BAC Information

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BAC

Clone NameB6Ng01-149L11
ChromosomeX (Build37)
Map Location 130,051,082 - 130,171,073
singlet/doubletdoublet
Overlap geneLOC100040794, Pcdh19
Upstream geneLOC665846, LOC665850, LOC665854
Downstream geneLOC100040831, Tnmd, Tspan6, Srpx2, Sytl4, LOC665889, Cstf2, Nox1, Xkrx, Arl13a, 4732479N06Rik, LOC100040849, Tmem35, Cenpi, Drp2, Taf7l, LOC669370, LOC674122, Timm8a1, Btk, Rpl36a, Gla, Hnrph2, LOC665936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149L11.bB6Ng01-149L11.g
ACCDH945979DH945980
length1,1791,106
definitionDH945979|Mus musculus domesticus DNA, BAC clone: B6Ng01-149L11, 5' end.DH945980|Mus musculus domesticus DNA, BAC clone: B6Ng01-149L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,169,880 - 130,171,073)(130,051,082 - 130,052,190)
sequence
gaattccagaccaattatctcagcatctttggtagttggtactttttaaa
aaaagttcctgaggcaatgctgatgtgcactgggagccgagaaacactct
ttcagatgtgtaaggtgtttcagttcattaccacaagatggttctttctc
aggttctttctatgtatcactctatactccaccagatgagtaaaaattga
ctgggtgtacaagaattagatttgagtatacacctggacccagtacttat
ttctttgtacacgtatatatatatagtatgttttcatgtgtgtgtagacc
tgacttcaatgtcagttgtcttcctcagttattctcttccacatagaggc
atgctcctcactgaacataaagatcatggtttcagctagtctggctagtt
agcatgatctgggtattctctgtatccaacccccaaaggattacagataa
gctgcttggcccacttggcttttgggtgggctcaggacatatagactcca
gtcttcatgcttgtacagtaaatgctttacctgctaaggcatctcctcat
gctgaactataattcttggtgcataaatatagaccaataataaaataagc
ctttgtgcctagttaactcagttgttctgaatgtagttctgaaaccagaa
tcatggattctgttctcatgtgaatgattctgctgtgttcttgcaattgc
agcccagctactttagggattgagactgattgtaaaggttaaagacaatg
gctgaattggaatagccccattcattctgagaaagttggttctagaattt
gtttattaggaggtagcacagtccgtctgctggtttggataatggaacac
ttacatttggagctcaggaatcacaagactgggatgttactcattaagcg
taaagaagaaggaagacagagaaagatgatgaagtttaatggcatttctc
tatcttgagtagcatgtcatatctgtacatctgtcaatggctggccatct
gtgaccttggtgagaagggagaatgtcaaagtcattataaccaggactct
agatttctttactactaacctcaatgaccacagaggatacctcatggtgt
atagatatcccttcggaattaaactagtactagtatatttgccaagatta
ttcttctcttctcaacatggtggtcttgc
gaattccacagagaacaatatttatattatgtttttagtgttcggataat
gtacctgagaaagagaagtcatcaattttaaactgatttcccacaaagaa
agtataggagaaatgtgctattaataatgttaagtcatttatggggctgg
tagaacagatggggtgcgggtgttaaaggaagcatccataagcaagtgag
aaactacagagaggtgtgaagaggtacctcaagtcttcccctatctgagg
gcttttgtgggcatctgtcagagtcgcatctgagacttccctaaggaaac
tgggaagtagaattttcagagcacacctaagggactcctggcacttactg
gaaagtaaaaaggaaagaattaacactaccatcccacaaaataccaggac
atcaattgccaaaattgggaggaagggccaaatgagaggttatctaatgg
aatttgttgttttccttcaactatgaagtactcaaaaatggtggagtctc
aagatgcatgtgccaaataggactccttacagtgtctgagtgcgggccaa
gactaattctaagcaatttatagcaacagaagtcactgcagtggaaagca
gtcacattctcattagccttgtcttcatttgtccagaacaccaatgcaag
gttttgagaccataccaggagcgaaatggtattgtagcatgtagctcttg
tagcatgctcaaagtctttgaacaatactcattcctggtagctttaagtc
atctgattaaaagggagatcatcaaattcccaatttgtaaattgtaaggt
ttgttttctcatctaaggtaatttggaaatcagagtcaaagcatgttttt
ctctgggatgggaagattattaacaagagtaataacaataataaataaca
aataagtttcatatggccagccacagagaaacttctaaaggaactcctat
atcccaatattcttcatgcatatatcaatatcatagtatacacaagtctg
cttacttttgttccaacttacctgatctaccagtgtttgatctttgattt
ggttatcaaatcagtagggtagaattagaaacagaaaattttccttcaac
accatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_130169880_130171073
seq2: B6Ng01-149L11.b_46_1224 (reverse)

seq1  GCAAGAACCACATGTTTGAGAAGAGAAGAATAATCTT-GCAAATATTACT  49
      |||||| |  |||| |||||||||||||||||||||| ||||||| ||||
seq2  GCAAGACCACCATG-TTGAGAAGAGAAGAATAATCTTGGCAAATA-TACT  48

seq1  AGTACTAGTTTTAATTCCGAAGGGAATAATCTATACCACCATGAGGTATC  99
      |||||||| ||||||||||||||||   ||||||| ||||||||||||| 
seq2  AGTACTAG-TTTAATTCCGAAGGGA--TATCTATA-CACCATGAGGTAT-  93

seq1  CCTCTTGTGGTCAATGA-GTTAGTAGTAGAGAAAATTCTAGAAGTCCTGG  148
      |||| |||||||| ||| |||||||||| |||||  ||||| ||||||||
seq2  CCTC-TGTGGTCATTGAGGTTAGTAGTAAAGAAA--TCTAG-AGTCCTGG  139

seq1  TTATAATGACTTTGACAATTCTCCCTTCTCACCAAGGTTCACAGATTGGC  198
      |||||||||||||||| |||||||||||||||||||| ||||||| ||||
seq2  TTATAATGACTTTGAC-ATTCTCCCTTCTCACCAAGG-TCACAGA-TGGC  186

seq1  CAGCCATTGACAGATGTAACAGATATGACATGCTACTCAAGATAGAGAAA  248
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAGCCATTGACAGATGT-ACAGATATGACATGCTACTCAAGATAGAGAAA  235

seq1  TGCCATTAAACTTCATCATCTTTCTCTGTCTTCCTTCTTCTTTACGCTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTAAACTTCATCATCTTTCTCTGTCTTCCTTCTTCTTTACGCTTA  285

seq1  ATGAGTAAACATCCCAGTCTTGTGATTCCTGAGCTCCAAATGTAAGTGTT  348
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGT-AACATCCCAGTCTTGTGATTCCTGAGCTCCAAATGTAAGTGTT  334

seq1  CCATTATCCAAACCAGCAGACGGACTGTGCTACCTCCTAATAAAACAAAT  398
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCATTATCCAAACCAGCAGACGGACTGTGCTACCTCCTAAT-AAACAAAT  383

seq1  TCTAGAACCAACTTTCTCAGAATGAATGGGGCTATTCCAATTCAGCCATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAACCAACTTTCTCAGAATGAATGGGGCTATTCCAATTCAGCCATT  433

seq1  GTCTTTAACCTTTACAATCAGTCTCAATCCCTAAAGTAGCTGGGCTGCAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAACCTTTACAATCAGTCTCAATCCCTAAAGTAGCTGGGCTGCAA  483

seq1  TTGCAAGAACACAGCAGAATCATTCACATGAGAACAGAATCCATGATTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGAACACAGCAGAATCATTCACATGAGAACAGAATCCATGATTCT  533

seq1  GGTTTCAGAACTACATTCAGAACAACTGAGTTAACTAGGCACAAAGGCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAGAACTACATTCAGAACAACTGAGTTAACTAGGCACAAAGGCTT  583

seq1  ATTTTATTATTGGTCTATATTTATGCACCAAGAATTATAGTTCAGCATGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTATTGGTCTATATTTATGCACCAAGAATTATAGTTCAGCATGA  633

seq1  GGAGATGCCTTAGCAGGTAAAGCATTTACTGTACAAGCATGAAGACTGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGCCTTAGCAGGTAAAGCATTTACTGTACAAGCATGAAGACTGGA  683

seq1  GTCTATATGTCCTGAGCCCACCCAAAAGCCAAGTGGGCCAAGCAGCTTAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATATGTCCTGAGCCCACCCAAAAGCCAAGTGGGCCAAGCAGCTTAT  733

seq1  CTGTAATCCTTTGGGGGTTGGATACAGAGAATACCCAGATCATGCTAACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATCCTTTGGGGGTTGGATACAGAGAATACCCAGATCATGCTAACT  783

seq1  AGCCAGACTAGCTGAAACCATGATCTTTATGTTCAGTGAGGAGCATGCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGACTAGCTGAAACCATGATCTTTATGTTCAGTGAGGAGCATGCCT  833

seq1  CTATGTGGAAGAGAATAACTGAGGAAGACAACTGACATTGAAGTCAGGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGGAAGAGAATAACTGAGGAAGACAACTGACATTGAAGTCAGGTC  883

seq1  TACACACACATGAAAACATACTATATATATATACGTGTACAAAGAAATAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACATGAAAACATACTATATATATATACGTGTACAAAGAAATAA  933

seq1  GTACTGGGTCCAGGTGTATACTCAAATCTAATTCTTGTACACCCAGTCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGGTCCAGGTGTATACTCAAATCTAATTCTTGTACACCCAGTCAA  983

seq1  TTTTTACTCATCTGGTGGAGTATAGAGTGATACATAGAAAGAACCTGAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTCATCTGGTGGAGTATAGAGTGATACATAGAAAGAACCTGAGA  1033

seq1  AAGAACCATCTTGTGGTAATGAACTGAAACACCTTACACATCTGAAAGAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCATCTTGTGGTAATGAACTGAAACACCTTACACATCTGAAAGAG  1083

seq1  TGTTTCTCGGCTCCCAGTGCACATCAGCATTGCCTCAGGAACTTTTTTTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCGGCTCCCAGTGCACATCAGCATTGCCTCAGGAACTTTTTTTA  1133

seq1  AAAAGTACCAACTACCAAAGATGCTGAGATAATTGGTCTGGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACCAACTACCAAAGATGCTGAGATAATTGGTCTGGAATTC  1179

seq1: chrX_130051082_130052190
seq2: B6Ng01-149L11.g_67_1172

seq1  GAATTCCACAGAGAACAATATTTATATTATGTTTTTAGTGTTCGGATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGAGAACAATATTTATATTATGTTTTTAGTGTTCGGATAAT  50

seq1  GTACCTGAGAAAGAGAAGTCATCAATTTTAAACTGATTTCCCACAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGAGAAAGAGAAGTCATCAATTTTAAACTGATTTCCCACAAAGAA  100

seq1  AGTATAGGAGAAATGTGCTATTAATAATGTTAAGTCATTTATGGGGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGGAGAAATGTGCTATTAATAATGTTAAGTCATTTATGGGGCTGG  150

seq1  TAGAACAGATGGGGTGCGGGTGTTAAAGGAAGCATCCATAAGCAAGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAGATGGGGTGCGGGTGTTAAAGGAAGCATCCATAAGCAAGTGAG  200

seq1  AAACTACAGAGAGGTGTGAAGAGGTACCTCAAGTCTTCCCCTATCTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACAGAGAGGTGTGAAGAGGTACCTCAAGTCTTCCCCTATCTGAGG  250

seq1  GCTTTTGTGGGCATCTGTCAGAGTCGCATCTGAGACTTCCCTAAGGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGTGGGCATCTGTCAGAGTCGCATCTGAGACTTCCCTAAGGAAAC  300

seq1  TGGGAAGTAGAATTTTCAGAGCACACCTAAGGGACTCCTGGCACTTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTAGAATTTTCAGAGCACACCTAAGGGACTCCTGGCACTTACTG  350

seq1  GAAAGTAAAAAGGAAAGAATTAACACTACCATCCCACAAAATACCAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAAAAAGGAAAGAATTAACACTACCATCCCACAAAATACCAGGAC  400

seq1  ATCAATTGCCAAAATTGGGAGGAAGGGCCAAATGAGAGGTTATCTAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTGCCAAAATTGGGAGGAAGGGCCAAATGAGAGGTTATCTAATGG  450

seq1  AATTTGTTGTTTTCCTTCAACTATGAAGTACTCAAAAATGGTGGAGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTGTTTTCCTTCAACTATGAAGTACTCAAAAATGGTGGAGTCTC  500

seq1  AAGATGCATGTGCCAAATAGGACTCCTTACAGTGTCTGAGTGCGGGCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCATGTGCCAAATAGGACTCCTTACAGTGTCTGAGTGCGGGCCAA  550

seq1  GACTAATTCTAAGCAATTTATAGCAACAGAAGTCACTGCAGTGGAAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATTCTAAGCAATTTATAGCAACAGAAGTCACTGCAGTGGAAAGCA  600

seq1  GTCACATTCTCATTAGCCTTGTCTTCATTTGTCCAGAACACCAATGCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATTCTCATTAGCCTTGTCTTCATTTGTCCAGAACACCAATGCAAG  650

seq1  GTTTTGAGACCATACCAGGAGCGAAATGGTATTGTAGCATGTAGCTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGACCATACCAGGAGCGAAATGGTATTGTAGCATGTAGCTCTTG  700

seq1  TAGCATGCTCAAAGTCTTTGAACAATACTCATTCCTGGTAGCTTTAAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGCTCAAAGTCTTTGAACAATACTCATTCCTGGTAGCTTTAAGTC  750

seq1  ATCTGATTAAAAGGGAGATCATCAAATTCCCAATTTGTAAATTGTAAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATTAAAAGGGAGATCATCAAATTCCCAATTTGTAAATTGTAAGGT  800

seq1  TTGTTTTCTCATCTAAGGTAATTTGGAAATCAGAGTCAAAGCATG-TTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTGTTTTCTCATCTAAGGTAATTTGGAAATCAGAGTCAAAGCATGTTTTT  850

seq1  CTCTGGGATGGGAAGATTATTAACAAGAGTAATAACAATAATAAATAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGATGGGAAGATTATTAACAAGAGTAATAACAATAATAAATAACA  900

seq1  AATAAGTTTCATATTGCCAGCCACAGAGAAACTTCTAAAGGAACTCCTAT  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATAAGTTTCATATGGCCAGCCACAGAGAAACTTCTAAAGGAACTCCTAT  950

seq1  ATCCCAATATTCTTCATGCATATATCAATATCATTAGTATACACAAGTCT  999
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  ATCCCAATATTCTTCATGCATATATCAATATCA-TAGTATACACAAGTC-  998

seq1  TGCTTACTTTTGTTCCAAACTACCTTGATCCTACCAGTGTTTGAATCTTT  1049
      ||||||||||||||||||  |||| |||| ||||||||||||| ||||||
seq2  TGCTTACTTTTGTTCCAACTTACC-TGAT-CTACCAGTGTTTG-ATCTTT  1045

seq1  GATTTGGTTATCAAATCAGTAGTG-AGATATAGAAACAGAAAATTTTACT  1098
      |||||||||||||||||||||| | |||  ||||||||||||||||| ||
seq2  GATTTGGTTATCAAATCAGTAGGGTAGAATTAGAAACAGAAAATTTTCCT  1095

seq1  TCAACACCATC  1109
      |||||||||||
seq2  TCAACACCATC  1106