ng01-149D13, 5' end.DH945620|Mus musculus domesticus DNA, BAC clone: B6Ng01-149D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,210,633 - 17,211,854)(17,039,880 - 17,040,847)
sequence
gaattcatgctgcccctgattatcatgaagtcagtaatgttatcatggag
gacattccttgaaggaggaatgtaaaagtatgcacattattatacaaaca
aggcttatgcccacagcagccatagacacttatggaggcccacacctgct
ggtcttgtcccagggtcaggaatcaagtcattctgtccctaccaaggcca
tgccaggccatgcaagaaagggtagcctaaaactagggcaactgaggcaa
atagataaggagttctgtccttaaattttataatagctccagatgaatag
gaaatgtctatgtgagaagataagcctttaaacttctgtaagaaaacgta
gggcttctatagcaagacaggagaatgcagatcatcaaaggaaaaatcag
taagaccaactgaatggaaaagttccaaaggggctgggagaggagctcag
tgagagcacatgcttagcacgcacaaggcccaagtctaatgcctccacta
tcagatgaagtgcaaaatctctatacaaaggaaaaggctataaggatagt
aaagtcagaaactgtggaaaacataatcagatcaacataatgactagggt
tagtatacagaagtctgaagaacacctataaatcccaggaaaaggggatg
gtggataatagaaagcctgaatgatcaataaacatgaaagagcatgaaaa
gttgcttaatatataaaataaagcaagatataattttcacaaggttcata
agagttaaccagttcagacacagagttatgataaaaaagacttgttattc
ttttactaatcaaaatgtaagcaaaagcaaaaatgttgacaatttctagt
aagacagaataaggacacactctttttatcttacaaattttaatcaagcc
cagcatggtccacaggttcctataatgtcagaccttaggaggggaagaaa
ggagcatttcatgttctaagtttagtcaagactatatagtgagccctgtc
ttgaaaaaaaatgagagagagagttttcatttatattaaccagcgaaatg
gacagatgaacatttctttattaattaacccgaaaatgttaatttttagc
ctacctttcctatgatttgaattgaaatagccactgagctatgtgctatg
ttggtctcatctttttaataccactgaggctatgaatttaatagacacag

gaattctttcaattgaaagtgttagaaaattaagactcaagttacatgaa
gcacagagtataaattgtttgtttgcctctgaaccctatagagtagtcaa
aagaattaagttctctgaatgtccatgcttggatttctcaatgatctcaa
gatgagtcaacccctcagtacatcataaggactgagaaagcaaagaattc
ctcccatggaaaagaagaaaagtcgaattctgggcaggaaaacaacttat
gtttacttcaaagaatttgtttaaaattgttgcccacatttcccttgtta
gctacgaatcactttttgcagataaggaacaccagtacagttgtaacaag
ctccatcttgcctaattcttgtttcctgattccttccctgcatatggtat
ttagtatccattccaccgcatcttggagtcaaaacttaaaatcattacct
ctggtcagcatcaaattgccagactatctagatcaagcacctgggaaaat
gatgatctctatccataatccctaacctaatacacacatcaatattcacc
acttctgcaaaaaaaaaaaaaaaaactaggtgacacttaaaacatccacc
tcctacatctagtacacaacaacaatgatgcttattttctgtctctctac
tacccattttttaaatggtgttttcttattgcggtaagctttttagtaat
gttacaaatggccaacttactataatataactgtccttcttttcttactg
atgctgtgataaataccataactcaaagcaatttgggtaaaataaaaaat
aaaaagttgtatttggcttacaggttacaatcctcctgaaggggaaatgg
gcatgggctcacagctggaaccctgtaaatgggaattaaagcaaagagta
atgctgcctactaacttgctttctatggcttgctttctgtttctctttcc
ttcttcctccttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_17210633_17211854
seq2: B6Ng01-149D13.b_46_1245 (reverse)

seq1  CTGTGTCTATTAAAATATCTATGACCTTTCAGTGGTATTAAAAAAGAATG  50
      |||||||||||||   ||  ||  ||  ||||||||||||||||   |||
seq2  CTGTGTCTATTAA---ATTCATAGCC--TCAGTGGTATTAAAAA--GATG  43

seq1  AAGACAAAACATTTAACACATAGACCTTCAGTGGCTATTCTCAATTCAAA  100
       ||||  ||||  || |||||||    |||||||||||| ||||||||||
seq2  -AGAC-CAACA--TAGCACATAG---CTCAGTGGCTATT-TCAATTCAAA  85

seq1  TCATAAGAAAGGTAAGCCTTAAAAATTAAACATGTTTCCGGTTTAATTAA  150
      ||||| |||||||| ||  |||||||| ||||  ||| ||| ||||||||
seq2  TCATAGGAAAGGTAGGC--TAAAAATT-AACA--TTTTCGGGTTAATTAA  130

seq1  TACAAGAAATGTTCATCCTTGTCCATTTTCGCTTGTATATATAAATGAAA  200
      || ||||||||||||||  |||||| ||||||| ||  ||||||||||||
seq2  TA-AAGAAATGTTCATC--TGTCCA-TTTCGCTGGTTAATATAAATGAAA  176

seq1  ACTCTCTCTCTCATTTTTTTTTCAAGACAGGGCCTCACTATATAGTCTTG  250
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  ACTCTCTCTCTCA-TTTTTTTTCAAGACAGGG-CTCACTATATAGTCTTG  224

seq1  ACT-AACCTAGAACATGAAATGCTCCTTTCTTCCCCTCCTAAGGTCTGAC  299
      ||| ||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACTTAGAACATGAAATGCTCCTTTCTTCCCCTCCTAAGGTCTGAC  274

seq1  ATTATAGGAACCTGT-GACCATGCTGGGCTTGATTAAAATTTGTAAGAT-  347
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  ATTATAGGAACCTGTGGACCATGCTGGGCTTGATTAAAATTTGTAAGATA  324

seq1  AAAAGAGTGTGTTCTTATTCTGTCTTACTAGAAATTGTCAACATTTTTGC  397
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGTGTGTCCTTATTCTGTCTTACTAGAAATTGTCAACATTTTTGC  374

seq1  TTTTGCTTACATTTTGATTAGT-AAAGAATAACAAGTCTTTTTTATCATA  446
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTTGCTTACATTTTGATTAGTAAAAGAATAACAAGTCTTTTTTATCATA  424

seq1  ACTCTGTGTCTGAACTGGTTAACTCTTATGAACCTTGTGAAAATTATATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTGTCTGAACTGGTTAACTCTTATGAACCTTGTGAAAATTATATC  474

seq1  TTGCTTTATTTTATATATTAAGCAACTTTTCATGCTCTTTCATGTTTATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTATTTTATATATTAAGCAACTTTTCATGCTCTTTCATGTTTATT  524

seq1  GATCATTCAGGCTTTCTATTATCCACCATCCCCTTTTCCTGGGATTTATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTCAGGCTTTCTATTATCCACCATCCCCTTTTCCTGGGATTTATA  574

seq1  GGTGTTCTTCAGACTTCTGTATACTAACCCTAGTCATTATGTTGATCTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCTTCAGACTTCTGTATACTAACCCTAGTCATTATGTTGATCTGA  624

seq1  TTATGTTTTCCACAGTTTCTGACTTTACTATCCTTATAGCCTTTTCCTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTTCCACAGTTTCTGACTTTACTATCCTTATAGCCTTTTCCTTT  674

seq1  GTATAGAGATTTTGCACTTCATCTGATAGTGGAGGCATTAGACTTGGGCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAGATTTTGCACTTCATCTGATAGTGGAGGCATTAGACTTGGGCC  724

seq1  TTGTGCGTGCTAAGCATGTGCTCTCACTGAGCTCCTCTCCCAGCCCCTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCGTGCTAAGCATGTGCTCTCACTGAGCTCCTCTCCCAGCCCCTTT  774

seq1  GGAACTTTTCCATTCAGTTGGTCTTACTGATTTTTCCTTTGATGATCTGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTTTCCATTCAGTTGGTCTTACTGATTTTTCCTTTGATGATCTGC  824

seq1  ATTCTCCTGTCTTGCTATAGAAGCCCTACGTTTTCTTACAGAAGTTTAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTGTCTTGCTATAGAAGCCCTACGTTTTCTTACAGAAGTTTAAA  874

seq1  GGCTTATCTTCTCACATAGACATTTCCTATTCATCTGGAGCTATTATAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATCTTCTCACATAGACATTTCCTATTCATCTGGAGCTATTATAAA  924

seq1  ATTTAAGGACAGAACTCCTTATCTATTTGCCTCAGTTGCCCTAGTTTTAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGACAGAACTCCTTATCTATTTGCCTCAGTTGCCCTAGTTTTAG  974

seq1  GCTACCCTTTCTTGCATGGCCTGGCATGGCCTTGGTAGGGACAGAATGAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCTTTCTTGCATGGCCTGGCATGGCCTTGGTAGGGACAGAATGAC  1024

seq1  TTGATTCCTGACCCTGGGACAAGACCAGCAGGTGTGGGCCTCCATAAGTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCCTGACCCTGGGACAAGACCAGCAGGTGTGGGCCTCCATAAGTG  1074

seq1  TCTATGGCTGCTGTGGGCATAAGCCTTGTTTGTATAATAATGTGCATACT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGCTGCTGTGGGCATAAGCCTTGTTTGTATAATAATGTGCATACT  1124

seq1  TTTACATTCCTCCTTCAAGGAATGTCCTCCATGATAACATTACTGACTTC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTCCTCCTTCAAGGAATGTCCTCCATGATAACATTACTGACTTC  1174

seq1  ATGATAATCAGGGGCAGCATGAATTC  1222
      ||||||||||||||||||||||||||
seq2  ATGATAATCAGGGGCAGCATGAATTC  1200

seq1: chrX_17039880_17040847
seq2: B6Ng01-149D13.g_69_1032

seq1  GAATTCTTTCAATTGAAAGTGTTAGAAAATTAAGACTCAAGTTACATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAATTGAAAGTGTTAGAAAATTAAGACTCAAGTTACATGAA  50

seq1  GCACAGAGTATAAATTGTTTGTTTGCCTCTGAACCCTATAGAGTAGTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAGTATAAATTGTTTGTTTGCCTCTGAACCCTATAGAGTAGTCAA  100

seq1  AAGAATTAAGTTCTCTGAATGTCCATGCTTGGATTTCTCAATGATCTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAAGTTCTCTGAATGTCCATGCTTGGATTTCTCAATGATCTCAA  150

seq1  GATGAGTCAACCCCTCAGTACATCATAAGGACTGAGAAAGCAAAGAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTCAACCCCTCAGTACATCATAAGGACTGAGAAAGCAAAGAATTC  200

seq1  CTCCCATGGAAAAGAAGAAAAGTCGAATTCTGGGCAGGAAAACAACTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATGGAAAAGAAGAAAAGTCGAATTCTGGGCAGGAAAACAACTTAT  250

seq1  GTTTACTTCAAAGAATTTGTTTAAAATTGTTGCCCACATTTCCCTTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTTCAAAGAATTTGTTTAAAATTGTTGCCCACATTTCCCTTGTTA  300

seq1  GCTACGAATCACTTTTTGCAGATAAGGAACACCAGTACAGTTGTAACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACGAATCACTTTTTGCAGATAAGGAACACCAGTACAGTTGTAACAAG  350

seq1  CTCCATCTTGCCTAATTCTTGTTTCCTGATTCCTTCCCTGCATATGGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTTGCCTAATTCTTGTTTCCTGATTCCTTCCCTGCATATGGTAT  400

seq1  TTAGTATCCATTCCACCGCATCTTGGAGTCAAAACTTAAAATCATTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATCCATTCCACCGCATCTTGGAGTCAAAACTTAAAATCATTACCT  450

seq1  CTGGTCAGCATCAAATTGCCAGACTATCTAGATCAAGCACCTGGGAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAGCATCAAATTGCCAGACTATCTAGATCAAGCACCTGGGAAAAT  500

seq1  GATGATCTCTATCCATAATCCCTAACCTAATACACACATCAATATTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCTCTATCCATAATCCCTAACCTAATACACACATCAATATTCACC  550

seq1  ACTTCTGCAAAAAAAAAAAAAAAAACTAGGTGACACTTAAAACATCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGCAAAAAAAAAAAAAAAAACTAGGTGACACTTAAAACATCCACC  600

seq1  TCCTACATCTAGTACACAACAACAATGATGCTTATTTTCTGTCTCTCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACATCTAGTACACAACAACAATGATGCTTATTTTCTGTCTCTCTAC  650

seq1  TACCCATTTTTTAAATGGTGTTTTCTTATTGCGGTAAGCTTTTTAGTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATTTTTTAAATGGTGTTTTCTTATTGCGGTAAGCTTTTTAGTAAT  700

seq1  GTTACAAATGGCCAACTTACTATAATATAACTGTCCTTCTTTTCTTACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAAATGGCCAACTTACTATAATATAACTGTCCTTCTTTTCTTACTG  750

seq1  ATGCTGTGATAAATACCATAACTCAAAGCAATTTGGGTAAAATAAAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTGATAAATACCATAACTCAAAGCAATTTGGGTAAAATAAAAAAT  800

seq1  AAAAAGTTGTATTTGGCTTACAGGTTACAATCCTCCTGAAGGGGAAATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTGTATTTGGCTTACAGGTTACAATCCTCCTGAAGGGGAAATGG  850

seq1  GCATGGGCTCACAGCTGGAA-CCTGTAAATGGGAATTAAAGCAAAGAGTA  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCATGGGCTCACAGCTGGAACCCTGTAAATGGGAATTAAAGCAAAGAGTA  900

seq1  ATGCTGCTTACTAACTTGCTTTCTATGGCTTGCTTTCTTGTTTTCTTCTT  949
      ||||||| ||||||||||||||||||||||||||||| |||||   ||||
seq2  ATGCTGCCTACTAACTTGCTTTCTATGGCTTGCTTTC-TGTTT--CTCTT  947

seq1  TCCTTCCTTCCTTCCTTCC  968
      ||||| ||||| |||||||
seq2  TCCTT-CTTCC-TCCTTCC  964