BAC Information

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BAC

Clone NameB6Ng01-152O04
ChromosomeX (Build37)
Map Location 53,397,066 - 53,495,834
singlet/doubletdoublet
Overlap gene3830403N18Rik, LOC626439, Gm773, LOC100039254
Upstream geneEG666199, 4930527E24Rik, LOC626274, LOC625210, LOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263
Downstream geneLOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152O04.bB6Ng01-152O04.g
ACCDH948349DH948350
length1,0781,164
definitionDH948349|Mus musculus domesticus DNA, BAC clone: B6Ng01-152O04, 5' end.DH948350|Mus musculus domesticus DNA, BAC clone: B6Ng01-152O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,494,743 - 53,495,834)(53,397,066 - 53,398,118)
sequence
gaattctcacttgtgaaaatgaattttgcaacttagaaactaagatgaaa
catggattataactgaactagccttctgtgttttaatattttaagaacat
ggaggataaatatgataacttatgtagtgcttcattaattgaatttaaaa
aaagaaattgctgagtatcaaaagaaacaaatgatgttaactttaagttg
tattttacaccggaaatgacacaatttagcagaagcattaaagtgattta
tttactaaaatatacataacactaaaattcatcatgtttcttttctcctt
ctatgaaacagaagcggcaagagattgaaaatattcgaaattctcttcaa
tcccttctatttagatgagtctttgaagaaaacttgaacatgttttgtac
aatataattctaatgttagctaaaatgcatttcttttttatgttttttgg
atattttatttatttacatttcaataattatcccccttcctgatttcccc
tctgcaatcccccacctcattctccatccccctgtttctctgagtatgct
cacctacccacactctcctgcttcatcaccctggctttcacctacactgg
gacatcaagccttcaaaggaccaagggccccaccttccattgatgcccaa
caatgacattctctgctatatatgtagctggagccatggtaaaaaaaatt
aagtttaaatacaatctaaataggttcataactagcagctattttgctat
atcagattttaactctcttggttttagtgagggtttttttctctccagca
atgtggattcacttttatgactaaacatggtttatttgtttgattgtttg
tttgtttgttggcatcagaaaattccttatcagtcaacaaagacacaaag
tgcaattgtagaaggtgatattgacatttgctttgcttgtttattttgag
atagggaagtagaaacataaagaaaacccaaatgagacactgtggagata
gaaccctaggaagaatcatgaccatgatgcgagcatcaccacagaatata
gagatggaagaatctcagtgcagaagat
gaattcctggcgtgaccaatctccttagatcctgctgtgtcagagaactc
ctgggagttaagctttctctgggtgttgcaagatttggtggggtgccagc
accctaggttttctctgcacacaggtgcaaactgcaaggaacctgtgcct
ataactgggagggtgatttttttccgtggttcttgtgggggtcccagtta
cacagggtgatgggaaagatgttgtgccctcagctgtgatcttctgtcag
aactccagtgtttctgggtgtgtctgatctgctatgagtcaagcttcctc
tgtgatgctgtgatcttaagcattttaaaatacctgggagttgggctccc
tctgagtgttttaagagtgggtgcagagccagcaccccaggtttgctcca
ggtacaagttcagaacagaaggaatccatgccacggcccaggcaggggtt
cctgtgtccctgcatccttcgggactgttactcctgatgttggggccttt
cttgtgatcctgggcgttttagagcacctgggaattgagcttcctctggg
tgttgtgggactaggtgcagagtcagcacccaaggtctactcatgacaca
gactcttgcaaatatttttgatttaccatcgtggacttattttttcctgt
ggtacagaaagtgaaaatggtgcttttttgaacaggtgtgacattaatga
aacttcatttttatttttatttttgcatgttttgtgtctgtggtgcatat
atacacatgtggaaggcagaggaggatgtttgggtgttgctctattactt
ttctaccttattcccttaagacaggctctgtcactgaacatgcagctaga
caagcagcccagcaattcctagcaattctcactctgcccaccacagtgct
tctattgtagagcaaccatccatggttgcttttgtagatgggtacttgat
tcaaacttgtgaacctccttctttcacagtaaaccctatttactactgag
ccatctccgtaatgctttggaagggatttttagaggaaaaaaatagatgt
aacatttttccgttcatgttatcaaagcctaatggacattgataaaaatt
ctggtactgccacccatttttcattgacccaagcgtgaaatttatattag
actcattcttttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_53494743_53495834
seq2: B6Ng01-152O04.b_44_1121 (reverse)

seq1  ATCTTCTGCACTTGAGATTCTTCCATCTCCTATATTCTGTTGGTGATGCT  50
      ||||||||||| |||||||||||||||| |||||||||| ||||||||||
seq2  ATCTTCTGCAC-TGAGATTCTTCCATCT-CTATATTCTG-TGGTGATGCT  47

seq1  CGCATCCATGGTTCATGATTTCTTTCCTAGGGTTTCTATCTCCACAGTTG  100
      ||||| ||||| ||||||||   ||||||||| |||||||||||||| ||
seq2  CGCAT-CATGG-TCATGATT--CTTCCTAGGG-TTCTATCTCCACAG-TG  91

seq1  TCTCATTTTGGGTTTTCTTTATTGTTTCTACTTCCCTATCTCAAAAATAA  150
      ||||| ||||||||||||||| |||||||||||||||||||| |||||||
seq2  TCTCA-TTTGGGTTTTCTTTA-TGTTTCTACTTCCCTATCTC-AAAATAA  138

seq1  AACAAAGCAAAGCAAATGTCAATATCACCTTCTACAATTGCACTTTGTGT  200
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  A--CAAGCAAAGCAAATGTCAATATCACCTTCTACAATTGCACTTTGTGT  186

seq1  CTTTGTTGACTGATAAGGAATTTTCTGATGCCAACAAACAAACAAACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTGACTGATAAGGAATTTTCTGATGCCAACAAACAAACAAACAAT  236

seq1  CAAACAAATAAACCATGTTTAGTCATAAAAGTGAATCCACATTGCTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAATAAACCATGTTTAGTCATAAAAGTGAATCCACATTGCTGGAG  286

seq1  AGAAAAAAACCCTCACTAAAACCAAGAGAGTTAAAATCTGATATAGCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAACCCTCACTAAAACCAAGAGAGTTAAAATCTGATATAGCAAA  336

seq1  ATAGCTGCTAGTTATGAACCTATTTAGATTGTATTTAAACTTAATTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGCTAGTTATGAACCTATTTAGATTGTATTTAAACTTAATTTTTT  386

seq1  TTACCATGGCTCCAGCTACATATATAGCAGAGAATGTCATTGTTGGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATGGCTCCAGCTACATATATAGCAGAGAATGTCATTGTTGGGCAT  436

seq1  CAATGGAAGGTGGGGCCCTTGGTCCTTTGAAGGCTTGATGTCCCAGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAAGGTGGGGCCCTTGGTCCTTTGAAGGCTTGATGTCCCAGTGTA  486

seq1  GGTGAAAGCCAGGGTGATGAAGCAGGAGAGTGTGGGTAGGTGAGCATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAAGCCAGGGTGATGAAGCAGGAGAGTGTGGGTAGGTGAGCATACT  536

seq1  CAGAGAAACAGGGGGATGGAGAATGAGGTGGGGGATTGCAGAGGGGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACAGGGGGATGGAGAATGAGGTGGGGGATTGCAGAGGGGAAAT  586

seq1  CAGGAAGGGGGATAATTATTGAAATGTAAATAAATAAAATATCCAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGGGGATAATTATTGAAATGTAAATAAATAAAATATCCAAAAAA  636

seq1  CATAAAAAAGAAATGCATTTTAGCTAACATTAGAATTATATTGTACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAAAGAAATGCATTTTAGCTAACATTAGAATTATATTGTACAAAA  686

seq1  CATGTTCAAGTTTTCTTCAAAGACTCATCTAAATAGAAGGGATTGAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCAAGTTTTCTTCAAAGACTCATCTAAATAGAAGGGATTGAAGAG  736

seq1  AATTTCGAATATTTTCAATCTCTTGCCGCTTCTGTTTCATAGAAGGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCGAATATTTTCAATCTCTTGCCGCTTCTGTTTCATAGAAGGAGAA  786

seq1  AAGAAACATGATGAATTTTAGTGTTATGTATATTTTAGTAAATAAATCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACATGATGAATTTTAGTGTTATGTATATTTTAGTAAATAAATCAC  836

seq1  TTTAATGCTTCTGCTAAATTGTGTCATTTCCGGTGTAAAATACAACTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCTTCTGCTAAATTGTGTCATTTCCGGTGTAAAATACAACTTAA  886

seq1  AGTTAACATCATTTGTTTCTTTTGATACTCAGCAATTTCTTTTTTTAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACATCATTTGTTTCTTTTGATACTCAGCAATTTCTTTTTTTAAAT  936

seq1  TCAATTAATGAAGCACTACATAAGTTATCATATTTATCCTCCATGTTCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAATGAAGCACTACATAAGTTATCATATTTATCCTCCATGTTCTT  986

seq1  AAAATATTAAAACACAGAAGGCTAGTTCAGTTATAATCCATGTTTCATCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTAAAACACAGAAGGCTAGTTCAGTTATAATCCATGTTTCATCT  1036

seq1  TAGTTTCTAAGTTGCAAAATTCATTTTCACAAGTGAGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTAAGTTGCAAAATTCATTTTCACAAGTGAGAATTC  1078

seq1: chrX_53397066_53398118
seq2: B6Ng01-152O04.g_176_1231

seq1  TTTTCTCTGCACACAGGTGCAAACTGCAAGGAACCTGTGCCTATAACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTGCACACAGGTGCAAACTGCAAGGAACCTGTGCCTATAACTGG  50

seq1  GAGGGTGATTTTTTTCCGTGGTTCTTGTGGGGGTCCCAGTTACACAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGATTTTTTTCCGTGGTTCTTGTGGGGGTCCCAGTTACACAGGGT  100

seq1  GATGGGAAAGATGTTGTGCCCTCAGCTGTGATCTTCTGTCAGAACTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAAAGATGTTGTGCCCTCAGCTGTGATCTTCTGTCAGAACTCCAG  150

seq1  TGTTTCTGGGTGTGTCTGATCTGCTATGAGTCAAGCTTCCTCTGTGATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGGGTGTGTCTGATCTGCTATGAGTCAAGCTTCCTCTGTGATGC  200

seq1  TGTGATCTTAAGCATTTTAAAATACCTGGGAGTTGGGCTCCCTCTGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCTTAAGCATTTTAAAATACCTGGGAGTTGGGCTCCCTCTGAGTG  250

seq1  TTTTAAGAGTGGGTGCAGAGCCAGCACCCCAGGTTTGCTCCAGGTACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGAGTGGGTGCAGAGCCAGCACCCCAGGTTTGCTCCAGGTACAAG  300

seq1  TTCAGAACAGAAGGAATCCATGCCACGGCCCAGGCAGGGGTTCCTGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAACAGAAGGAATCCATGCCACGGCCCAGGCAGGGGTTCCTGTGTC  350

seq1  CCTGCATCCTTCGGGACTGTTACTCCTGATGTTGGGGCCTTTCTTGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATCCTTCGGGACTGTTACTCCTGATGTTGGGGCCTTTCTTGTGAT  400

seq1  CCTGGGCGTTTTAGAGCACCTGGGAATTGAGCTTCCTCTGGGTGTTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCGTTTTAGAGCACCTGGGAATTGAGCTTCCTCTGGGTGTTGTGG  450

seq1  GACTAGGTGCAGAGTCAGCACCCAAGGTCTACTCATGACACAGACTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGTGCAGAGTCAGCACCCAAGGTCTACTCATGACACAGACTCTTG  500

seq1  CAAATATTTTTGATTTACCATCGTGGACTTATTTTTTCCTGTGGTACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTTTTGATTTACCATCGTGGACTTATTTTTTCCTGTGGTACAGA  550

seq1  AAGTGAAAATGGTGC-TTTTTGAACAGGTGTGACATTAATGAAACTTCAT  599
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGTGAAAATGGTGCTTTTTTGAACAGGTGTGACATTAATGAAACTTCAT  600

seq1  TTTTATTTTTATTTTTGCATG-TTTGTGTCTGTGGTGCATATATACACAT  648
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTTATTTTTATTTTTGCATGTTTTGTGTCTGTGGTGCATATATACACAT  650

seq1  GTGGAAGGCAGAGGAGGATG-TTGGGTGTTGCTCTATTAC-TTTCTACCT  696
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  GTGGAAGGCAGAGGAGGATGTTTGGGTGTTGCTCTATTACTTTTCTACCT  700

seq1  TATTCCCTTAAGACAGGCTCTGTCACTGAACATGCAGCTAGACAAGCAG-  745
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATTCCCTTAAGACAGGCTCTGTCACTGAACATGCAGCTAGACAAGCAGC  750

seq1  CCAGCAAGTCCTAGCAATTCTCACTCTGCCTACCACAGTGCTTCTATTGT  795
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  CCAGCAATTCCTAGCAATTCTCACTCTGCCCACCACAGTGCTTCTATTGT  800

seq1  AGAAGCAACCATCCATGGTTGCTTTTGTAGATGGGTACTTGATTCAAACT  845
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-AGCAACCATCCATGGTTGCTTTTGTAGATGGGTACTTGATTCAAACT  849

seq1  TGTGAACCTCCTCCTTTCACAGTAAACCCTATTTACTACTGAGCCATCTT  895
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  TGTGAACCTCCTTCTTTCACAGTAAACCCTATTTACTACTGAGCCATCTC  899

seq1  CGTAAATGCTTT-GAAGGGATTTTTAGAGG-AAAAAATAGATGTAAACAT  943
      ||| |||||||| ||||||||||||||||| ||||||||||||| |||||
seq2  CGT-AATGCTTTGGAAGGGATTTTTAGAGGAAAAAAATAGATGT-AACAT  947

seq1  TTTTACAGTTCCATGTATTCAAAG-CTAAGTGATATGTATAAAAAATTCT  992
      |||| | ||| |||||  |||||| ||||  || ||  || |||||||||
seq2  TTTT-CCGTT-CATGTTATCAAAGCCTAATGGACATTGAT-AAAAATTCT  994

seq1  -GTACATGCAACAATTTTTCATTGACCC-AGTGTGAATTTTATATTA-AG  1039
       ||||   || | ||||||||||||||| || ||||| ||||||||| | 
seq2  GGTACTGCCACCCATTTTTCATTGACCCAAGCGTGAAATTTATATTAGAC  1044

seq1  TCAGTTTCTTTTCT  1053
      |||  |||||||||
seq2  TCA--TTCTTTTCT  1056