BAC Information

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BAC

Clone NameB6Ng01-150H16
ChromosomeX (Build37)
Map Location 130,069,022 - 130,228,699
singlet/doubletdoublet
Overlap geneLOC100040794, Pcdh19
Upstream geneLOC665846, LOC665850, LOC665854
Downstream geneLOC100040831, Tnmd, Tspan6, Srpx2, Sytl4, LOC665889, Cstf2, Nox1, Xkrx, Arl13a, 4732479N06Rik, LOC100040849, Tmem35, Cenpi, Drp2, Taf7l, LOC669370, LOC674122, Timm8a1, Btk, Rpl36a, Gla, Hnrph2, LOC665936, LOC665941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150H16.bB6Ng01-150H16.g
ACCDH946549DH946550
length1,0401,057
definitionDH946549|Mus musculus domesticus DNA, BAC clone: B6Ng01-150H16, 5' end.DH946550|Mus musculus domesticus DNA, BAC clone: B6Ng01-150H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,069,022 - 130,070,058)(130,227,637 - 130,228,699)
sequence
gaattcagagcagttcagttcatggagttcagaagcagtctttctaagca
gagcaattcattcagaagccagacagaagccaatttgaattagtcagctt
ggagaagagtttgagtcagaacagctgagttgaactagctagccagagtt
cagacagtaaggctctgagacaacaatttacaactggcaaataaaagtta
tttttataaacaatctaagtcaacattgatcagaagaaatgccatttgca
tgagtagccctgttcacaagtacatagtacctgacacagacacatcttaa
atataaacaagaagggcaaaatcttatagtagattaagagcatgatgggt
tatgtgtttgaatactagtgttgcatatatatatatatatatatatatat
atatatatatatatatatatataatgcaactcacagttgcattataaact
gatatgtaggattttgtgcatgtgtgtagtcttaggcagaattatgatca
caggtaaaatttctctaaactctgaaacttatgaataaattacctaatgt
gatgaaaataacttagcaggtgtgatttaagtcaaagaatttaacatgtt
gaaaatatcccagattttctacgtggattttaacataatcaaggagtctc
tgatggtagaagaatgaagtaaaagagaaatgactacaaaataatagtca
gagaaatgcattgctacaagtttggagatagagaaaagaggtcatgaacc
aagaaaaaaaatcatctttctagaatctaagaggttaaagggggcaaata
taaattgattcttctcctaaatcatttacacaggaagaccatccctgcct
acgtcttgctcttgactcaaagacacatattccacataaacagatattca
aatgcgggataatagtcacatttgtctctagtttgaatgcttatagattg
gctttagctgtttgttgtctttcagttattaaatgtttcaatgaaacaga
atagtattagtataagtaaatttgtgctgtgtgtgtgtgt
gaattcacatgaaaagacagaggctgtaatgctgagagcccaaatggcgc
tgtcaaaacttcacaggtgatcactgcagggcagtgcagaaggtgttaga
gaacagtgtcatttattgaaatgtatctgctgatttagcctttgctaatt
aaatggtcctcatgatgtgtgtttatttagggacagttatgagtctggca
gcagcaggggtttggtcatgtgggaaacagaattcctaaagagagatggc
ataaggtttggggtcagggttggattaacttcttcagggatgttggcctt
gtcaaaattggaagacttggagtgattaatagcctttttcgtctccaccg
tccatgaccttttctgtatttcttggaaaaggcaaacattgggaccacag
tgagcaattttagcacttgagaatattttctgtattttgttgatgtccga
tgtcctgcaactcccactgtcactgtttccctctgtaacaaggcaagggt
gggtggggcttggcaggaagagaaaggaaaaagtaaagctgacctcaaca
tctttccttgcccccgcctctcatctttagttttcctggtgttccaaaag
agtcagaaacaggtatcatagtggaaaccacacctcattcctgctccaca
ggcccacatccctggctgttcctcttgttgcttttacctcaactgcctgg
gtcagtgagggtggaggaggggaagtcactccaaatgggatcatttgggg
tagaagggattcgaatttcagcaaactgtcaacataataaaccccacttt
agttctttctcaaggaatatttatagtgtatagaaactacatgctgttaa
tcaatttagtgaactgaagtttaatcttcacagggacaaggtccatcttt
agaaaactccgtactccctaacacattgctgggcacacagccagcactgt
gatttcacaggaagttggttgagtttgtgtaatgaggtcatctttggcaa
tcatgagctgctctgcaactgtgcttcacatctgcaagactttttaccct
ccatagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_130069022_130070058
seq2: B6Ng01-150H16.b_48_1087

seq1  GAATTCAGAGCAGTTCAGTTCATGGAGTTCAGAAGCAGTCTTTCTAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCAGTTCAGTTCATGGAGTTCAGAAGCAGTCTTTCTAAGCA  50

seq1  GAGCAATTCATTCAGAAGCCAGACAGAAGCCAATTTGAATTAGTCAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATTCATTCAGAAGCCAGACAGAAGCCAATTTGAATTAGTCAGCTT  100

seq1  GGAGAAGAGTTTGAGTCAGAACAGCTGAGTTGAACTAGCTAGCCAGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAGTTTGAGTCAGAACAGCTGAGTTGAACTAGCTAGCCAGAGTT  150

seq1  CAGACAGTAAGGCTCTGAGACAACAATTTACAACTGGCAAATAAAAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGTAAGGCTCTGAGACAACAATTTACAACTGGCAAATAAAAGTTA  200

seq1  TTTTTATAAACAATCTAAGTCAACATTGATCAGAAGAAATGCCATTTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATAAACAATCTAAGTCAACATTGATCAGAAGAAATGCCATTTGCA  250

seq1  TGAGTAGCCCTGTTCACAAGTACATAGTACCTGACACAGACACATCTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGCCCTGTTCACAAGTACATAGTACCTGACACAGACACATCTTAA  300

seq1  ATATAAACAAGAAGGGCAAAATCTTATAGTAGATTAAGAGCATGATGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAACAAGAAGGGCAAAATCTTATAGTAGATTAAGAGCATGATGGGT  350

seq1  TATGTGTTTGAATACTAGTGTTGCATATATATATATATATATATATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTTGAATACTAGTGTTGCATATATATATATATATATATATATAT  400

seq1  ATATATATATATATATATATATAATGCAACTCACAGTTGCATTATAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATAATGCAACTCACAGTTGCATTATAAACT  450

seq1  GATATGTAGGATTTTGTGCATGTGTGTAGTCTTAGGCAGAATTATGATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTAGGATTTTGTGCATGTGTGTAGTCTTAGGCAGAATTATGATCA  500

seq1  CAGGTAAAATTTCTCTAAACTCTGAAACTTATGAATAAATTACCTAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAAATTTCTCTAAACTCTGAAACTTATGAATAAATTACCTAATGT  550

seq1  GATGAAAATAACTTAGCAGGTGTGATTTAAGTCAAAGAATTTAACATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAATAACTTAGCAGGTGTGATTTAAGTCAAAGAATTTAACATGTT  600

seq1  GAAAATATCCCAGATTTTCTACGTGGATTTTAACATAATCAAGGAGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATCCCAGATTTTCTACGTGGATTTTAACATAATCAAGGAGTCTC  650

seq1  TGATGGTAGAAGAATGAAGTAAAAGAGAAATGACTACAAAATAATAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTAGAAGAATGAAGTAAAAGAGAAATGACTACAAAATAATAGTCA  700

seq1  GAGAAATGCATTGCTACAAGTTTGGAGATAGAGAAAAGAGGTCATGAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGCATTGCTACAAGTTTGGAGATAGAGAAAAGAGGTCATGAACC  750

seq1  AAGAAAAAAAATCATC-TTCTAGAATCTAAGAGGTTAAAGGGGGCAAATA  799
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAATCATCTTTCTAGAATCTAAGAGGTTAAAGGGGGCAAATA  800

seq1  TAAATTGATTC-TCTCCTAAATCATTTACACAGGAAGACAAT-CCTGCCA  847
      ||||||||||| ||||||||||||||||||||||||||| || |||||| 
seq2  TAAATTGATTCTTCTCCTAAATCATTTACACAGGAAGACCATCCCTGCCT  850

seq1  ACGTCTTGCTCTTGACTCAAAGACACATATTCCACATAAACAGATATTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTTGCTCTTGACTCAAAGACACATATTCCACATAAACAGATATTCA  900

seq1  AATGCGGGATAATAGTCACATTTGTCTCTAGTTTGTATGCTTATAGATTG  947
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATGCGGGATAATAGTCACATTTGTCTCTAGTTTGAATGCTTATAGATTG  950

seq1  GCTTTAGCTGTTTGTTGTCTTTCAGTTATTAAATGTTTCAGTGAAACAGA  997
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCTTTAGCTGTTTGTTGTCTTTCAGTTATTAAATGTTTCAATGAAACAGA  1000

seq1  ATAGTATAGGTATAAGTAAATTGTGTG-TGTGTGTGTGTGT  1037
      |||||||  ||||||||||||| |||| |||||||||||||
seq2  ATAGTATTAGTATAAGTAAATT-TGTGCTGTGTGTGTGTGT  1040

seq1: chrX_130227637_130228699
seq2: B6Ng01-150H16.g_64_1120 (reverse)

seq1  ACTATGGGAGGTAAAAAGTCTTTGCAGATGTGGAAGCACAGTTGCAGAGC  50
      |||||||  ||||||||||| |||||||||| ||||||||||||||||||
seq2  ACTATGGAGGGTAAAAAGTC-TTGCAGATGT-GAAGCACAGTTGCAGAGC  48

seq1  AGCTCAATGATTTGCCAAGATGACCTCATTACACAAAACTCAACCACTTT  100
      ||||| ||||||  | |||||||||||||||||| |||||||||||  ||
seq2  AGCTC-ATGATTGCCAAAGATGACCTCATTACAC-AAACTCAACCAACTT  96

seq1  CCTTGTGAAATCAACAAGTGCTGGCTGTGTGCCCAGCATTGTGTTAGGGA  150
      || ||||||||||   |||||||||||||||||||||| |||||||||||
seq2  CC-TGTGAAATCA--CAGTGCTGGCTGTGTGCCCAGCAATGTGTTAGGGA  143

seq1  GTACGGAGTTTTCTAAAGATGGACCTTGTCCCTGTGAAGATTAAACTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGGAGTTTTCTAAAGATGGACCTTGTCCCTGTGAAGATTAAACTTCA  193

seq1  GTTCACT-AATTGATTAACAGCATGTAGTTTCTATACACTATAAATATTC  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTAAATTGATTAACAGCATGTAGTTTCTATACACTATAAATATTC  243

seq1  CTTGAGAAAGAACTAAAGTGGGGTTTATTATGTTGACAGTTTGCTGAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAAGAACTAAAGTGGGGTTTATTATGTTGACAGTTTGCTGAAAT  293

seq1  TCGAATCCCTTCTACCCCAAATGATCCCATTTGGAGTGACTTCCCCTCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATCCCTTCTACCCCAAATGATCCCATTTGGAGTGACTTCCCCTCCT  343

seq1  CCACCCTCACTGACCCAGGCAGTTGAGGTAAAAGCAACAAGAGGAACAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTCACTGACCCAGGCAGTTGAGGTAAAAGCAACAAGAGGAACAGC  393

seq1  CAGGGATGTGGGCCTGTGGAGCAGGAATGAGGTGTGGTTTCCACTATGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATGTGGGCCTGTGGAGCAGGAATGAGGTGTGGTTTCCACTATGAT  443

seq1  ACCTGTTTCTGACTCTTTTGGAACACCAGGAAAACTAAAGATGAGAGGCG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTTCTGACTCTTTTGGAACACCAGGAAAACTAAAGATGAGAGGCG  493

seq1  GGGGCAAGGAAAGATGTTGAGGTCAGCTTTACTTTTTCCTTTCTCTTCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAGGAAAGATGTTGAGGTCAGCTTTACTTTTTCCTTTCTCTTCCT  543

seq1  GCCAAGCCCCACCCACCCTTGCCTTGTTACAGAGGGAAACAGTGACAGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCCCCACCCACCCTTGCCTTGTTACAGAGGGAAACAGTGACAGTG  593

seq1  GGAGTTGCAGGACATCGGACATCAACAAAATACAGAAAATATTCTCAAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGCAGGACATCGGACATCAACAAAATACAGAAAATATTCTCAAGT  643

seq1  GCTAAAATTGCTCACTGTGGTCCCAATGTTTGCCTTTTCCAAGAAATACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAATTGCTCACTGTGGTCCCAATGTTTGCCTTTTCCAAGAAATACA  693

seq1  GAAAAGGTCATGGACGGTGGAGACGAAAAAGGCTATTAATCACTCCAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGTCATGGACGGTGGAGACGAAAAAGGCTATTAATCACTCCAAGT  743

seq1  CTTCCAATTTTGACAAGGCCAACATCCCTGAAGAAGTTAATCCAACCCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAATTTTGACAAGGCCAACATCCCTGAAGAAGTTAATCCAACCCTG  793

seq1  ACCCCAAACCTTATGCCATCTCTCTTTAGGAATTCTGTTTCCCACATGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAACCTTATGCCATCTCTCTTTAGGAATTCTGTTTCCCACATGAC  843

seq1  CAAACCCCTGCTGCTGCCAGACTCATAACTGTCCCTAAATAAACACACAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCCTGCTGCTGCCAGACTCATAACTGTCCCTAAATAAACACACAT  893

seq1  CATGAGGACCATTTAATTAGCAAAGGCTAAATCAGCAGATACATTTCAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGACCATTTAATTAGCAAAGGCTAAATCAGCAGATACATTTCAAT  943

seq1  AAATGACACTGTTCTCTAACACCTTCTGCACTGCCCTGCAGTGATCACCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACACTGTTCTCTAACACCTTCTGCACTGCCCTGCAGTGATCACCT  993

seq1  GTGAAGTTTTGACAGCGCCATTTGGGCTCTCAGCATTACAGCCTCTGTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTTTTGACAGCGCCATTTGGGCTCTCAGCATTACAGCCTCTGTCT  1043

seq1  TTTCATGTGAATTC  1063
      ||||||||||||||
seq2  TTTCATGTGAATTC  1057