BAC Information

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BAC

Clone NameB6Ng01-153H23
ChromosomeX (Build37)
Map Location 54,598,271 - 54,741,545
singlet/doubletdoublet
Overlap geneRbmx, Snord61, Gm364
Upstream geneZfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b, Gm648, Tmem32, Slc9a6, LOC100039342, Fhl1, Mtap7d3, Gpr112, Brs3, Htatsf1, Vgll1, Cd40lg, Arhgef6
Downstream geneGpr101, Aldoa-ps, EG666441, LOC666447, Zic3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153H23.bB6Ng01-153H23.g
ACCDH948794DH948795
length1,020783
definitionDH948794|Mus musculus domesticus DNA, BAC clone: B6Ng01-153H23, 5' end.DH948795|Mus musculus domesticus DNA, BAC clone: B6Ng01-153H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,740,524 - 54,741,545)(54,598,271 - 54,599,045)
sequence
gaattcaaggccatcttagactacagagtaagtccctgtctcaaaacaag
atcaactgtcaagctctctcgctatacaatcaggatgagcagtgaggcca
gaagtggtcacaggtgagagaatcccttctgatggaattctttgagtttc
taaccagagccaaaattaaacacaaatgatcagcttatgttctccatttc
aaagaagctcaaagctatcttctgatatacacttcttgtaatatgcttca
aagtttagacattgtaagcaaccaggctgtggagatggctcagtcagtaa
agtgtatgccacacaaaaatgagggactgagttcagatccccagcacccc
cttaaactctgggtgctgtgggggtacacctctaatcccagtactgggaa
gacagaaacatgtagactctgaaagttcatcagccaaataggatggccaa
ttggttagcttcaggttcattaacggtttcaaaaaatactgtgaagactg
aggaagatccctggcatgaacatctaacctatgcacatacacacacccca
tacacacagagacacaaatataagatatcattagcattatacataataaa
atggaatataaatccagagtacctattagttttcaaatctaattgtgtta
ttataaacatgaaaaaaatcccatttctcaggattcatgttaaaaaaaaa
acccacaatcttataaaagaaaaacacttaataacagaaaattgatctta
atactatggtttaaaacatataaaacaaaattttttttaaaaagccaaat
gttcctcaaagaagttattagctatactgtagcctaggtaaatgatgaaa
taatatagtcaccaaaatgataaatataaagacttattagcagtataggg
aaatctttggttgatgattttgggggtgtttgttggagacaaattcagaa
ctggccctgaaatactaggcttcaaacttgaggtgatctttctgcctagt
ggtttcagtgctgtattaca
gaattcaatcccagcctagactaaataagaggctggagaccagctagggc
tatgaaaggaaacaagacctaaatagaaaatagactgaatacaactaggt
gtggcagctgacacttgtaaaacccctccagcccttacccctggaaagaa
gatggatcaccacaagtttgaggctaacctggtttacatagtgcgttcaa
gactagcctagactaaaaaataaaaaatgagactgtctcaaaggggggat
ttattaccatagaattacaatttacacaagaatcttatacctcatctaag
ttaagaatactggctccataaaatctcagtttaagaaaatgaaaagtcac
agccagaatgaaaatatcacaagtcacatatctgatgctgtcttacaacc
taaaaagaagtctatacattcttataactcctttaattggggggggggtg
tgattcacttgttcataggggctcacttttattatttcagcactgaggag
accaagtccaatctgagctacatagtaaagtccaggctagatttaggtat
aggaatgagacttgtctcaacctctccccaactacaatccaacagaaaaa
tggacaaaatacctgaatggacatttcatgaaaatgggatatttgggata
taaaaaaaaaacatgaaaagataccatcactttaatttaattcactggag
aaatgacaaatgttttatctgatatatgatataacaagtagaataagggc
taaagaaaaagaaggtatgcctcaaaatgctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_54740524_54741545
seq2: B6Ng01-153H23.b_45_1064 (reverse)

seq1  TGTAATACCAGCACTTGAAACACTGAGGCAGAAAGATCACCTCAAGTTTG  50
      ||||||| |||||||  || |||| |||||||||||||||||||||||||
seq2  TGTAATA-CAGCACTGAAACCACT-AGGCAGAAAGATCACCTCAAGTTTG  48

seq1  -AGGCTAGTAATTTCAGGGCCAGTTCTGAATTTGTCTCCAACAAACACCC  99
       || ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAGT-ATTTCAGGGCCAGTTCTGAATTTGTCTCCAACAAACACCC  97

seq1  CCAAAATCATCAACCAAAGATTTCCCTATACTGCTAATAAGTCTTTATAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATCATCAACCAAAGATTTCCCTATACTGCTAATAAGTCTTTATAT  147

seq1  TTATCATTTTGGTGACTATATTATTTCATCATTTACCTAGGCTACAGTAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATTTTGGTGACTATATTATTTCATCATTTACCTAGGCTACAGTAT  197

seq1  AGCTAATAACTTCTTTGAGGAACATTTGGCTTTTTAAAAAAAATTTTGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATAACTTCTTTGAGGAACATTTGGCTTTTTAAAAAAAATTTTGTT  247

seq1  TTATATGTTTTAAACCATAGTATTAAGATCAATTTTCTGTTATTAAGTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTTTTAAACCATAGTATTAAGATCAATTTTCTGTTATTAAGTGT  297

seq1  TTTTCTTTTATAAGATTGTGGGTTTTTTTTTTAACATGAATCCTGAGAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTATAAGATTGTGGGTTTTTTTTTTAACATGAATCCTGAGAAA  347

seq1  TGGGATTTTTTTCATGTTTATAATAACACAATTAGATTTGAAAACTAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTTTTTCATGTTTATAATAACACAATTAGATTTGAAAACTAATA  397

seq1  GGTACTCTGGATTTATATTCCATTTTATTATGTATAATGCTAATGATATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTCTGGATTTATATTCCATTTTATTATGTATAATGCTAATGATATC  447

seq1  TTATATTTGTGTCTCTGTGTGTATGGGGTGTGTGTATGTGCATAGGTTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTGTGTCTCTGTGTGTATGGGGTGTGTGTATGTGCATAGGTTAG  497

seq1  ATGTTCATGCCAGGGATCTTCCTCAGTCTTCACAGTATTTTTTGAAACCG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATGCCAGGGATCTTCCTCAGTCTTCACAGTATTTTTTGAAACCG  547

seq1  TTAATGAACCTGAAGCTAACCAATTGGCCATCCTATTTGGCTGATGAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAACCTGAAGCTAACCAATTGGCCATCCTATTTGGCTGATGAACT  597

seq1  TTCAGAGTCTACATGTTTCTGTCTTCCCAGTACTGGGATTAGAGGTGTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTCTACATGTTTCTGTCTTCCCAGTACTGGGATTAGAGGTGTAC  647

seq1  CCCCACAGCACCCAGAGTTTAAGGGGGTGCTGGGGATCTGAACTCAGTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAGCACCCAGAGTTTAAGGGGGTGCTGGGGATCTGAACTCAGTCC  697

seq1  CTCATTTTTGTGTGGCATACACTTTACTGACTGAGCCATCTCCACAGCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTTGTGTGGCATACACTTTACTGACTGAGCCATCTCCACAGCCT  747

seq1  GGTTGCTTACAATGTCTAAACTTTGAAGCATATTACAAGAAGTGTATATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTTACAATGTCTAAACTTTGAAGCATATTACAAGAAGTGTATATC  797

seq1  AGAAGATAGCTTTGAGCTTCTTTGAAATGGAGAACATAAGCTGATCATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATAGCTTTGAGCTTCTTTGAAATGGAGAACATAAGCTGATCATTT  847

seq1  GTGTTTAATTTTGGCTCTGGTTAGAAACTCAAAGAATTCCATCAGAAGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAATTTTGGCTCTGGTTAGAAACTCAAAGAATTCCATCAGAAGGG  897

seq1  ATTCTCTCACCTGTGACCACTTCTGGCCTCACTGCTCATCCTGATTGTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTCACCTGTGACCACTTCTGGCCTCACTGCTCATCCTGATTGTAT  947

seq1  AGCGAGAGAGCTTGACAGTTGATCTTGTTTTGAGACAGGGACTTACTCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGAGAGCTTGACAGTTGATCTTGTTTTGAGACAGGGACTTACTCTG  997

seq1  TAGTCTAAGATGGCCTTGAATTC  1022
      |||||||||||||||||||||||
seq2  TAGTCTAAGATGGCCTTGAATTC  1020

seq1: chrX_54598271_54599045
seq2: B6Ng01-153H23.g_70_852

seq1  GAATTCAATCCCAGCCTAGACTAAATAAGAGGCTGGAGACCAGCTAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCCAGCCTAGACTAAATAAGAGGCTGGAGACCAGCTAGGGC  50

seq1  TATGAAAGGAAACAAGACCTAAATAGAAAATAGACTGAATACAACTAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGGAAACAAGACCTAAATAGAAAATAGACTGAATACAACTAGGT  100

seq1  GTGGCAGCTGACACTTGTAAAACCCCTCCAGCCCTTACCCCTGGAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGCTGACACTTGTAAAACCCCTCCAGCCCTTACCCCTGGAAAGAA  150

seq1  GATGGATCACCACAAGTTTGAGGCTAACCTGGTTTACATAGTGCGTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATCACCACAAGTTTGAGGCTAACCTGGTTTACATAGTGCGTTCAA  200

seq1  GACTAGCCTAGACTAAAAAATAAAAAATGAGACTGTCTCAAAGGGGGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGCCTAGACTAAAAAATAAAAAATGAGACTGTCTCAAAGGGGGGAT  250

seq1  TTATTACCATAGAATTACAATTTACACAAGAATCTTATACCTCATCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACCATAGAATTACAATTTACACAAGAATCTTATACCTCATCTAAG  300

seq1  TTAAGAATACTGGCTCCATAAAATCTCAGTTTAAGAAAATGAAAAGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATACTGGCTCCATAAAATCTCAGTTTAAGAAAATGAAAAGTCAC  350

seq1  AGCCAGAATGAAAATATCACAAGTCACATATCTGATGCTGTCTTACAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAATGAAAATATCACAAGTCACATATCTGATGCTGTCTTACAACC  400

seq1  TAAAAAGAAGTCTATACATTCTTATAACTCCTTTAATTGGGGGGGGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAAGTCTATACATTCTTATAACTCCTTTAATTGGGGGGGGGGTG  450

seq1  TGATTCACTTGTTCATAGGGGCTCACTTTTATTATTTCAGCACTGAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCACTTGTTCATAGGGGCTCACTTTTATTATTTCAGCACTGAGGAG  500

seq1  ACCAAGTCCAATCTGAGCTACATAGTAAAGTCCAGGCTAGATTTAGGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTCCAATCTGAGCTACATAGTAAAGTCCAGGCTAGATTTAGGTAT  550

seq1  AGGAATGAGACTTGTCTCAACCTCTCCCCAACTACAATCCAACAG-AAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGAATGAGACTTGTCTCAACCTCTCCCCAACTACAATCCAACAGAAAAA  600

seq1  TGGACAAAATACCTGAATGGACATTTCATGAAA--TGGATATTT-GGATA  646
      |||||||||||||||||||||||||||||||||   |||||||| |||||
seq2  TGGACAAAATACCTGAATGGACATTTCATGAAAATGGGATATTTGGGATA  650

seq1  TAAAAAAAAAACATGAAAAGATA-CATCACTTTAATT--AATCACTGGAG  693
      ||||||||||||||||||||||| |||||||||||||  | |||||||||
seq2  TAAAAAAAAAACATGAAAAGATACCATCACTTTAATTTAATTCACTGGAG  700

seq1  AAATGACAAATG-TTTATCTGATACATGATAT-ACAAGTAGAATAAGGGC  741
      |||||||||||| ||||||||||| ||||||| |||||||||||||||||
seq2  AAATGACAAATGTTTTATCTGATATATGATATAACAAGTAGAATAAGGGC  750

seq1  TAAAGAAAAAGAAGGTGATGCCACAAAATGCTGG  775
      |||||||||||||||| ||||| |||||||||||
seq2  TAAAGAAAAAGAAGGT-ATGCCTCAAAATGCTGG  783