BAC Information

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BAC

Clone NameB6Ng01-154K10
Chromosome7 (Build37)X (Build37)
Map Location 32,901,791 - 32,902,436102,073,741 - 102,074,295
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneScn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe, LOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233, LOC100043337, LOC546949, LOC100043836, EG626305, EG668342, EG626330, LOC100043340, LOC100043343, EG626358, LOC668351, EG384593, LOC100043351, LOC100043352, LOC100043353, EG384594, LOC100043838, EG668361, LOC668362, EG624584, LOC100043355
Downstream geneLOC546951, EG626740, EG668371, EG668377, LOC100043842, LOC634929, EG668379, EG668381, LOC668386, LOC626373, EG384589, EG668393, EG330689, LOC100043362, LOC100043365, EG384591, LOC668398, EG384596, LOC100043370, LOC434161, EG270499, LOC100043845, LOC100043373, LOC668410, EG624439, LOC100043376, LOC100043379, LOC100043383, EG668411, LOC100043850, LOC100043386, LOC668416, EG668526, LOC100043388, LOC270234, EG668419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154K10.bB6Ng01-154K10.g
ACCDH949639DH949640
length1,141961
definitionDH949639|Mus musculus domesticus DNA, BAC clone: B6Ng01-154K10, 5' end.DH949640|Mus musculus domesticus DNA, BAC clone: B6Ng01-154K10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,901,791 - 32,902,436)(102,073,741 - 102,074,295)
sequence
gaattctcaaagcatggcctgtcccagaagttgtgtttcctctgcagtct
gcgtgctcatctgctcagactgctctctgaggaacgtgggacgcaagatg
tctctctcaccagttctgaaattcagagccctccatggtggacaactctc
ttctgtcatggaaagtgctcagatatcttgagcccaaaatagtgtctgtc
ccagaagctgtgttgcttctggtgtctccttactcaccctctgcagaact
gacctatgcagattggtctctgaggcacccaggacacatgatggttccct
aaccttcgctggcattcagagtcctccttggaagggcacctctcccctgg
cagggaacgtgcttggatttctagagcctgaaatggggtctctagcagaa
cctatgtcacttctgcctttctcagaagctatgtagtttttgtagttcac
atgctcacctccgcagactagtctctgaaggatccaggaaccaagatgac
tccctcacctgctctggcagtcagagccctcctgggtggacacctcttct
atagcagggaaggtagctggatgtttggtgcccaaaatggggtctctccc
acaagctgtgtttcttctgcctgtcccagaagctgtgtcccgtctgtagt
ccgctcgcacagcctccgaagaactgagctgcacagactggtctctgagg
gacctggaacccatgatggctcactcatttgctcctgcagtcagagtcct
tccgggaggacacctctcctctggcagggaaagtgcctggatgtctggag
ctggaagaggggtgtgtccaagaagctgtgtgactactgcctgtcccaga
atctgacttgctgctgtactcagcactctcacctcacagaatattctctg
aaggacccgggacccaagatggctccctcacctgctgtcttagtcagagc
cctcctgggcagtcaccctctcctctaatcctgagcttctatgattatga
taccaatgatcaagacagcctcaaaaaccctttcagccagctgagttaac
ctaaagtgtagtgtcacctcttactgtgagtaaattaatctatcaatctc
aaagctacctcccatatatggactcatgaacaaaactttgt
gaattcacaggggagcactggatcctctggaactggagttacagatggtt
gttaactactatgtgggtagtgggaagtgattctgtgtccttttaatatc
tgaaaccaccttatattttttgagacagggcctcttactggagcttggta
atggctaaatggactgtccagtaagctctctggtgctggagttaccaggg
gtcactttgtgccaagctgtcctcacaatttcagaggtttggaaaccatg
gattcaagagtgtataccaagcaactacttcacttactggcctgtccccc
aagctcaccctactgctttcttgagaacatagggctcacagtgaaggact
gaagggggatatactcccaggagaaacatctatagatcctctggaattcg
tctgtgagatgtaagaacactgactttcatccatgctcatttatatgcca
caaaaccattcacaacagcatggttttataagttatttcaaaattctaat
acaatccaatatcatgttgtttaggtttttttttccatttttattaggta
tttagctcatttacatttccaatgctataccaaaagtccccccataccca
cccacccccactcccctacccaaccactccccctttttggccctggcgtt
cccctatactggggcatataatatttgcgtgtccaatgggcctctctttc
cagtaatggccgactaggccatcttttgatacatatgcagctagagtcaa
gagctccggggtactggatagtacataatgttgttccacctatagggttg
cagatccctttagctccttgggtactttctctagctcctccattgggagc
cctgtgatccatccattagctgactgtgagcatccacttctgtgtttcct
aggcccggcatagtctaacaagagacagctacatctgggtctttcgataa
aataattgcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_32901791_32902436
seq2: B6Ng01-154K10.b_539_1185

seq1  GATGACTCCCTCACCTGCTCTGGCAGTCAGAGCCCTCCTGGGTGGACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTCCCTCACCTGCTCTGGCAGTCAGAGCCCTCCTGGGTGGACACC  50

seq1  TCTTCTATAGCAGGGAAGGTAGCTGGATGTTTGGTGCCCAAAATGGGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATAGCAGGGAAGGTAGCTGGATGTTTGGTGCCCAAAATGGGGTC  100

seq1  TCTCCCACAAGCTGTGTTTCTTCTGCCTGTCCCAGAAGCTGTGTCCCGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCACAAGCTGTGTTTCTTCTGCCTGTCCCAGAAGCTGTGTCCCGTC  150

seq1  TGTAGTCCGCTCGCACAGCCTCCGAAGAACTGAGCTGCACAGACTGGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCCGCTCGCACAGCCTCCGAAGAACTGAGCTGCACAGACTGGTCT  200

seq1  CTGAGGGACCTGGAACCCATGATGGCTCACTCATTTGCTCCTGCAGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGACCTGGAACCCATGATGGCTCACTCATTTGCTCCTGCAGTCAG  250

seq1  AGTCCTTCCGGGAGGACACCTCTCCTCTGGCAGGGAAAGTGCCTGGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTCCGGGAGGACACCTCTCCTCTGGCAGGGAAAGTGCCTGGATGT  300

seq1  CTGGAGCTGGAAGAGGGGTGTGTCCAAGAAGCTGTGTGACTACTGCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCTGGAAGAGGGGTGTGTCCAAGAAGCTGTGTGACTACTGCCTGT  350

seq1  CCCAGAATCTGACTTGCTGCTGTACTCAGCACTCTCACCTCACAGAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAATCTGACTTGCTGCTGTACTCAGCACTCTCACCTCACAGAATAT  400

seq1  TCTCTGAGGGACCCGGGACCCAAGATGGCTCCCTCACCTGCTGTCTTAGT  450
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAAGGACCCGGGACCCAAGATGGCTCCCTCACCTGCTGTCTTAGT  450

seq1  CAGAGCCCTCCTGGGCAGTCA-CCTCTCCTCTAATCCTGAGCCTTCTATT  499
      ||||||||||||||||||||| ||||||||||||||||||| |||||| |
seq2  CAGAGCCCTCCTGGGCAGTCACCCTCTCCTCTAATCCTGAG-CTTCTA-T  498

seq1  GATTATGATACCAATGATCAAGACAG-CTCAAAAACCCTATCAGCCAGCT  548
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  GATTATGATACCAATGATCAAGACAGCCTCAAAAACCCTTTCAGCCAGCT  548

seq1  GAGTTAACCTAGAGTGTAGTGTCAACTCTTACTGGTGAGTAAGTATATTC  598
      ||||||||||| |||||||||||| |||||||| |||||||| | || ||
seq2  GAGTTAACCTAAAGTGTAGTGTCACCTCTTACT-GTGAGTAAAT-TAATC  596

seq1  TATCAATTCTCAAAGCTACTCCCCATAT---GACTCATG-ACCAGACTTT  644
      |||||| ||||||||||||  |||||||   |||||||| || | |||||
seq2  TATCAA-TCTCAAAGCTACCTCCCATATATGGACTCATGAACAAAACTTT  645

seq1  GT  646
      ||
seq2  GT  647

seq1: chrX_102073741_102074295
seq2: B6Ng01-154K10.g_592_1026 (reverse)

seq1  AGCAA-GATTTTATCGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACT  49
      |||||  |||||||||||| |||||||||||||||||||||||| |||||
seq2  AGCAATTATTTTATCGAAA-GACCCAGATGTAGCTGTCTCTTGTTAGACT  49

seq1  ATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGG  99
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  ATGCC-GGGCCTAGGAAACACAGAAGTGGATGCTCACAGTCAGCTAATGG  98

seq1  ATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGC  149
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGC  148

seq1  TAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTATCCAGT  199
      ||||||||||||||||||||||||||||||||||||||| |||||     
seq2  TAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGTACTAT-----  193

seq1  ACCCCGGAGCTGTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTATA  249
                                                        
seq2  --------------------------------------------------  193

seq1  GAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACA  299
                                                        
seq2  --------------------------------------------------  193

seq1  ACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATA  349
                    ||||||||||||||||||||||||||||||||||| 
seq2  --------------CCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATG  229

seq1  TATCAAAAGATGGCCTAGTCGGCCATCACTGGGAAGAGAGGCCCATTGGA  399
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  TATCAAAAGATGGCCTAGTCGGCCATTACTGGAAAGAGAGGCCCATTGGA  279

seq1  CTTGCAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGG  449
      |  |||||  ||||||||||||||| |||||||| |||||||||||||||
seq2  CACGCAAATATTATATGCCCCAGTATAGGGGAACGCCAGGGCCAAAAAGG  329

seq1  GGGAGTGGGTGGGCAGGGGAGTGGGGGTGGGTGGATAT-GGGGGACTTTT  498
      |||||||| |||| |||||||||||||||||||| ||| |||||||||||
seq2  GGGAGTGGTTGGGTAGGGGAGTGGGGGTGGGTGGGTATGGGGGGACTTTT  379

seq1  GGTATAGCATTGGAAATGTAAATGAGTTAATTACCTAATAAAAGATGGAA  548
      |||||||||||||||||||||||||| ||| |||||||||||| ||||||
seq2  GGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAA-ATGGAA  428

seq1  AAAAAAA  555
      |||||||
seq2  AAAAAAA  435