BAC Information

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BAC

Clone NameB6Ng01-150L01
ChromosomeX (Build37)
Map Location 25,220,660 - 25,502,548
singlet/doubletdoublet
Overlap geneLOC664810, EG382275
Upstream geneEG546282, LOC100040417, LOC100040428, LOC100040433, Xmr, LOC100038968, LOC100038977, LOC100038997
Downstream geneLOC100039030, LOC100039065, LOC100039078, LOC100039003, Slx, LOC100039120, LOC619914, LOC100039039, LOC619991, LOC664844
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150L01.bB6Ng01-150L01.g
ACCDH946707DH946708
length1,1261,182
definitionDH946707|Mus musculus domesticus DNA, BAC clone: B6Ng01-150L01, 5' end.DH946708|Mus musculus domesticus DNA, BAC clone: B6Ng01-150L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,220,660 - 25,221,799)(25,501,376 - 25,502,548)
sequence
gaattcactgtgagtcctctagaaaaacaaatagtgctttcaacggatga
gccatctctccagctcctttagttttatataaaagcgatgttaaccttcg
ctttcttttcggttcatatccatgtattttctctatcagttgtattgatg
atgattggcaggaagcaaactcaagggtgtgtgcagagtagtgaaagaaa
tccttaacaaaagagacgttgctttttccccaatatatccctgcctcatc
tccagcacttacctccgaaaatcttcccacaggattctccaggatttaga
ggaccatggtctacatgccttaaagggaattgcaaagttgttttcgctaa
agggtcaattccatcacatatctatccactggaaggccacgatgtgcatt
atccttgtgatttgctaaaactatttgctactatctcatattgttcaacc
catattcgggaccacatcatatacttgttcctctcaagggtgggcttcag
aaatctctacaaataacaaaggccccaggtgctcaagtccactctataat
accacagtatttgcctgtaacctgcacaatcctcccacatactctaaacc
acctcttggagatttataatacataataaaaatgtacattctatataaat
ggttgtatgatattatttagggaatgaaagaaaagagtcaagaaatgttc
aatacagatgacttattttcttacagatatttcctgtgtgtaattggtta
aatatgtgtgaaactcacatactgagggccagtgtgtctcaaaatcatgt
ttcccaatgtatatagcattgaaattggggtgaaataggaaaacccatac
ccatgaaccctgatagtgtagctcgcagcgaatgtgacaagctgacattg
gttggggagcagaccacaacttccttgcaagtgtgtttgggatatatata
tcaagacaaagatgtcagactcagagagcaactaacccttaggttaaatc
aatgacaaagctaatcgatgtctacactgaggtaacatgaatgggcacgt
agcactgaataaacgcagtagtcatcgagaaatgcatatcgagcatcctg
gaactcctctcatacattgggaatgg
gaattcaaagtctgactcttcaaagtcaagactatctatgaatctcagca
tgtttaccagatgctttatccataagtaatgtcaatacttttaacttggc
atttgggaagttgggatctctgatgtcgttacctgttccaaagaggcagt
aacaatccctcaagacctgattgccagtggcagcttagaactggtatata
gcacctcctttgttgtcaggaagtattaaggccatcaaaatatttaagag
gacatgaatgactatgtacataatcctattctctgatgacgagaggatct
ttgacataaaaattgttgcaactgaaaacatacttctcataaataacagc
aaaaaaaattggatagctgatatcagtacagattctataggcagttggag
acgctcatatttatgttgccccataagttagcatacattaatgtgatcac
agctgcttgaggcctgaaatgtcatgaatataaaaatggtatcttttgtc
actatgtgtcctcagtgtaacagaatatgaaactgaacatgacatggaga
aaacaataacacctaaattttcaccttatgttcagatggtctcagagatc
ctggacattaacagtctcatcagaagcaccatggactgtgggtttaaaca
aggccactgaaggcagcataatggatatcatcatattttctgtaggcact
ttgaatgagtgacattaatatagttctcagtggtagcagggatcactaat
gacaaggtggccaatgacagcatgtaacgaaggccataccatggaaatct
attgccatttatatgtcaatggcattagcatagattaaaagggaagaaaa
attatgattcatacacctcttatcaggtggcaactatttatcttgacagc
gcaatttccaggggcagtaacaaccatgtatattacatggttgatagcag
caggaagatcaacagaatttcttatggaagatagaattctcagacatcaa
tcttgatctactggtgtcaccctcagaacacttactcacatgaccgccta
ccattcaacatgaaccttgtaagtcagccaggttcttcaaacaataggag
aagatttatgccatccactggtaatttccatcagcaatagaaaagtgaat
catcacataatggctgtccagcatgcagcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_25220660_25221799
seq2: B6Ng01-150L01.b_43_1168

seq1  GAATTCACTGTGAGTCCTCTAGAAAAAGAAATAGTGCTTTCAACAGATGA  50
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  GAATTCACTGTGAGTCCTCTAGAAAAACAAATAGTGCTTTCAACGGATGA  50

seq1  GCCATCTCTCCAGTTCCTTTAGTTTTATTTAAAAGTGATGTTAACCTTCA  100
      ||||||||||||| |||||||||||||| |||||| ||||||||||||| 
seq2  GCCATCTCTCCAGCTCCTTTAGTTTTATATAAAAGCGATGTTAACCTTCG  100

seq1  CTTTCTTTTCGGTTCAGCTCCATGTATTTTCTCTATCAGTTGTATTGATG  150
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTCGGTTCATATCCATGTATTTTCTCTATCAGTTGTATTGATG  150

seq1  ATGATTGGCAGGAAGCAAACTCAAGGGTATGTGCAGAGTAGTGAAAGAAA  200
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGATTGGCAGGAAGCAAACTCAAGGGTGTGTGCAGAGTAGTGAAAGAAA  200

seq1  TCCTTAACAAAAGAGACGTTGCTTCCTCCCCAATATATCCCTGCCTCATC  250
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  TCCTTAACAAAAGAGACGTTGCTTTTTCCCCAATATATCCCTGCCTCATC  250

seq1  TCCAGCACTTACCTCTGAAGATCTTCCCACAGGATTCTCCAGGATTTAGA  300
      ||||||||||||||| ||| ||||||||||||||||||||||||||||||
seq2  TCCAGCACTTACCTCCGAAAATCTTCCCACAGGATTCTCCAGGATTTAGA  300

seq1  GGACCATGGTCTACATGCCTTAAAGGGAATTGCAAAGTTGTTTTCGCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATGGTCTACATGCCTTAAAGGGAATTGCAAAGTTGTTTTCGCTAA  350

seq1  AGGCTCAATTCCATCACATATCTATCCACTGGAAGGCCACGATGTGCATT  400
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCAATTCCATCACATATCTATCCACTGGAAGGCCACGATGTGCATT  400

seq1  ATCCTTGTGATTTGCTAAAACTATTTGCTACTATCTCATATTGTTCAAGC  450
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATCCTTGTGATTTGCTAAAACTATTTGCTACTATCTCATATTGTTCAACC  450

seq1  CATATTCGGGACCACATCATATACTTGTTCCTCTCAAGGGTGGGCTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCGGGACCACATCATATACTTGTTCCTCTCAAGGGTGGGCTTCAG  500

seq1  AAATCTCTACAAATAACAAAGGCCCCAGGTGCTCAAGTCCCCTCTATAAT  550
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAATCTCTACAAATAACAAAGGCCCCAGGTGCTCAAGTCCACTCTATAAT  550

seq1  ACCACAGTATTTGCCTGTAACCTGCACAATCCTCCCACATACTCTAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGTATTTGCCTGTAACCTGCACAATCCTCCCACATACTCTAAACC  600

seq1  ACCTCTTGGAGATTTATAATACATAAT-AAAATGTACATTCTATATAAAT  649
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACCTCTTGGAGATTTATAATACATAATAAAAATGTACATTCTATATAAAT  650

seq1  GGTTGTATCATATTATTTAGGGAATGAAAGAAAAAAGTCAAGAAATGTTC  699
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  GGTTGTATGATATTATTTAGGGAATGAAAGAAAAGAGTCAAGAAATGTTC  700

seq1  AATACAGATGACTTATTTTCTTACAGATATTTCCTGTGTGTAATTGGTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGATGACTTATTTTCTTACAGATATTTCCTGTGTGTAATTGGTTA  750

seq1  AATATGTGTGAAACTCACATACTGAGGGCCAGTGTGTCTCAAAAGCCATG  799
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  AATATGTGTGAAACTCACATACTGAGGGCCAGTGTGTCTCAAAA-TCATG  799

seq1  TTTCCCAATGTATATAGCATTGAAATTGGGGTAAAATAGGAAAACCCATA  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTCCCAATGTATATAGCATTGAAATTGGGGTGAAATAGGAAAACCCATA  849

seq1  CCCATGAACCCTGATAGTGTAGCT-GGAGGGAATGTGCCCAAGCTTGACA  898
      |||||||||||||||||||||||| | || |||||||  ||||| |||||
seq2  CCCATGAACCCTGATAGTGTAGCTCGCAGCGAATGTG-ACAAGC-TGACA  897

seq1  TT-GTTGGGGAGCAAACAAACAACTTACTTGCAAGTGTTATTCGGAAAAT  947
      || ||||||||||| ||  ||||||| |||||||||| | || || | ||
seq2  TTGGTTGGGGAGCAGAC-CACAACTTCCTTGCAAGTG-TGTTTGGGATAT  945

seq1  ATATATAAAGAACAAAAGATGTTAGACTCCAGAGAACCAAATAACCC-TA  996
      |||||| ||||   |||||||| ||||| ||||| | ||| |||||| ||
seq2  ATATATCAAGA--CAAAGATGTCAGACT-CAGAG-AGCAACTAACCCTTA  991

seq1  GTTAAAATTAATGAACAAAGCTAAACAGATTTCTCAACTGAGGAAACATG  1046
      | | |||| |||| |||||||||| | ||| |||  ||||||| ||||||
seq2  GGTTAAATCAATG-ACAAAGCTAATC-GATGTCTACACTGAGGTAACATG  1039

seq1  AATGGCCAAGTAGCACCTAAATAAACATCTGTAGTCATTAGAGAAATGCA  1096
      ||||| || |||||| || |||||||  | ||||||| | ||||||||||
seq2  AATGGGCACGTAGCA-CTGAATAAAC-GCAGTAGTCA-TCGAGAAATGCA  1086

seq1  TATCAAAACAACCCTGAGACTCCACCTCATACCAGTGGGAATGG  1140
      ||||   |  | ||||  |||||  |||||| || |||||||||
seq2  TATC--GAGCATCCTGGAACTCC-TCTCATA-CATTGGGAATGG  1126

seq1: chrX_25501376_25502548
seq2: B6Ng01-150L01.g_66_1247 (reverse)

seq1  AGTGCTGCATGCTGTGACAAGCAATA-ATGATGGAATCCACTTTTTTCTA  49
      |||||||||||||| ||||  || ||  |||||  || |||  |||||||
seq2  AGTGCTGCATGCTG-GACAGCCATTATGTGATG--ATTCAC--TTTTCTA  45

seq1  TTGCTGATG--AAATACCCGTTGATGGCCATAATC-TCTCCTATTGTTTG  96
      |||||||||  || |||| || ||||||   |||| ||||||||||||||
seq2  TTGCTGATGGAAATTACCAGTGGATGGCATAAATCTTCTCCTATTGTTTG  95

seq1  -AGAACCT-GCTGACTTACAATGTTCATGTTG-ATGGTA-GAGGTCATGT  142
       ||||||| |||||||||||| |||||||||| |||||| | ||||||| 
seq2  AAGAACCTGGCTGACTTACAAGGTTCATGTTGAATGGTAGGCGGTCATG-  144

seq1  TGAGGTAAATGTTCTGA-GGTGACA-CAGTAGATC-AGATTGATGTCTGA  189
      ||| |||| |||||||| ||||||| ||||||||| ||||||||||||||
seq2  TGA-GTAAGTGTTCTGAGGGTGACACCAGTAGATCAAGATTGATGTCTGA  193

seq1  G-ATTCTATCTTCCATAAGAAATTCTCTTGATCTTCCTGCCTGCTATCAA  238
      | |||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  GAATTCTATCTTCCATAAGAAATTCTGTTGATCTTCCTG-CTGCTATCAA  242

seq1  CCATGTAATATACATGGTTGTTACTGCCCATGG-AATTGCGCTTTCAAGA  287
      ||||||||||||||||||||||||||||| ||| ||||||||| ||||||
seq2  CCATGTAATATACATGGTTGTTACTGCCCCTGGAAATTGCGCTGTCAAGA  292

seq1  TAAATAG-TGCCACCTGATAAGAGGTGTATG-ATCATAATTTTTCTTCCC  335
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  TAAATAGTTGCCACCTGATAAGAGGTGTATGAATCATAATTTTTCTTCCC  342

seq1  TTTTAATCTATGCTAATGCCATTGACATATAAATGGCAATAGA-TTCCAT  384
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTAATCTATGCTAATGCCATTGACATATAAATGGCAATAGATTTCCAT  392

seq1  GGTATGGCCTTCGTTACATGCTGTCATTGGCCACCTTGTCATTAGTGATC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGCCTTCGTTACATGCTGTCATTGGCCACCTTGTCATTAGTGATC  442

seq1  CATGATACCACTGAGAACTATATTAATGTCACTCATTCAAAGTGCCTACA  484
      | || |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTACCACTGAGAACTATATTAATGTCACTCATTCAAAGTGCCTACA  492

seq1  GAAAATATGATGATATCCATTATGCTGCCTTCAGTGGCCTTGTTTAAACC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATGATGATATCCATTATGCTGCCTTCAGTGGCCTTGTTTAAACC  542

seq1  CACAGTCCATGGTCCTTCTGATGAGACTGTTAATGTCCAGGATCTCTGAG  584
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CACAGTCCATGGTGCTTCTGATGAGACTGTTAATGTCCAGGATCTCTGAG  592

seq1  ACCATCTGAACATAAGGTGAAAATTTAGGTCTTACTG-TTTCTCCATGTC  633
      |||||||||||||||||||||||||||||| ||| || ||||||||||||
seq2  ACCATCTGAACATAAGGTGAAAATTTAGGTGTTATTGTTTTCTCCATGTC  642

seq1  ATGTTCAGTTTCATATTCTGTTACACTGAGGACACATAGTGACAAAAGGT  683
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGTTCAGTTTCATATTCTGTTACACTGAGGACACATAGTGACAAAAGAT  692

seq1  ACCATTTTTATATTCATGACATTTCAGGCCTCACGCAGCTGTGATCACAT  733
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACCATTTTTATATTCATGACATTTCAGGCCTCAAGCAGCTGTGATCACAT  742

seq1  TAATCTCTGCTAACTTATGGGGCAACATAAATATGAGCGTCTCCAACTGC  783
      |||| | |||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTATGCTAACTTATGGGGCAACATAAATATGAGCGTCTCCAACTGC  792

seq1  CTATAGAATCTCTACTGATACCAGCTATCCAAATTTTTCTGCTGTTATTT  833
      ||||||||||| |||||||| ||||||||||| ||||| |||||||||||
seq2  CTATAGAATCTGTACTGATATCAGCTATCCAATTTTTTTTGCTGTTATTT  842

seq1  ATGAGAAGTATGCTTTCACCTGCAACAATTTTTATGTCAAAGATCCTCCT  883
      |||||||||||| |||||  ||||||||||||||||||||||||||||  
seq2  ATGAGAAGTATGTTTTCAGTTGCAACAATTTTTATGTCAAAGATCCTCTC  892

seq1  GTCATCAGAGAAGAGGATTATGTACATAGTCATTCATGTCCTCTTAAATA  933
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTCATCAGAGAATAGGATTATGTACATAGTCATTCATGTCCTCTTAAATA  942

seq1  TTTTGATGGCCTTGATACTTCCTGACAACAAATGAGGTGCTATATACCAG  983
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  TTTTGATGGCCTTAATACTTCCTGACAACAAAGGAGGTGCTATATACCAG  992

seq1  TTCTAAGCTGCCACTGGCAACCAGGTCCTGAGGGATTGTTACTGCCTCTT  1033
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  TTCTAAGCTGCCACTGGCAATCAGGTCTTGAGGGATTGTTACTGCCTCTT  1042

seq1  TGGAACAGGTAATGACATCAGAGATCCCAACTTCCCAAATGCCAAGTTAA  1083
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGGAACAGGTAACGACATCAGAGATCCCAACTTCCCAAATGCCAAGTTAA  1092

seq1  AAGTATTGACATTACTTATCGATAAAGCATCTGGTAAACATGTTGAGATT  1133
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  AAGTATTGACATTACTTATGGATAAAGCATCTGGTAAACATGCTGAGATT  1142

seq1  CATAGATAGTCTTGACTTTGAAGAGTCTGACTTTGAATTC  1173
      ||||||||||||||||||||||||||| ||||||||||||
seq2  CATAGATAGTCTTGACTTTGAAGAGTCAGACTTTGAATTC  1182