BAC Information

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BAC

Clone NameB6Ng01-156A10
Chromosome4 (Build37)X (Build37)
Map Location 134,262,327 - 134,262,491125,429,679 - 125,430,820
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneArid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1
Downstream geneLdlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156A10.bB6Ng01-156A10.g
ACCDH950643DH950644
length6361,127
definitionDH950643|Mus musculus domesticus DNA, BAC clone: B6Ng01-156A10, 5' end.DH950644|Mus musculus domesticus DNA, BAC clone: B6Ng01-156A10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(134,262,327 - 134,262,491)(125,429,679 - 125,430,820)
sequence
gaattcttctacatgcttatgtccagttagatgaacatcatttgttgaaa
atacttttatttttttctcaccccattggtgggaatggggtgttgaagta
tcccactattgtatgagttcaatgtgtgatttaagccttaataatgtttc
ttttatgaatgtgactaccattgcatttgggggaaaaatagaactcagat
gtcttctttgtagattttccctatgatgagtatgaagtgtccttccccat
ctcttttgattaattttggttgaaagtcacttttattagatattagaaag
gctacttctgcttgcttcttgcctctatttgcttggacaacccttttcca
gccctttacaccaaggttgtgtttatctctgttgctgatgtgtgtttcat
gtgtgtagcagaatgatggatcctgttttcctatctcttctgttagcctg
tatttttttgaaagatttattttgtttatcttatatgaatacactgttta
tctctctttatacacaccagaagagggcatcggatcccattacagatggt
tatgagccaccatttggttgctgggatttgaacttatgacctctggaaga
gcagtcagtgctcttaactactgagccatctctcca
gaattcactctgtagaccagggtggccttgaacacagaaatccacctggc
tctgcctcccaagtgctgggattaaaggcatgcaccaccactgcctagct
agggtttcattttttaattgtgagttctggggatcaaactcaggtccccc
atgcatgtgaggaatcaactgagtcatctctccagccccactttactctt
tgaaaatctggtttcatgatatgtcctgaagggattaataaagtgttagc
aaatacattgtaaagctgtctggaaaggcatagttattttaaaatatgct
ttaggcattgctacctgtttcatgaccagcactggttggaagacccattc
tcactgtcctattcctcctccagtttctgaagaggtaggctaaataagtg
ctgcacttgcagattccaatcaaaatcactggtgccttttgatggggtga
agtctttggcccttctgagggtcttagtataagagatcataatgaggact
gtaagaaactccacaatggggccacctcacctgggagggctttgccagag
catctgcaggagacatcttggttcccacatcctgccaagactagtcagca
caggtgagagtgtagactatagaagctaacagcttctgggacaggcagga
gccacagagcttctgaggcagatcccatttcgggctccagatatccgggt
accttccctgagagaggagaggtgtcctcccgacctgggaaggtattgca
ggagcatctgctgtaactccccccaccccaccaagcctgaattctggctg
atcaggcttgactgttatctctaggagagtaccaggagtggagtctgcca
ccctattgttctgccactcccactgctgctatctgcctcctagctgttcc
aaagtacttacatggtcacctacagctggacaccgaagatgatttggcgg
gatgggccacttcccctcttataaccccgtgttccgaatattaatagagc
tttgatcagaattttgtcttagctcattctttttctcgtcattaagtcct
ctcaatcagaacgagtctgctgcttcagcaacttgttctgcaggcactgg
atggcccaagcaaatcttggggagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134262327_134262491
seq2: B6Ng01-156A10.b_510_681 (reverse)

seq1  TGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGCTCC  50
      |||||||||||||||| ||||||||||||||||||||||||||||| || 
seq2  TGGAGAGATGGCTCAGTAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCA  50

seq1  TGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGG  100
      | ||||||| |||||||||||| ||||||||||| |||||||||||||||
seq2  TAAGTTCAAATCCCAGCAACCAAATGGTGGCTCATAACCATCTGTAATGG  100

seq1  GATCCAAAGCCCTCTTCTGGTGTGTCTTTACACAGCT--ACAGTGTATTC  148
      ||||| | ||||||||||||||||| |  | | || |  |||||||||||
seq2  GATCCGATGCCCTCTTCTGGTGTGTATAAAGAGAGATAAACAGTGTATTC  150

seq1  AT-----ATAAATAAAATAAAT  165
      ||     ||||| |||||||||
seq2  ATATAAGATAAACAAAATAAAT  172

seq1: chrX_125429679_125430820
seq2: B6Ng01-156A10.g_69_1195

seq1  GAATTCACTCTGTAGACCAGGGTGGCCTTGAACACAGAAATCCACCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGGTGGCCTTGAACACAGAAATCCACCTGGC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACTGCCTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCACTGCCTAGCT  100

seq1  AGGGTTTCATTTTTTAATTGTGAGTTCTGGGGATCAAACTCAGGTCCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCATTTTTTAATTGTGAGTTCTGGGGATCAAACTCAGGTCCCCC  150

seq1  ATGCATGTGAGGAATCAACTGAGTCATCTCTCCAGCCCCACTTTACTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTGAGGAATCAACTGAGTCATCTCTCCAGCCCCACTTTACTCTT  200

seq1  TGAAAATCTGGTTTCATGATATGTCCTGAAGGGATTAATAAAGTGTTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCTGGTTTCATGATATGTCCTGAAGGGATTAATAAAGTGTTAGC  250

seq1  AAATACATTGTAAAGCTGTCTGGAAAGGCATAGTTATTTTAAAATATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATTGTAAAGCTGTCTGGAAAGGCATAGTTATTTTAAAATATGCT  300

seq1  TTAGGCATTGCTACCTGTTTCATGACCAGCACTGGTTGGAAGACCCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCATTGCTACCTGTTTCATGACCAGCACTGGTTGGAAGACCCATTC  350

seq1  TCACTGTCCTATTCCTCCTCCAGTTTCTGAAGAGGTAGGCTAAATAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTCCTATTCCTCCTCCAGTTTCTGAAGAGGTAGGCTAAATAAGTG  400

seq1  CTGCACTTGCAGATTCCAATCAAAATCACTGGTGCCTTTTGATGGGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTTGCAGATTCCAATCAAAATCACTGGTGCCTTTTGATGGGGTGA  450

seq1  AGTCTTTGGCCCTTCTGAGGGTCTTAGTATAAGAGATCATAATGAGGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTGGCCCTTCTGAGGGTCTTAGTATAAGAGATCATAATGAGGACT  500

seq1  GTAAGAAACTCCACAATGGGGCCACCTCACCTGGGAGGGCTTTGCCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAACTCCACAATGGGGCCACCTCACCTGGGAGGGCTTTGCCAGAG  550

seq1  CATCTGCAGGAGACATCTTGGTTCCCACATCCTGCCAAGACTAGTCAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCAGGAGACATCTTGGTTCCCACATCCTGCCAAGACTAGTCAGCA  600

seq1  CAGGTGAGAGTGTAGACTATAGAAGCTAACAGCTTCTGGGACAGGCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAGAGTGTAGACTATAGAAGCTAACAGCTTCTGGGACAGGCAGGA  650

seq1  GCCACAGAGCTTCTGAGGCAGATCCCATTTCGGGCTCCAGATATCCGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGAGCTTCTGAGGCAGATCCCATTTCGGGCTCCAGATATCCGGGT  700

seq1  ACCTTCCCTGAGAGAGGAGAGGTGTCCTCCCGACCTGGGAAGGTATTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCCTGAGAGAGGAGAGGTGTCCTCCCGACCTGGGAAGGTATTGCA  750

seq1  GGAGCATCTGCTGTAACTCCCCCCACCCCACCAAGCCTGAATTCTGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATCTGCTGTAACTCCCCCCACCCCACCAAGCCTGAATTCTGGCTG  800

seq1  ATCAGGCTTGACTGTTATCTCTAGGAGAGTACCAGGAGTGGAGTCTGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCTTGACTGTTATCTCTAGGAGAGTACCAGGAGTGGAGTCTGCCA  850

seq1  CCCTATTGTTCTGCCACTCCCACTGCTGCTATCTGCCTCCTAGCTGTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTGTTCTGCCACTCCCACTGCTGCTATCTGCCTCCTAGCTGTTCC  900

seq1  AAAGTACTTACATGGTCACCTACAGCTGGACACCGAAGATGATTTGGCGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTTACATGGTCACCTACAGCTGGACACCGAAGATGATTTGGCGG  950

seq1  GAATGGGCCACTTCCCCTTCTTTATAACCCCGTGTTCCGAATATTAAAAT  1000
      | ||||||||||||||||   ||||||||||||||||||||||||  |||
seq2  G-ATGGGCCACTTCCCCT--CTTATAACCCCGTGTTCCGAATATT--AAT  995

seq1  AGAGCTTTGATCAGAATCTTGTCCTAGCTCCATTCTTTCTCTCGTCCATC  1050
      ||||||||||||||||| ||||| ||||| |||||||| |||||| ||| 
seq2  AGAGCTTTGATCAGAATTTTGTCTTAGCT-CATTCTTTTTCTCGT-CATT  1043

seq1  TAGTTCCCTCTCATTCAGACCGAGTCTGCTGCTTCAGCCATACCTTGTTC  1100
       |||  ||||||| ||||| ||||||||||||||||||   | |||||||
seq2  AAGT--CCTCTCAATCAGAACGAGTCTGCTGCTTCAGC---AACTTGTTC  1088

seq1  CTTGCAAGCCACTGGATGGCCCACAGC-AATCTGTGGGAGCCA  1142
        ||| || |||||||||||||| ||| |||||  ||||||||
seq2  --TGC-AGGCACTGGATGGCCCA-AGCAAATCTTGGGGAGCCA  1127